Wall clock time and date at job start Mon Mar 30 2020 04:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 114.00015 * 2 1 4 4 C 1.53003 * 109.47364 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.46948 * 64.99661 * 4 3 2 6 6 C 1.46953 * 110.99985 * 66.05385 * 5 4 3 7 7 C 1.53047 * 109.38227 * 183.19858 * 6 5 4 8 8 H 1.08997 * 109.49056 * 61.55364 * 7 6 5 9 9 C 1.50701 * 109.48871 * 181.59290 * 7 6 5 10 10 H 1.08004 * 119.99645 * 84.81692 * 9 7 6 11 11 C 1.37874 * 120.00244 * 264.81429 * 9 7 6 12 12 N 1.31514 * 119.99931 * 5.24202 * 11 9 7 13 13 Si 1.86797 * 120.00176 * 185.23654 * 11 9 7 14 14 H 1.48500 * 109.47019 * 60.00214 * 13 11 9 15 15 H 1.48501 * 109.47636 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47221 * 300.00230 * 13 11 9 17 17 N 1.46951 * 109.36611 * 301.58193 * 7 6 5 18 18 C 1.46904 * 111.00334 * 183.18788 * 17 7 6 19 19 C 1.46961 * 110.88031 * 59.32059 * 17 7 6 20 20 C 1.47001 * 111.02870 * 189.83613 * 5 4 3 21 21 H 1.08998 * 109.50402 * 296.80821 * 20 5 4 22 22 C 1.53006 * 109.47954 * 56.85438 * 20 5 4 23 23 H 1.08999 * 109.46404 * 60.00450 * 1 2 3 24 24 H 1.08997 * 109.46707 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46961 * 300.00272 * 1 2 3 26 26 H 1.09007 * 109.47434 * 59.99643 * 3 2 1 27 27 H 1.09002 * 109.47288 * 299.99671 * 3 2 1 28 28 H 1.09009 * 109.47023 * 304.99784 * 4 3 2 29 29 H 1.08994 * 109.47251 * 184.99995 * 4 3 2 30 30 H 1.09001 * 109.49258 * 63.21107 * 6 5 4 31 31 H 1.09001 * 109.48327 * 303.17357 * 6 5 4 32 32 H 0.97009 * 120.00002 * 179.97438 * 12 11 9 33 33 H 1.09001 * 109.46600 * 65.43784 * 18 17 7 34 34 H 1.08998 * 109.46865 * 185.43410 * 18 17 7 35 35 H 1.08990 * 109.47079 * 305.43622 * 18 17 7 36 36 H 1.09001 * 109.48519 * 60.64924 * 19 17 7 37 37 H 1.09001 * 109.48843 * 180.69188 * 19 17 7 38 38 H 1.09002 * 109.46889 * 179.89783 * 22 20 5 39 39 H 1.08999 * 109.47414 * 299.89304 * 22 20 5 40 40 H 1.08997 * 109.47250 * 59.90253 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9779 0.5622 -1.2543 6 6 3.6969 1.4350 -2.4027 7 6 4.0983 0.7194 -3.6946 8 1 3.5079 -0.1902 -3.8050 9 6 3.8475 1.6273 -4.8710 10 1 4.5924 2.3536 -5.1609 11 6 2.6673 1.5308 -5.5772 12 7 1.7181 0.7199 -5.1636 13 14 2.4164 2.5518 -7.1211 14 1 3.4606 2.2056 -8.1186 15 1 1.0743 2.2679 -7.6899 16 1 2.5147 3.9943 -6.7821 17 7 5.5254 0.3736 -3.6371 18 6 5.9674 -0.2486 -4.8922 19 6 5.8069 -0.4993 -2.4888 20 6 5.4055 0.2163 -1.1969 21 1 5.9961 1.1257 -1.0863 22 6 5.6594 -0.7057 -0.0025 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6887 1.8464 -0.8900 28 1 3.8508 0.5685 0.8428 29 1 3.9784 2.1765 0.0902 30 1 4.2678 2.3585 -2.3059 31 1 2.6323 1.6670 -2.4311 32 1 0.8875 0.6522 -5.6603 33 1 5.8996 0.4784 -5.7016 34 1 7.0001 -0.5816 -4.7886 35 1 5.3307 -1.1039 -5.1177 36 1 5.2359 -1.4228 -2.5856 37 1 6.8716 -0.7313 -2.4608 38 1 6.7177 -0.9636 0.0388 39 1 5.3736 -0.1958 0.9174 40 1 5.0681 -1.6147 -0.1130 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220552039.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:12 Heat of formation + Delta-G solvation = -52.057832 kcal Electronic energy + Delta-G solvation = -19008.049634 eV Core-core repulsion = 16243.259500 eV Total energy + Delta-G solvation = -2764.790134 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.44784 -38.61899 -36.54225 -34.85879 -33.08189 -31.18724 -28.92290 -28.10460 -26.83055 -25.97177 -24.71928 -22.75313 -21.90634 -20.36950 -18.56898 -17.38778 -17.28555 -16.79985 -16.27111 -15.91190 -15.80691 -15.65858 -15.18909 -14.68794 -14.67548 -14.08230 -13.75849 -13.45157 -13.09818 -12.91474 -12.80292 -12.67568 -12.62434 -12.52354 -12.40257 -12.14883 -11.98209 -11.66484 -11.64952 -11.24715 -10.95565 -10.55820 -10.46218 -9.08331 -8.91656 -8.14372 -6.27554 1.39992 1.41664 1.49763 2.39679 2.92455 3.04241 3.18668 3.46598 4.01083 4.11082 4.25365 4.34761 4.37054 4.46868 4.52614 4.56414 4.62553 4.65462 4.68934 4.73123 4.77402 4.85757 4.87769 4.91283 4.96281 5.04321 5.14643 5.21178 5.33067 5.49540 5.57079 5.71069 6.06713 6.22609 6.31171 6.39862 6.50930 6.77837 6.95107 7.42839 8.92301 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.018397 B = 0.009428 C = 0.006820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.623742 B = 2969.224113 C = 4104.354442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.400 6.400 3 C 0.066 3.934 4 C 0.052 3.948 5 N -0.545 5.545 6 C 0.095 3.905 7 C 0.219 3.781 8 H -0.013 1.013 9 C -0.520 4.520 10 H 0.054 0.946 11 C 0.017 3.983 12 N -0.919 5.919 13 Si 0.957 3.043 14 H -0.269 1.269 15 H -0.285 1.285 16 H -0.269 1.269 17 N -0.555 5.555 18 C 0.053 3.947 19 C 0.062 3.938 20 C 0.084 3.916 21 H 0.039 0.961 22 C -0.132 4.132 23 H 0.024 0.976 24 H 0.091 0.909 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.026 0.974 28 H 0.101 0.899 29 H 0.052 0.948 30 H 0.010 0.990 31 H 0.045 0.955 32 H 0.262 0.738 33 H 0.057 0.943 34 H 0.077 0.923 35 H -0.006 1.006 36 H 0.011 0.989 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.502 -0.409 10.762 11.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.319 6.319 3 C -0.011 4.011 4 C -0.075 4.075 5 N -0.271 5.271 6 C -0.033 4.033 7 C 0.111 3.889 8 H 0.005 0.995 9 C -0.559 4.559 10 H 0.072 0.928 11 C -0.183 4.183 12 N -0.558 5.558 13 Si 0.782 3.218 14 H -0.194 1.194 15 H -0.210 1.210 16 H -0.194 1.194 17 N -0.280 5.280 18 C -0.095 4.095 19 C -0.067 4.067 20 C -0.024 4.024 21 H 0.057 0.943 22 C -0.190 4.190 23 H 0.043 0.957 24 H 0.110 0.890 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.045 0.955 28 H 0.119 0.881 29 H 0.070 0.930 30 H 0.028 0.972 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.013 0.987 36 H 0.029 0.971 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.432 -0.643 10.724 11.279 hybrid contribution -0.896 0.672 -1.223 1.659 sum 2.536 0.029 9.502 9.834 Atomic orbital electron populations 1.22812 0.80633 1.03249 0.99960 1.87924 1.20380 1.28251 1.95335 1.22623 0.93862 0.84771 0.99806 1.22269 0.93563 0.98421 0.93287 1.62224 1.17691 1.44385 1.02772 1.21989 0.98162 0.92918 0.90231 1.19127 0.83185 0.94101 0.92450 0.99487 1.21185 1.02117 1.19178 1.13439 0.92803 1.25786 0.95632 0.96478 1.00403 1.70132 1.06233 1.38921 1.40475 0.85630 0.77185 0.79264 0.79702 1.19436 1.21004 1.19394 1.62322 1.20626 1.42055 1.03018 1.21994 0.98444 0.96489 0.92595 1.22219 1.00197 0.93549 0.90690 1.21683 0.87469 0.97691 0.95549 0.94336 1.21804 1.02294 0.98921 0.95991 0.95679 0.89013 0.92086 0.90523 0.95525 0.88140 0.93030 0.97159 0.93665 0.92936 0.92457 0.90474 0.98694 0.97103 0.89041 0.90130 0.91132 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 11.01 113.37 1.25 2.11 16 2 O -0.40 -14.52 10.65 -148.98 -1.59 -16.11 16 3 C 0.07 2.18 6.00 71.98 0.43 2.61 16 4 C 0.05 1.69 5.11 86.30 0.44 2.13 16 5 N -0.55 -22.12 4.48 -870.37 -3.90 -26.02 16 6 C 0.10 4.64 4.68 86.31 0.40 5.04 16 7 C 0.22 11.68 2.02 44.18 0.09 11.77 16 8 H -0.01 -0.80 7.38 -2.39 -0.02 -0.82 16 9 C -0.52 -29.40 7.05 25.60 0.18 -29.22 16 10 H 0.05 3.04 7.82 -2.91 -0.02 3.02 16 11 C 0.02 0.96 5.45 84.65 0.46 1.42 16 12 N -0.92 -55.11 12.84 21.45 0.28 -54.83 16 13 Si 0.96 44.23 29.54 68.60 2.03 46.25 16 14 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 15 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 17 N -0.56 -25.44 4.78 -900.98 -4.30 -29.74 16 18 C 0.05 2.26 9.19 127.69 1.17 3.44 16 19 C 0.06 2.38 4.89 86.31 0.42 2.80 16 20 C 0.08 2.96 2.56 44.92 0.12 3.08 16 21 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 22 C -0.13 -3.49 8.89 71.98 0.64 -2.85 16 23 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 27 H 0.03 1.02 6.28 -2.39 -0.01 1.01 16 28 H 0.10 2.82 5.74 -2.38 -0.01 2.80 16 29 H 0.05 1.55 8.12 -2.39 -0.02 1.53 16 30 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.04 2.42 6.24 -2.39 -0.01 2.41 16 32 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 33 H 0.06 2.57 7.22 -2.39 -0.02 2.55 16 34 H 0.08 2.63 8.04 -2.39 -0.02 2.61 16 35 H -0.01 -0.26 8.13 -2.39 -0.02 -0.28 16 36 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.09 2.90 8.08 -2.39 -0.02 2.88 16 38 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.07 1.63 6.16 -2.39 -0.01 1.61 16 40 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -66.82 311.25 -0.89 -67.72 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 0.98 Total: 10.41 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 5.61 Total: 2.32 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -7.92 Total: -110.59 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -1.59 Total: -16.11 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -66.82 -0.89 -67.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220552039.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.660 kcal (2) G-P(sol) polarization free energy of solvation -66.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds