Wall clock time and date at job start Mon Mar 30 2020 04:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99881 * 2 1 4 4 C 1.52999 * 109.47028 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.46737 * 64.32862 * 4 3 2 6 6 C 1.46948 * 111.00066 * 72.08246 * 5 4 3 7 7 C 1.53057 * 109.36508 * 183.18814 * 6 5 4 8 8 H 1.09000 * 109.48890 * 61.56348 * 7 6 5 9 9 C 1.52997 * 109.49114 * 181.60738 * 7 6 5 10 10 N 1.46952 * 109.36151 * 301.59621 * 7 6 5 11 11 C 1.46896 * 110.99842 * 183.18831 * 10 7 6 12 12 C 1.46963 * 110.88219 * 59.32060 * 10 7 6 13 13 H 1.09005 * 109.48535 * 60.64487 * 12 10 7 14 14 C 1.50697 * 109.48920 * 180.71177 * 12 10 7 15 15 H 1.07997 * 119.99840 * 359.88740 * 14 12 10 16 16 C 1.37875 * 120.00018 * 179.89030 * 14 12 10 17 17 N 1.31514 * 119.99837 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 120.00148 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.46900 * 90.00069 * 18 16 14 20 20 H 1.48504 * 109.47203 * 210.00213 * 18 16 14 21 21 H 1.48495 * 109.47329 * 330.00349 * 18 16 14 22 22 C 1.46952 * 110.99695 * 195.87914 * 5 4 3 23 23 H 1.08994 * 109.46793 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46562 * 299.99636 * 1 2 3 25 25 H 1.08996 * 109.47042 * 59.99292 * 1 2 3 26 26 H 1.09002 * 109.46789 * 60.00410 * 3 2 1 27 27 H 1.08997 * 109.47383 * 300.00625 * 3 2 1 28 28 H 1.08994 * 109.47243 * 304.32982 * 4 3 2 29 29 H 1.09005 * 109.47236 * 184.32145 * 4 3 2 30 30 H 1.09007 * 109.48815 * 303.15367 * 6 5 4 31 31 H 1.09000 * 109.49540 * 63.19682 * 6 5 4 32 32 H 1.09001 * 109.47263 * 59.99635 * 9 7 6 33 33 H 1.08996 * 109.47297 * 180.02562 * 9 7 6 34 34 H 1.09006 * 109.47023 * 300.00273 * 9 7 6 35 35 H 1.09002 * 109.47663 * 56.04341 * 11 10 7 36 36 H 1.09005 * 109.47472 * 176.05153 * 11 10 7 37 37 H 1.09005 * 109.46956 * 296.04428 * 11 10 7 38 38 H 0.96997 * 120.00065 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.49049 * 296.77815 * 22 5 4 40 40 H 1.09007 * 109.49311 * 56.84440 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5476 -1.2474 6 6 3.8265 1.4626 -2.3874 7 6 4.2206 0.7368 -3.6761 8 1 3.5570 -0.1138 -3.8318 9 6 4.1036 1.6989 -4.8600 10 7 5.6071 0.2630 -3.5639 11 6 6.0483 -0.3740 -4.8118 12 6 5.7573 -0.6520 -2.4237 13 1 5.1112 -1.5185 -2.5653 14 6 7.1916 -1.1042 -2.3276 15 1 7.9188 -0.7492 -3.0428 16 6 7.5755 -1.9711 -1.3266 17 7 6.6899 -2.4038 -0.4560 18 14 9.3533 -2.5322 -1.2078 19 1 10.1122 -1.5924 -0.3440 20 1 9.4041 -3.8952 -0.6205 21 1 9.9569 -2.5549 -2.5643 22 6 5.3632 0.0738 -1.1352 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.6886 1.8463 0.8901 27 1 1.6886 1.8464 -0.8899 28 1 3.8516 0.5784 0.8495 29 1 3.9786 2.1776 0.0781 30 1 2.7890 1.7897 -2.4570 31 1 4.4723 2.3293 -2.2458 32 1 4.7678 2.5490 -4.7043 33 1 4.3839 1.1816 -5.7775 34 1 3.0754 2.0514 -4.9415 35 1 5.9238 0.3239 -5.6398 36 1 7.0986 -0.6525 -4.7261 37 1 5.4497 -1.2662 -4.9956 38 1 6.9598 -3.0140 0.2480 39 1 6.0267 0.9244 -0.9795 40 1 5.4462 -0.6117 -0.2918 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220553570.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:41 Heat of formation + Delta-G solvation = -26.605189 kcal Electronic energy + Delta-G solvation = -18874.813185 eV Core-core repulsion = 16111.126761 eV Total energy + Delta-G solvation = -2763.686424 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.75380 -37.41634 -34.80587 -33.30055 -30.90746 -29.84921 -27.07394 -26.22722 -25.68235 -24.92209 -22.68269 -20.86890 -20.50174 -18.61570 -16.37828 -16.11937 -15.87489 -15.05318 -14.87222 -14.64722 -14.18801 -13.95254 -13.43124 -13.23780 -12.94729 -12.38085 -12.24691 -11.81908 -11.64281 -11.47887 -11.33658 -11.15998 -10.96181 -10.83047 -10.63089 -10.46974 -10.35313 -10.01100 -9.95926 -9.46467 -9.31280 -8.85310 -8.42521 -7.40464 -7.06857 -5.98524 -4.03862 3.32594 3.39138 3.42310 4.10966 4.41910 4.68977 5.02718 5.29588 5.33792 5.40288 5.51114 5.53912 5.57799 5.67949 5.78659 5.85759 5.89852 5.95270 6.04485 6.12880 6.23455 6.31969 6.37481 6.45711 6.50096 6.75065 6.82878 6.90149 7.03725 7.43941 7.50267 7.64159 7.81547 7.99170 8.05821 8.21702 8.38355 8.68181 9.04120 9.61051 11.07778 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.020407 B = 0.008165 C = 0.006321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.779503 B = 3428.486900 C = 4428.461848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.367 6.367 3 C 0.070 3.930 4 C 0.057 3.943 5 N -0.534 5.534 6 C 0.067 3.933 7 C 0.081 3.919 8 H 0.036 0.964 9 C -0.142 4.142 10 N -0.538 5.538 11 C 0.037 3.963 12 C 0.223 3.777 13 H 0.009 0.991 14 C -0.507 4.507 15 H 0.064 0.936 16 C 0.060 3.940 17 N -0.888 5.888 18 Si 0.897 3.103 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.070 3.930 23 H 0.081 0.919 24 H 0.032 0.968 25 H 0.034 0.966 26 H 0.042 0.958 27 H 0.044 0.956 28 H 0.081 0.919 29 H 0.040 0.960 30 H 0.059 0.941 31 H 0.029 0.971 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.010 0.990 38 H 0.261 0.739 39 H 0.013 0.987 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.913 7.546 -1.585 11.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C -0.008 4.008 4 C -0.072 4.072 5 N -0.259 5.259 6 C -0.061 4.061 7 C -0.028 4.028 8 H 0.054 0.946 9 C -0.200 4.200 10 N -0.264 5.264 11 C -0.111 4.111 12 C 0.117 3.883 13 H 0.026 0.974 14 C -0.546 4.546 15 H 0.082 0.918 16 C -0.142 4.142 17 N -0.526 5.526 18 Si 0.725 3.275 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.057 4.057 23 H 0.100 0.900 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.029 0.971 38 H 0.071 0.929 39 H 0.032 0.968 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.808 7.241 -1.408 11.489 hybrid contribution 0.648 -0.063 0.192 0.679 sum -8.160 7.179 -1.216 10.936 Atomic orbital electron populations 1.22681 0.82559 1.02296 0.99039 1.88101 1.18084 1.27295 1.95061 1.22580 0.94516 0.84864 0.98798 1.22039 0.92535 0.97735 0.94861 1.62240 1.25944 1.36277 1.01409 1.22101 0.98657 0.93962 0.91406 1.21531 0.91191 0.96424 0.93673 0.94576 1.21858 1.00503 0.99694 0.97959 1.62265 1.18170 1.41209 1.04724 1.22222 1.01571 0.95857 0.91477 1.19246 0.96061 0.88432 0.84600 0.97363 1.21134 0.93817 1.26359 1.13296 0.91756 1.24969 0.97501 0.96010 0.95685 1.69895 1.33269 1.33080 1.16376 0.86520 0.84948 0.77834 0.78224 1.20731 1.21307 1.19947 1.22488 0.82629 0.97646 1.02940 0.90011 0.94895 0.94690 0.93979 0.93830 0.90103 0.94190 0.92307 0.95260 0.92353 0.92607 0.93260 0.93520 0.90813 0.97100 0.92863 0.96821 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.37 -6.38 10.64 -35.23 -0.37 -6.76 16 3 C 0.07 1.06 6.08 37.16 0.23 1.29 16 4 C 0.06 1.02 5.36 -3.82 -0.02 1.00 16 5 N -0.53 -11.39 4.60 -234.46 -1.08 -12.47 16 6 C 0.07 1.27 4.72 -3.77 -0.02 1.26 16 7 C 0.08 1.59 2.56 -67.66 -0.17 1.41 16 8 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 9 C -0.14 -2.19 8.87 37.16 0.33 -1.87 16 10 N -0.54 -12.12 4.59 -228.13 -1.05 -13.17 16 11 C 0.04 0.76 8.90 60.06 0.53 1.29 16 12 C 0.22 5.83 1.95 -68.80 -0.13 5.70 16 13 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 14 C -0.51 -14.01 7.94 -34.44 -0.27 -14.28 16 15 H 0.06 1.77 6.45 -52.49 -0.34 1.43 16 16 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 17 N -0.89 -25.46 11.34 55.43 0.63 -24.83 16 18 Si 0.90 21.37 29.54 -169.99 -5.02 16.34 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 22 C 0.07 1.74 4.62 -3.77 -0.02 1.72 16 23 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.04 0.62 6.56 -51.93 -0.34 0.28 16 28 H 0.08 1.53 7.91 -51.93 -0.41 1.12 16 29 H 0.04 0.65 8.05 -51.93 -0.42 0.24 16 30 H 0.06 0.98 6.53 -51.92 -0.34 0.64 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.05 0.82 6.28 -51.93 -0.33 0.50 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.81 6.03 -51.93 -0.31 0.50 16 36 H 0.07 1.59 6.29 -51.93 -0.33 1.26 16 37 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.11 2.98 6.00 -51.93 -0.31 2.67 16 LS Contribution 307.31 15.07 4.63 4.63 Total: -1.00 -29.95 307.31 -7.70 -37.66 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -6.91 Total: -2.01 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 1.47 Total: 0.60 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -1.50 Total: -50.47 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.37 Total: -6.76 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.95 -7.70 -37.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220553570.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.050 kcal (2) G-P(sol) polarization free energy of solvation -29.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds