Wall clock time and date at job start Mon Mar 30 2020 04:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42894 * 114.00487 * 2 1 4 4 C 1.53000 * 109.47205 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.47264 * 63.96019 * 4 3 2 6 6 C 1.46964 * 111.00026 * 76.23633 * 5 4 3 7 7 C 1.53046 * 109.36644 * 183.18989 * 6 5 4 8 8 H 1.09000 * 109.49326 * 181.63170 * 7 6 5 9 9 C 1.52999 * 109.50606 * 61.57904 * 7 6 5 10 10 N 1.46961 * 109.36567 * 301.60214 * 7 6 5 11 11 C 1.46895 * 110.99964 * 183.18671 * 10 7 6 12 12 C 1.46952 * 110.87807 * 59.31639 * 10 7 6 13 13 H 1.09004 * 109.48950 * 60.67837 * 12 10 7 14 14 C 1.50701 * 109.48706 * 180.71333 * 12 10 7 15 15 H 1.08003 * 120.00254 * 5.22869 * 14 12 10 16 16 C 1.37874 * 120.00170 * 185.23459 * 14 12 10 17 17 N 1.31514 * 119.99979 * 8.50628 * 16 14 12 18 18 Si 1.86800 * 120.00022 * 188.51363 * 16 14 12 19 19 H 1.48504 * 109.47288 * 269.99303 * 18 16 14 20 20 H 1.48500 * 109.47529 * 29.99579 * 18 16 14 21 21 H 1.48503 * 109.47150 * 149.99387 * 18 16 14 22 22 C 1.46948 * 111.00446 * 200.03712 * 5 4 3 23 23 H 1.08998 * 109.47115 * 59.99761 * 1 2 3 24 24 H 1.09003 * 109.47936 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47051 * 300.00278 * 1 2 3 26 26 H 1.09007 * 109.46982 * 60.00025 * 3 2 1 27 27 H 1.09002 * 109.47030 * 300.00178 * 3 2 1 28 28 H 1.08994 * 109.47290 * 303.95683 * 4 3 2 29 29 H 1.08999 * 109.47020 * 183.95729 * 4 3 2 30 30 H 1.09004 * 109.48803 * 63.22349 * 6 5 4 31 31 H 1.09000 * 109.48698 * 303.16091 * 6 5 4 32 32 H 1.09005 * 109.47346 * 300.09519 * 9 7 6 33 33 H 1.08998 * 109.47144 * 60.09690 * 9 7 6 34 34 H 1.08998 * 109.47281 * 180.10197 * 9 7 6 35 35 H 1.09003 * 109.47219 * 296.19808 * 11 10 7 36 36 H 1.09005 * 109.47439 * 56.20002 * 11 10 7 37 37 H 1.09004 * 109.47184 * 176.19565 * 11 10 7 38 38 H 0.96991 * 120.00198 * 5.48747 * 17 16 14 39 39 H 1.08998 * 109.48671 * 56.84549 * 22 5 4 40 40 H 1.08997 * 109.48960 * 296.78131 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1844 0.0006 5 7 3.9761 0.5394 -1.2434 6 6 3.9184 1.4783 -2.3726 7 6 4.3078 0.7483 -3.6601 8 1 4.2938 1.4496 -4.4944 9 6 3.3124 -0.3825 -3.9272 10 7 5.6584 0.1880 -3.5132 11 6 6.0990 -0.4570 -4.7573 12 6 5.7160 -0.7508 -2.3841 13 1 5.0232 -1.5738 -2.5598 14 6 7.1162 -1.2922 -2.2514 15 1 7.9053 -0.9091 -2.8815 16 6 7.3898 -2.2765 -1.3256 17 7 6.4063 -2.8611 -0.6771 18 14 9.1576 -2.7798 -0.9923 19 1 9.5396 -3.8833 -1.9097 20 1 10.0540 -1.6172 -1.2162 21 1 9.2847 -3.2390 0.4142 22 6 5.3267 -0.0208 -1.0966 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3635 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8463 -0.8900 28 1 3.8520 0.5837 0.8532 29 1 3.9786 2.1777 0.0716 30 1 4.6116 2.3011 -2.1972 31 1 2.9057 1.8699 -2.4685 32 1 3.3261 -1.0834 -3.0925 33 1 2.3108 0.0333 -4.0361 34 1 3.5913 -0.9032 -4.8433 35 1 5.4513 -1.3061 -4.9754 36 1 6.0465 0.2600 -5.5767 37 1 7.1262 -0.8034 -4.6430 38 1 5.4860 -2.6576 -0.9059 39 1 5.3407 -0.7222 -0.2624 40 1 6.0358 0.7849 -0.9067 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220553637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:45 Heat of formation + Delta-G solvation = -28.910369 kcal Electronic energy + Delta-G solvation = -19135.820099 eV Core-core repulsion = 16372.033715 eV Total energy + Delta-G solvation = -2763.786384 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.09676 -37.53892 -34.92773 -33.40407 -30.54282 -29.84949 -27.21707 -26.20735 -25.62518 -24.63239 -22.80133 -21.72380 -20.82413 -18.06094 -16.77561 -16.26369 -15.90419 -14.98794 -14.83606 -14.72356 -14.25462 -13.70351 -13.67662 -13.38090 -13.23910 -12.54656 -12.12143 -11.79979 -11.64084 -11.52771 -11.27651 -11.18600 -10.88418 -10.83246 -10.77309 -10.52927 -10.26933 -10.12637 -10.04885 -9.62630 -9.40320 -8.49621 -8.33967 -7.58358 -7.13342 -6.29280 -4.01364 3.46246 3.50215 3.66222 4.03054 4.50623 4.57494 4.97051 5.23137 5.32505 5.40733 5.43923 5.47364 5.54383 5.57607 5.72327 5.77481 5.81008 5.85979 6.04722 6.11635 6.16663 6.26932 6.29423 6.39185 6.56509 6.62792 6.66381 6.83386 6.92532 7.12932 7.39884 7.45225 7.70425 7.80218 7.96915 8.12651 8.45946 8.65595 8.93259 9.68384 11.06501 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022740 B = 0.008148 C = 0.006768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.027944 B = 3435.644757 C = 4136.308703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.368 6.368 3 C 0.071 3.929 4 C 0.054 3.946 5 N -0.530 5.530 6 C 0.067 3.933 7 C 0.081 3.919 8 H 0.067 0.933 9 C -0.172 4.172 10 N -0.532 5.532 11 C 0.041 3.959 12 C 0.209 3.791 13 H 0.008 0.992 14 C -0.590 4.590 15 H 0.057 0.943 16 C 0.023 3.977 17 N -0.909 5.909 18 Si 1.066 2.934 19 H -0.290 1.290 20 H -0.289 1.289 21 H -0.284 1.284 22 C 0.067 3.933 23 H 0.035 0.965 24 H 0.082 0.918 25 H 0.033 0.967 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.079 0.921 29 H 0.044 0.956 30 H 0.031 0.969 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.015 0.985 36 H 0.041 0.959 37 H 0.075 0.925 38 H 0.274 0.726 39 H 0.080 0.920 40 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.682 8.176 -1.281 11.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.286 6.286 3 C -0.006 4.006 4 C -0.074 4.074 5 N -0.255 5.255 6 C -0.061 4.061 7 C -0.029 4.029 8 H 0.085 0.915 9 C -0.231 4.231 10 N -0.256 5.256 11 C -0.108 4.108 12 C 0.102 3.898 13 H 0.025 0.975 14 C -0.629 4.629 15 H 0.075 0.925 16 C -0.182 4.182 17 N -0.545 5.545 18 Si 0.895 3.105 19 H -0.217 1.217 20 H -0.215 1.215 21 H -0.210 1.210 22 C -0.060 4.060 23 H 0.053 0.947 24 H 0.100 0.900 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.097 0.903 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.034 0.966 36 H 0.059 0.941 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -7.611 7.036 -0.309 10.369 hybrid contribution -1.262 1.296 -0.979 2.057 sum -8.873 8.332 -1.289 12.240 Atomic orbital electron populations 1.22681 0.82421 1.02353 0.99080 1.88082 1.18206 1.27253 1.95076 1.22543 0.94264 0.84922 0.98864 1.22079 0.92904 0.97870 0.94592 1.62206 1.27880 1.33115 1.02311 1.22089 0.98893 0.93600 0.91554 1.21665 0.89406 0.95915 0.95899 0.91535 1.22292 0.98438 1.00549 1.01822 1.62365 1.20654 1.37431 1.05124 1.22149 1.01583 0.96170 0.90875 1.19374 0.96794 0.88482 0.85120 0.97461 1.21927 0.94028 1.22694 1.24272 0.92492 1.25741 1.05703 0.93397 0.93399 1.70723 1.00871 1.42075 1.40801 0.83602 0.74546 0.75782 0.76589 1.21653 1.21496 1.21011 1.22483 0.84470 0.97489 1.01592 0.94663 0.89968 0.94847 0.93900 0.93814 0.90260 0.93849 0.95118 0.91984 0.90578 0.93769 0.93781 0.96611 0.94055 0.90624 0.91422 0.90186 0.95792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.37 -6.17 10.63 -35.23 -0.37 -6.54 16 3 C 0.07 1.04 6.13 37.16 0.23 1.27 16 4 C 0.05 0.92 5.39 -3.82 -0.02 0.90 16 5 N -0.53 -10.66 3.89 -234.48 -0.91 -11.57 16 6 C 0.07 1.22 4.86 -3.77 -0.02 1.20 16 7 C 0.08 1.53 2.97 -67.66 -0.20 1.33 16 8 H 0.07 1.14 8.13 -51.93 -0.42 0.72 16 9 C -0.17 -3.21 8.37 37.16 0.31 -2.90 16 10 N -0.53 -11.84 4.73 -228.15 -1.08 -12.92 16 11 C 0.04 0.84 8.83 60.06 0.53 1.37 16 12 C 0.21 5.31 1.19 -68.81 -0.08 5.22 16 13 H 0.01 0.22 5.62 -51.93 -0.29 -0.07 16 14 C -0.59 -16.37 7.73 -34.44 -0.27 -16.63 16 15 H 0.06 1.60 6.69 -52.48 -0.35 1.25 16 16 C 0.02 0.64 5.23 -17.82 -0.09 0.54 16 17 N -0.91 -27.04 12.87 55.43 0.71 -26.32 16 18 Si 1.07 25.11 29.91 -169.99 -5.08 20.03 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C 0.07 1.61 4.55 -3.77 -0.02 1.59 16 23 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.04 0.52 8.14 -51.92 -0.42 0.10 16 27 H 0.04 0.60 6.79 -51.93 -0.35 0.25 16 28 H 0.08 1.43 7.84 -51.93 -0.41 1.02 16 29 H 0.04 0.67 7.99 -51.93 -0.41 0.25 16 30 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.98 6.76 -51.93 -0.35 0.63 16 32 H 0.08 1.67 5.95 -51.93 -0.31 1.36 16 33 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.04 0.80 6.56 -51.93 -0.34 0.45 16 35 H 0.02 0.32 6.58 -51.93 -0.34 -0.02 16 36 H 0.04 0.73 8.13 -51.93 -0.42 0.30 16 37 H 0.08 1.66 6.38 -51.93 -0.33 1.32 16 38 H 0.27 8.29 6.27 -40.82 -0.26 8.04 16 39 H 0.08 2.12 6.37 -51.93 -0.33 1.78 16 40 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 302.63 15.07 4.56 4.56 Total: -1.00 -30.28 302.63 -7.37 -37.64 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.68 Total: -0.27 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 1.48 Total: -4.61 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: -1.28 Total: -50.81 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.37 Total: -6.54 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.08 Total: 20.03 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.28 -7.37 -37.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220553637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.735 kcal (2) G-P(sol) polarization free energy of solvation -30.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds