Wall clock time and date at job start Mon Mar 30 2020 04:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42894 * 114.00487 * 2 1 4 4 C 1.53000 * 109.47205 * 179.97438 * 3 2 1 5 5 N 1.46899 * 109.47264 * 63.96019 * 4 3 2 6 6 C 1.46964 * 111.00026 * 76.23633 * 5 4 3 7 7 C 1.53046 * 109.36644 * 183.18989 * 6 5 4 8 8 H 1.09000 * 109.49326 * 181.63170 * 7 6 5 9 9 C 1.52999 * 109.50606 * 61.57904 * 7 6 5 10 10 N 1.46961 * 109.36567 * 301.60214 * 7 6 5 11 11 C 1.46895 * 110.99964 * 183.18671 * 10 7 6 12 12 C 1.46952 * 110.87807 * 59.31639 * 10 7 6 13 13 H 1.09004 * 109.48950 * 60.67837 * 12 10 7 14 14 C 1.50701 * 109.48706 * 180.71333 * 12 10 7 15 15 H 1.08003 * 120.00254 * 5.22869 * 14 12 10 16 16 C 1.37874 * 120.00170 * 185.23459 * 14 12 10 17 17 N 1.31514 * 119.99979 * 8.50628 * 16 14 12 18 18 Si 1.86800 * 120.00022 * 188.51363 * 16 14 12 19 19 H 1.48504 * 109.47288 * 269.99303 * 18 16 14 20 20 H 1.48500 * 109.47529 * 29.99579 * 18 16 14 21 21 H 1.48503 * 109.47150 * 149.99387 * 18 16 14 22 22 C 1.46948 * 111.00446 * 200.03712 * 5 4 3 23 23 H 1.08998 * 109.47115 * 59.99761 * 1 2 3 24 24 H 1.09003 * 109.47936 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47051 * 300.00278 * 1 2 3 26 26 H 1.09007 * 109.46982 * 60.00025 * 3 2 1 27 27 H 1.09002 * 109.47030 * 300.00178 * 3 2 1 28 28 H 1.08994 * 109.47290 * 303.95683 * 4 3 2 29 29 H 1.08999 * 109.47020 * 183.95729 * 4 3 2 30 30 H 1.09004 * 109.48803 * 63.22349 * 6 5 4 31 31 H 1.09000 * 109.48698 * 303.16091 * 6 5 4 32 32 H 1.09005 * 109.47346 * 300.09519 * 9 7 6 33 33 H 1.08998 * 109.47144 * 60.09690 * 9 7 6 34 34 H 1.08998 * 109.47281 * 180.10197 * 9 7 6 35 35 H 1.09003 * 109.47219 * 296.19808 * 11 10 7 36 36 H 1.09005 * 109.47439 * 56.20002 * 11 10 7 37 37 H 1.09004 * 109.47184 * 176.19565 * 11 10 7 38 38 H 0.96991 * 120.00198 * 5.48747 * 17 16 14 39 39 H 1.08998 * 109.48671 * 56.84549 * 22 5 4 40 40 H 1.08997 * 109.48960 * 296.78131 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1844 0.0006 5 7 3.9761 0.5394 -1.2434 6 6 3.9184 1.4783 -2.3726 7 6 4.3078 0.7483 -3.6601 8 1 4.2938 1.4496 -4.4944 9 6 3.3124 -0.3825 -3.9272 10 7 5.6584 0.1880 -3.5132 11 6 6.0990 -0.4570 -4.7573 12 6 5.7160 -0.7508 -2.3841 13 1 5.0232 -1.5738 -2.5598 14 6 7.1162 -1.2922 -2.2514 15 1 7.9053 -0.9091 -2.8815 16 6 7.3898 -2.2765 -1.3256 17 7 6.4063 -2.8611 -0.6771 18 14 9.1576 -2.7798 -0.9923 19 1 9.5396 -3.8833 -1.9097 20 1 10.0540 -1.6172 -1.2162 21 1 9.2847 -3.2390 0.4142 22 6 5.3267 -0.0208 -1.0966 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3635 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8463 -0.8900 28 1 3.8520 0.5837 0.8532 29 1 3.9786 2.1777 0.0716 30 1 4.6116 2.3011 -2.1972 31 1 2.9057 1.8699 -2.4685 32 1 3.3261 -1.0834 -3.0925 33 1 2.3108 0.0333 -4.0361 34 1 3.5913 -0.9032 -4.8433 35 1 5.4513 -1.3061 -4.9754 36 1 6.0465 0.2600 -5.5767 37 1 7.1262 -0.8034 -4.6430 38 1 5.4860 -2.6576 -0.9059 39 1 5.3407 -0.7222 -0.2624 40 1 6.0358 0.7849 -0.9067 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220553637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:44 Heat of formation + Delta-G solvation = -51.605443 kcal Electronic energy + Delta-G solvation = -19136.804231 eV Core-core repulsion = 16372.033715 eV Total energy + Delta-G solvation = -2764.770517 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.73798 -38.76121 -36.48054 -35.42840 -32.26012 -31.34881 -28.80421 -27.59004 -27.02655 -26.50479 -24.36809 -23.51793 -22.33738 -19.79889 -18.72949 -17.45430 -17.26190 -16.65668 -16.31570 -16.07006 -15.94846 -15.55242 -15.10341 -15.01545 -14.76101 -13.95491 -13.86121 -13.43997 -13.07584 -13.01992 -12.83930 -12.69630 -12.64888 -12.44040 -12.37045 -12.04784 -11.95284 -11.92182 -11.74062 -11.28319 -10.53818 -10.50447 -10.45624 -9.18342 -8.93246 -8.55239 -6.27519 1.53964 1.62166 1.80548 2.58195 2.92192 3.02787 3.23316 3.33379 3.94566 4.02019 4.22823 4.25323 4.29486 4.39602 4.46905 4.53250 4.55133 4.58643 4.61129 4.65259 4.66523 4.79349 4.83216 4.86933 4.88061 4.92637 5.02205 5.11716 5.21168 5.29450 5.57162 5.87393 6.01226 6.15804 6.26251 6.43513 6.53075 6.54183 6.79423 7.50852 8.79298 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022740 B = 0.008148 C = 0.006768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.027944 B = 3435.644757 C = 4136.308703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.410 6.410 3 C 0.077 3.923 4 C 0.050 3.950 5 N -0.540 5.540 6 C 0.068 3.932 7 C 0.075 3.925 8 H 0.099 0.901 9 C -0.160 4.160 10 N -0.542 5.542 11 C 0.044 3.956 12 C 0.217 3.783 13 H -0.029 1.029 14 C -0.599 4.599 15 H 0.050 0.950 16 C -0.026 4.026 17 N -0.931 5.931 18 Si 1.113 2.887 19 H -0.276 1.276 20 H -0.273 1.273 21 H -0.284 1.284 22 C 0.087 3.913 23 H 0.048 0.952 24 H 0.083 0.917 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.032 0.968 31 H 0.096 0.904 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.008 0.992 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.258 0.742 39 H 0.044 0.956 40 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.481 10.077 -2.089 13.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.330 6.330 3 C 0.000 4.000 4 C -0.078 4.078 5 N -0.265 5.265 6 C -0.060 4.060 7 C -0.034 4.034 8 H 0.116 0.884 9 C -0.219 4.219 10 N -0.266 5.266 11 C -0.104 4.104 12 C 0.109 3.891 13 H -0.012 1.012 14 C -0.638 4.638 15 H 0.068 0.932 16 C -0.225 4.225 17 N -0.568 5.568 18 Si 0.936 3.064 19 H -0.202 1.202 20 H -0.198 1.198 21 H -0.210 1.210 22 C -0.042 4.042 23 H 0.067 0.933 24 H 0.102 0.898 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.114 0.886 32 H 0.054 0.946 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.026 0.974 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -8.437 8.964 -1.138 12.362 hybrid contribution -1.094 0.750 -0.776 1.537 sum -9.531 9.714 -1.914 13.743 Atomic orbital electron populations 1.22853 0.80206 1.03114 1.00698 1.88028 1.20791 1.28701 1.95442 1.22547 0.91901 0.84595 1.00946 1.22197 0.95259 0.97999 0.92312 1.62141 1.24947 1.34889 1.04489 1.22196 1.00819 0.92838 0.90136 1.21903 0.87518 0.96361 0.97632 0.88351 1.22149 1.00005 0.99652 1.00103 1.62330 1.23226 1.36275 1.04780 1.22132 1.00046 0.96928 0.91309 1.19099 0.94587 0.88267 0.87120 1.01170 1.22232 0.95148 1.22585 1.23842 0.93163 1.27124 1.08698 0.93438 0.93200 1.70847 1.00456 1.43416 1.42068 0.82991 0.70439 0.76385 0.76624 1.20162 1.19838 1.20988 1.21991 0.86619 0.96131 0.99418 0.93325 0.89820 0.92798 0.90996 0.92286 0.92456 0.91893 0.95018 0.88631 0.94565 0.90979 0.93676 0.97380 0.90379 0.92694 0.93187 0.93772 0.97355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.41 -13.28 10.63 -148.98 -1.58 -14.86 16 3 C 0.08 2.05 6.13 71.98 0.44 2.50 16 4 C 0.05 1.67 5.39 86.30 0.47 2.13 16 5 N -0.54 -21.62 3.89 -895.75 -3.48 -25.10 16 6 C 0.07 2.30 4.86 86.31 0.42 2.72 16 7 C 0.07 2.67 2.97 44.92 0.13 2.80 16 8 H 0.10 2.95 8.13 -2.39 -0.02 2.93 16 9 C -0.16 -5.76 8.37 71.98 0.60 -5.15 16 10 N -0.54 -23.89 4.73 -875.72 -4.14 -28.03 16 11 C 0.04 1.78 8.83 127.69 1.13 2.91 16 12 C 0.22 11.36 1.19 44.17 0.05 11.42 16 13 H -0.03 -1.72 5.62 -2.38 -0.01 -1.74 16 14 C -0.60 -34.20 7.73 25.60 0.20 -34.01 16 15 H 0.05 2.88 6.69 -2.91 -0.02 2.86 16 16 C -0.03 -1.47 5.23 84.65 0.44 -1.03 16 17 N -0.93 -57.69 12.87 21.45 0.28 -57.41 16 18 Si 1.11 51.21 29.91 68.60 2.05 53.26 16 19 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 22 C 0.09 4.32 4.55 86.31 0.39 4.71 16 23 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.06 1.39 6.79 -2.39 -0.02 1.37 16 28 H 0.06 2.13 7.84 -2.39 -0.02 2.11 16 29 H 0.06 1.83 7.99 -2.39 -0.02 1.81 16 30 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.10 2.62 6.76 -2.39 -0.02 2.61 16 32 H 0.04 1.59 5.95 -2.38 -0.01 1.58 16 33 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.04 1.57 6.56 -2.39 -0.02 1.56 16 35 H 0.01 0.32 6.58 -2.39 -0.02 0.31 16 36 H 0.08 2.55 8.13 -2.38 -0.02 2.53 16 37 H 0.05 2.41 6.38 -2.39 -0.02 2.40 16 38 H 0.26 16.55 6.27 -92.71 -0.58 15.97 16 39 H 0.04 2.48 6.37 -2.39 -0.02 2.46 16 40 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 Total: -1.00 -68.30 302.63 -0.17 -68.47 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 1.19 Total: 12.80 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: 5.52 Total: -9.13 kcal Atomic # 7 Polarization: -103.20 SS G_CDS: -7.34 Total: -110.54 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -1.58 Total: -14.86 kcal Atomic # 14 Polarization: 51.21 SS G_CDS: 2.05 Total: 53.26 kcal Total: -68.30 -0.17 -68.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220553637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.867 kcal (2) G-P(sol) polarization free energy of solvation -68.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds