Wall clock time and date at job start Mon Mar 30 2020 04:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 114.00078 * 2 1 4 4 C 1.52996 * 109.46775 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.47647 * 62.38873 * 4 3 2 6 6 C 1.46963 * 110.99516 * 52.38584 * 5 4 3 7 7 H 1.08999 * 109.49253 * 303.15935 * 6 5 4 8 8 C 1.52994 * 109.50562 * 63.21822 * 6 5 4 9 9 C 1.53053 * 109.35655 * 183.19314 * 6 5 4 10 10 N 1.46957 * 109.36616 * 301.59557 * 9 6 5 11 11 C 1.46899 * 111.00094 * 183.19163 * 10 9 6 12 12 C 1.46956 * 110.87574 * 59.32561 * 10 9 6 13 13 C 1.46948 * 111.00375 * 176.18767 * 5 4 3 14 14 H 1.09004 * 109.50882 * 296.79335 * 13 5 4 15 15 C 1.50706 * 109.48579 * 56.84258 * 13 5 4 16 16 H 1.07992 * 119.99904 * 5.43763 * 15 13 5 17 17 C 1.37879 * 119.99770 * 185.44047 * 15 13 5 18 18 N 1.31510 * 119.99807 * 198.23279 * 17 15 13 19 19 Si 1.86804 * 120.00055 * 18.22667 * 17 15 13 20 20 H 1.48504 * 109.46993 * 180.02562 * 19 17 15 21 21 H 1.48505 * 109.47113 * 299.99907 * 19 17 15 22 22 H 1.48494 * 109.46922 * 60.00091 * 19 17 15 23 23 H 1.09003 * 109.46852 * 60.00292 * 1 2 3 24 24 H 1.09004 * 109.46604 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46747 * 299.99714 * 1 2 3 26 26 H 1.08994 * 109.46973 * 59.99631 * 3 2 1 27 27 H 1.09004 * 109.46729 * 299.99959 * 3 2 1 28 28 H 1.08998 * 109.47415 * 302.37882 * 4 3 2 29 29 H 1.09007 * 109.46470 * 182.38720 * 4 3 2 30 30 H 1.09001 * 109.47039 * 179.89729 * 8 6 5 31 31 H 1.08998 * 109.47023 * 299.89496 * 8 6 5 32 32 H 1.09001 * 109.47751 * 59.89724 * 8 6 5 33 33 H 1.09005 * 109.48723 * 181.63334 * 9 6 5 34 34 H 1.08996 * 109.49021 * 61.56898 * 9 6 5 35 35 H 1.09002 * 109.47204 * 300.15596 * 11 10 9 36 36 H 1.08997 * 109.46928 * 60.15723 * 11 10 9 37 37 H 1.08997 * 109.47050 * 180.16090 * 11 10 9 38 38 H 1.09004 * 109.49194 * 180.71010 * 12 10 9 39 39 H 1.09002 * 109.48892 * 60.64898 * 12 10 9 40 40 H 0.97003 * 119.99940 * 354.29440 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9725 0.5062 -1.2282 6 6 3.4077 1.1566 -2.4189 7 1 2.3205 1.1731 -2.3431 8 6 3.9344 2.5897 -2.5163 9 6 3.8207 0.3747 -3.6681 10 7 5.2872 0.3209 -3.7466 11 6 5.7242 -0.3575 -4.9741 12 6 5.8519 -0.3295 -2.5559 13 6 5.4389 0.4523 -1.3067 14 1 5.8379 1.4652 -1.3630 15 6 5.9831 -0.2348 -0.0807 16 1 5.3064 -0.6731 0.6377 17 6 7.3449 -0.3037 0.1236 18 7 7.8396 -1.1835 0.9667 19 14 8.4873 0.8524 -0.7973 20 1 9.8925 0.5772 -0.4037 21 1 8.3326 0.6406 -2.2590 22 1 8.1448 2.2578 -0.4617 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8463 -0.8900 28 1 3.8546 0.6071 0.8670 29 1 3.9788 2.1795 0.0422 30 1 3.5166 3.0710 -3.4006 31 1 3.6401 3.1463 -1.6265 32 1 5.0217 2.5730 -2.5914 33 1 3.4271 0.8717 -4.5548 34 1 3.4221 -0.6382 -3.6114 35 1 5.3337 -1.3752 -4.9855 36 1 5.3497 0.1851 -5.8420 37 1 6.8133 -0.3860 -5.0055 38 1 6.9392 -0.3460 -2.6316 39 1 5.4764 -1.3504 -2.4866 40 1 7.2438 -1.7268 1.5059 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220558550.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:43 Heat of formation + Delta-G solvation = -21.695284 kcal Electronic energy + Delta-G solvation = -19318.245762 eV Core-core repulsion = 16554.772248 eV Total energy + Delta-G solvation = -2763.473515 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.28464 -37.38071 -34.95965 -33.15505 -30.95869 -30.07252 -27.07463 -26.57004 -25.63779 -24.88157 -22.92703 -21.04025 -20.76674 -17.83230 -17.52084 -16.17342 -16.08134 -15.17578 -14.79806 -14.43971 -14.30901 -14.18184 -13.55902 -13.38173 -13.08982 -12.67436 -12.12095 -12.02259 -11.73496 -11.65271 -11.47645 -11.29493 -11.03515 -10.98608 -10.72387 -10.50062 -10.24166 -10.08658 -9.86020 -9.51570 -9.29681 -8.77932 -8.19819 -7.70582 -7.16036 -6.43628 -4.02125 3.41494 3.45776 3.63154 4.13647 4.49965 4.60665 4.77826 5.28578 5.32437 5.38202 5.43367 5.52101 5.63262 5.64940 5.68125 5.72931 5.78508 5.85758 5.92343 5.97289 6.14639 6.18845 6.20978 6.31810 6.44879 6.49461 6.56515 6.70012 6.80099 6.94825 7.27412 7.49114 7.58490 7.68595 7.88255 8.11653 8.38592 8.51269 9.04111 9.65868 10.97252 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.019417 B = 0.010289 C = 0.007886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.698908 B = 2720.640026 C = 3549.940541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.060 3.940 4 C 0.069 3.931 5 N -0.511 5.511 6 C 0.075 3.925 7 H 0.074 0.926 8 C -0.177 4.177 9 C 0.069 3.931 10 N -0.549 5.549 11 C 0.027 3.973 12 C 0.055 3.945 13 C 0.198 3.802 14 H 0.004 0.996 15 C -0.591 4.591 16 H 0.066 0.934 17 C 0.031 3.969 18 N -0.904 5.904 19 Si 1.041 2.959 20 H -0.287 1.287 21 H -0.272 1.272 22 H -0.285 1.285 23 H 0.033 0.967 24 H 0.080 0.920 25 H 0.033 0.967 26 H 0.042 0.958 27 H 0.045 0.955 28 H 0.091 0.909 29 H 0.041 0.959 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.035 0.965 35 H 0.019 0.981 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.034 0.966 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.547 5.820 -7.174 14.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.286 6.286 3 C -0.017 4.017 4 C -0.059 4.059 5 N -0.235 5.235 6 C -0.034 4.034 7 H 0.091 0.909 8 C -0.236 4.236 9 C -0.060 4.060 10 N -0.274 5.274 11 C -0.122 4.122 12 C -0.073 4.073 13 C 0.090 3.910 14 H 0.021 0.979 15 C -0.629 4.629 16 H 0.084 0.916 17 C -0.175 4.175 18 N -0.539 5.539 19 Si 0.870 3.130 20 H -0.213 1.213 21 H -0.198 1.198 22 H -0.211 1.211 23 H 0.052 0.948 24 H 0.099 0.901 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.110 0.890 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.038 0.962 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.052 0.948 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.817 5.982 -7.413 12.980 hybrid contribution -1.899 -0.140 0.226 1.917 sum -10.716 5.841 -7.187 14.163 Atomic orbital electron populations 1.22685 0.82787 1.02161 0.99072 1.88113 1.17883 1.27497 1.95072 1.22788 0.95229 0.84769 0.98897 1.21952 0.90480 0.97638 0.95826 1.62290 1.11545 1.50330 0.99338 1.21781 0.98360 0.91812 0.91452 0.90851 1.22360 1.03590 0.97556 1.00117 1.22028 0.88395 0.98724 0.96805 1.62309 1.08435 1.53563 1.03107 1.22287 1.00820 0.96212 0.92841 1.22883 0.99254 0.96724 0.88396 1.19589 0.83133 0.94369 0.93898 0.97874 1.21989 0.93728 1.40251 1.06966 0.91589 1.25682 0.96723 0.96710 0.98335 1.70846 1.38645 1.19059 1.25309 0.84093 0.76157 0.76226 0.76531 1.21251 1.19813 1.21094 0.94797 0.90123 0.94826 0.93956 0.93731 0.89024 0.94103 0.93436 0.93674 0.90854 0.91807 0.94722 0.96237 0.92383 0.91853 0.90691 0.94778 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.37 -6.48 10.61 -35.23 -0.37 -6.86 16 3 C 0.06 0.97 5.57 37.16 0.21 1.18 16 4 C 0.07 1.37 4.56 -3.82 -0.02 1.35 16 5 N -0.51 -11.00 4.48 -219.95 -0.99 -11.98 16 6 C 0.08 1.36 2.47 -67.65 -0.17 1.19 16 7 H 0.07 1.23 5.96 -51.93 -0.31 0.92 16 8 C -0.18 -2.97 8.37 37.15 0.31 -2.66 16 9 C 0.07 1.22 5.05 -3.77 -0.02 1.20 16 10 N -0.55 -10.62 4.29 -242.76 -1.04 -11.66 16 11 C 0.03 0.44 9.60 60.06 0.58 1.01 16 12 C 0.05 1.26 4.59 -3.77 -0.02 1.24 16 13 C 0.20 4.77 1.15 -68.81 -0.08 4.69 16 14 H 0.00 0.10 5.00 -51.93 -0.26 -0.16 16 15 C -0.59 -16.48 8.11 -34.44 -0.28 -16.76 16 16 H 0.07 2.02 6.92 -52.49 -0.36 1.65 16 17 C 0.03 0.89 5.33 -17.82 -0.10 0.80 16 18 N -0.90 -27.63 13.69 55.43 0.76 -26.87 16 19 Si 1.04 25.33 26.40 -169.99 -4.49 20.84 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.27 -6.20 5.59 56.52 0.32 -5.89 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.04 0.66 6.10 -51.93 -0.32 0.34 16 28 H 0.09 2.07 6.53 -51.93 -0.34 1.73 16 29 H 0.04 0.79 6.79 -51.92 -0.35 0.44 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.04 0.72 6.66 -51.93 -0.35 0.37 16 32 H 0.07 1.41 5.94 -51.93 -0.31 1.10 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 1.00 8.13 -51.93 -0.42 0.58 16 38 H 0.07 1.79 4.84 -51.93 -0.25 1.54 16 39 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.27 8.22 8.73 -40.82 -0.36 7.86 16 LS Contribution 298.10 15.07 4.49 4.49 Total: -1.00 -30.58 298.10 -6.84 -37.42 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -6.73 Total: -0.11 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: 1.53 Total: -5.27 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: -1.27 Total: -50.52 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -0.37 Total: -6.86 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -4.49 Total: 20.84 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.58 -6.84 -37.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220558550.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.724 kcal (2) G-P(sol) polarization free energy of solvation -30.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds