Wall clock time and date at job start Mon Mar 30 2020 04:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 114.00078 * 2 1 4 4 C 1.52996 * 109.46775 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.47647 * 62.38873 * 4 3 2 6 6 C 1.46963 * 110.99516 * 52.38584 * 5 4 3 7 7 H 1.08999 * 109.49253 * 303.15935 * 6 5 4 8 8 C 1.52994 * 109.50562 * 63.21822 * 6 5 4 9 9 C 1.53053 * 109.35655 * 183.19314 * 6 5 4 10 10 N 1.46957 * 109.36616 * 301.59557 * 9 6 5 11 11 C 1.46899 * 111.00094 * 183.19163 * 10 9 6 12 12 C 1.46956 * 110.87574 * 59.32561 * 10 9 6 13 13 C 1.46948 * 111.00375 * 176.18767 * 5 4 3 14 14 H 1.09004 * 109.50882 * 296.79335 * 13 5 4 15 15 C 1.50706 * 109.48579 * 56.84258 * 13 5 4 16 16 H 1.07992 * 119.99904 * 5.43763 * 15 13 5 17 17 C 1.37879 * 119.99770 * 185.44047 * 15 13 5 18 18 N 1.31510 * 119.99807 * 198.23279 * 17 15 13 19 19 Si 1.86804 * 120.00055 * 18.22667 * 17 15 13 20 20 H 1.48504 * 109.46993 * 180.02562 * 19 17 15 21 21 H 1.48505 * 109.47113 * 299.99907 * 19 17 15 22 22 H 1.48494 * 109.46922 * 60.00091 * 19 17 15 23 23 H 1.09003 * 109.46852 * 60.00292 * 1 2 3 24 24 H 1.09004 * 109.46604 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46747 * 299.99714 * 1 2 3 26 26 H 1.08994 * 109.46973 * 59.99631 * 3 2 1 27 27 H 1.09004 * 109.46729 * 299.99959 * 3 2 1 28 28 H 1.08998 * 109.47415 * 302.37882 * 4 3 2 29 29 H 1.09007 * 109.46470 * 182.38720 * 4 3 2 30 30 H 1.09001 * 109.47039 * 179.89729 * 8 6 5 31 31 H 1.08998 * 109.47023 * 299.89496 * 8 6 5 32 32 H 1.09001 * 109.47751 * 59.89724 * 8 6 5 33 33 H 1.09005 * 109.48723 * 181.63334 * 9 6 5 34 34 H 1.08996 * 109.49021 * 61.56898 * 9 6 5 35 35 H 1.09002 * 109.47204 * 300.15596 * 11 10 9 36 36 H 1.08997 * 109.46928 * 60.15723 * 11 10 9 37 37 H 1.08997 * 109.47050 * 180.16090 * 11 10 9 38 38 H 1.09004 * 109.49194 * 180.71010 * 12 10 9 39 39 H 1.09002 * 109.48892 * 60.64898 * 12 10 9 40 40 H 0.97003 * 119.99940 * 354.29440 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9725 0.5062 -1.2282 6 6 3.4077 1.1566 -2.4189 7 1 2.3205 1.1731 -2.3431 8 6 3.9344 2.5897 -2.5163 9 6 3.8207 0.3747 -3.6681 10 7 5.2872 0.3209 -3.7466 11 6 5.7242 -0.3575 -4.9741 12 6 5.8519 -0.3295 -2.5559 13 6 5.4389 0.4523 -1.3067 14 1 5.8379 1.4652 -1.3630 15 6 5.9831 -0.2348 -0.0807 16 1 5.3064 -0.6731 0.6377 17 6 7.3449 -0.3037 0.1236 18 7 7.8396 -1.1835 0.9667 19 14 8.4873 0.8524 -0.7973 20 1 9.8925 0.5772 -0.4037 21 1 8.3326 0.6406 -2.2590 22 1 8.1448 2.2578 -0.4617 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8463 -0.8900 28 1 3.8546 0.6071 0.8670 29 1 3.9788 2.1795 0.0422 30 1 3.5166 3.0710 -3.4006 31 1 3.6401 3.1463 -1.6265 32 1 5.0217 2.5730 -2.5914 33 1 3.4271 0.8717 -4.5548 34 1 3.4221 -0.6382 -3.6114 35 1 5.3337 -1.3752 -4.9855 36 1 5.3497 0.1851 -5.8420 37 1 6.8133 -0.3860 -5.0055 38 1 6.9392 -0.3460 -2.6316 39 1 5.4764 -1.3504 -2.4866 40 1 7.2438 -1.7268 1.5059 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220558550.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:43 Heat of formation + Delta-G solvation = -46.169269 kcal Electronic energy + Delta-G solvation = -19319.307034 eV Core-core repulsion = 16554.772248 eV Total energy + Delta-G solvation = -2764.534786 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.85229 -38.67655 -36.46457 -35.21102 -32.69125 -31.61832 -28.49306 -27.88573 -26.86998 -26.78868 -24.35996 -22.86528 -22.30687 -19.80727 -19.29588 -17.54611 -17.45229 -16.62637 -16.35186 -15.98527 -15.74096 -15.53601 -15.42914 -14.83391 -14.53379 -14.20334 -13.95934 -13.46506 -13.27099 -13.11396 -12.96124 -12.68992 -12.48705 -12.42539 -12.26469 -12.14156 -11.87614 -11.80255 -11.58568 -11.17250 -10.83570 -10.50401 -10.37672 -9.25686 -8.83349 -8.74494 -6.33063 1.44585 1.50038 1.70508 2.46067 2.93771 2.99632 3.18401 3.25999 3.98908 4.05040 4.24138 4.28771 4.30058 4.39502 4.48306 4.51207 4.56997 4.59518 4.64792 4.67477 4.69798 4.76628 4.83981 4.85847 4.96964 4.99017 5.05951 5.10655 5.18435 5.28884 5.57376 5.78710 6.02857 6.13682 6.16031 6.33163 6.41277 6.70060 6.79030 7.44460 8.64883 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.019417 B = 0.010289 C = 0.007886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.698908 B = 2720.640026 C = 3549.940541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.070 3.930 4 C 0.070 3.930 5 N -0.531 5.531 6 C 0.072 3.928 7 H 0.093 0.907 8 C -0.169 4.169 9 C 0.068 3.932 10 N -0.551 5.551 11 C 0.025 3.975 12 C 0.066 3.934 13 C 0.205 3.795 14 H 0.002 0.998 15 C -0.588 4.588 16 H 0.022 0.978 17 C -0.018 4.018 18 N -0.936 5.936 19 Si 1.081 2.919 20 H -0.288 1.288 21 H -0.246 1.246 22 H -0.267 1.267 23 H 0.053 0.947 24 H 0.087 0.913 25 H 0.049 0.951 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.044 0.956 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.103 0.897 34 H 0.020 0.980 35 H 0.018 0.982 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.004 0.996 40 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.047 8.020 -9.859 17.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C -0.007 4.007 4 C -0.058 4.058 5 N -0.256 5.256 6 C -0.036 4.036 7 H 0.111 0.889 8 C -0.228 4.228 9 C -0.060 4.060 10 N -0.275 5.275 11 C -0.123 4.123 12 C -0.062 4.062 13 C 0.096 3.904 14 H 0.019 0.981 15 C -0.626 4.626 16 H 0.040 0.960 17 C -0.216 4.216 18 N -0.573 5.573 19 Si 0.903 3.097 20 H -0.214 1.214 21 H -0.170 1.170 22 H -0.193 1.193 23 H 0.071 0.929 24 H 0.105 0.895 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.121 0.879 34 H 0.039 0.961 35 H 0.037 0.963 36 H 0.110 0.890 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.023 0.977 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.365 8.186 -10.114 16.636 hybrid contribution -1.582 -0.879 1.088 2.111 sum -11.947 7.307 -9.027 16.662 Atomic orbital electron populations 1.22895 0.80146 1.03284 1.00764 1.88053 1.20849 1.28374 1.95440 1.22678 0.92202 0.84806 1.00975 1.21872 0.93620 0.96589 0.93728 1.62168 1.09761 1.52256 1.01404 1.21947 0.99261 0.92535 0.89859 0.88896 1.22262 1.01943 0.96669 1.01929 1.22166 0.87232 0.98427 0.98199 1.62283 1.09537 1.53125 1.02596 1.22402 1.01085 0.96510 0.92273 1.22505 0.98566 0.95102 0.90019 1.19324 0.85130 0.93535 0.92392 0.98089 1.22129 0.93314 1.39396 1.07773 0.95997 1.27056 0.98836 0.97182 0.98545 1.70977 1.38346 1.20858 1.27070 0.83601 0.74109 0.75006 0.76982 1.21400 1.17049 1.19273 0.92891 0.89452 0.93201 0.91823 0.91435 0.93475 0.93767 0.90308 0.93117 0.93309 0.87894 0.96121 0.96288 0.88991 0.91806 0.91845 0.97729 0.93987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 11.01 113.37 1.25 1.83 16 2 O -0.41 -13.97 10.61 -148.98 -1.58 -15.55 16 3 C 0.07 2.14 5.57 71.98 0.40 2.54 16 4 C 0.07 2.80 4.56 86.30 0.39 3.20 16 5 N -0.53 -22.79 4.48 -849.78 -3.81 -26.60 16 6 C 0.07 2.41 2.47 44.92 0.11 2.52 16 7 H 0.09 2.75 5.96 -2.39 -0.01 2.74 16 8 C -0.17 -5.05 8.37 71.98 0.60 -4.45 16 9 C 0.07 2.17 5.05 86.31 0.44 2.61 16 10 N -0.55 -19.92 4.29 -921.95 -3.95 -23.87 16 11 C 0.03 0.73 9.60 127.69 1.23 1.96 16 12 C 0.07 3.04 4.59 86.31 0.40 3.44 16 13 C 0.20 9.96 1.15 44.18 0.05 10.01 16 14 H 0.00 0.09 5.00 -2.39 -0.01 0.08 16 15 C -0.59 -34.36 8.11 25.60 0.21 -34.15 16 16 H 0.02 1.44 6.92 -2.91 -0.02 1.42 16 17 C -0.02 -1.05 5.33 84.66 0.45 -0.59 16 18 N -0.94 -59.88 13.69 21.45 0.29 -59.59 16 19 Si 1.08 51.37 26.40 68.60 1.81 53.18 16 20 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 21 H -0.25 -10.60 5.59 99.48 0.56 -10.05 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.09 1.84 8.14 -2.39 -0.02 1.83 16 25 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.07 1.76 6.10 -2.38 -0.01 1.74 16 28 H 0.05 2.27 6.53 -2.39 -0.02 2.25 16 29 H 0.04 1.70 6.79 -2.38 -0.02 1.69 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.05 1.44 6.66 -2.39 -0.02 1.43 16 32 H 0.05 1.72 5.94 -2.39 -0.01 1.70 16 33 H 0.10 2.55 8.14 -2.38 -0.02 2.53 16 34 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.06 1.84 8.13 -2.39 -0.02 1.82 16 38 H 0.06 3.00 4.84 -2.38 -0.01 2.99 16 39 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.25 16.42 8.73 -92.71 -0.81 15.61 16 Total: -1.00 -70.12 298.10 -0.90 -71.02 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.81 Total: 12.50 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: 5.52 Total: -11.10 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -7.47 Total: -110.05 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -1.58 Total: -15.55 kcal Atomic # 14 Polarization: 51.37 SS G_CDS: 1.81 Total: 53.18 kcal Total: -70.12 -0.90 -71.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220558550.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.848 kcal (2) G-P(sol) polarization free energy of solvation -70.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds