Wall clock time and date at job start Mon Mar 30 2020 04:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99759 * 2 1 4 4 C 1.53003 * 109.47038 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.46755 * 68.39041 * 4 3 2 6 6 C 1.46957 * 111.00114 * 63.73856 * 5 4 3 7 7 C 1.53051 * 109.36423 * 176.81210 * 6 5 4 8 8 H 1.08998 * 109.48845 * 178.39114 * 7 6 5 9 9 C 1.52993 * 109.48989 * 298.43424 * 7 6 5 10 10 N 1.46956 * 109.36217 * 58.40251 * 7 6 5 11 11 C 1.46900 * 110.99873 * 176.81396 * 10 7 6 12 12 C 1.46957 * 110.88066 * 300.67778 * 10 7 6 13 13 C 1.46956 * 110.99662 * 299.94030 * 5 4 3 14 14 H 1.08999 * 109.49503 * 63.22143 * 13 5 4 15 15 C 1.50706 * 109.48934 * 303.17574 * 13 5 4 16 16 H 1.07996 * 119.99596 * 0.02562 * 15 13 5 17 17 C 1.37876 * 119.99966 * 180.02562 * 15 13 5 18 18 N 1.31517 * 120.00157 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 120.00027 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47022 * 89.99791 * 19 17 15 21 21 H 1.48502 * 109.47113 * 210.00064 * 19 17 15 22 22 H 1.48499 * 109.46905 * 329.99985 * 19 17 15 23 23 H 1.09008 * 109.47007 * 299.99637 * 1 2 3 24 24 H 1.09001 * 109.47168 * 59.99412 * 1 2 3 25 25 H 1.08999 * 109.47162 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46839 * 60.00301 * 3 2 1 27 27 H 1.08992 * 109.47356 * 300.00246 * 3 2 1 28 28 H 1.09000 * 109.46899 * 308.39010 * 4 3 2 29 29 H 1.08999 * 109.46976 * 188.38875 * 4 3 2 30 30 H 1.08990 * 109.48756 * 56.83978 * 6 5 4 31 31 H 1.09006 * 109.50582 * 296.78937 * 6 5 4 32 32 H 1.09004 * 109.47222 * 59.99868 * 9 7 6 33 33 H 1.09007 * 109.47162 * 300.00097 * 9 7 6 34 34 H 1.08993 * 109.47277 * 180.02562 * 9 7 6 35 35 H 1.08993 * 109.47414 * 59.99511 * 11 10 7 36 36 H 1.09002 * 109.47166 * 180.02562 * 11 10 7 37 37 H 1.09000 * 109.46849 * 299.99345 * 11 10 7 38 38 H 1.09005 * 109.48953 * 299.35644 * 12 10 7 39 39 H 1.09004 * 109.50715 * 179.30151 * 12 10 7 40 40 H 0.97004 * 120.00253 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9838 0.6374 -1.2868 6 6 3.6586 1.5522 -2.3899 7 6 4.2111 0.9845 -3.6995 8 1 3.9464 1.6472 -4.5234 9 6 5.7339 0.8713 -3.6047 10 7 3.6342 -0.3463 -3.9354 11 6 4.0826 -0.8938 -5.2228 12 6 3.9594 -1.2612 -2.8323 13 6 3.4069 -0.6935 -1.5227 14 1 2.3220 -0.6129 -1.5903 15 6 3.7730 -1.6094 -0.3832 16 1 4.3737 -1.2400 0.4348 17 6 3.3411 -2.9187 -0.3850 18 7 2.6100 -3.3686 -1.3814 19 14 3.7942 -4.0537 1.0277 20 1 2.7519 -3.9719 2.0823 21 1 3.8871 -5.4500 0.5307 22 1 5.1039 -3.6415 1.5933 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6886 1.8464 0.8901 27 1 1.6886 1.8464 -0.8899 28 1 3.8469 0.5200 0.8064 29 1 3.9778 2.1696 0.1506 30 1 4.1071 2.5269 -2.1982 31 1 2.5766 1.6587 -2.4676 32 1 5.9983 0.2080 -2.7811 33 1 6.1613 1.8584 -3.4277 34 1 6.1270 0.4675 -4.5376 35 1 5.1692 -0.9788 -5.2228 36 1 3.6406 -1.8789 -5.3724 37 1 3.7700 -0.2296 -6.0286 38 1 5.0415 -1.3673 -2.7548 39 1 3.5111 -2.2361 -3.0238 40 1 2.3058 -4.2897 -1.3826 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220559668.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:18 Heat of formation + Delta-G solvation = -14.143172 kcal Electronic energy + Delta-G solvation = -19718.203353 eV Core-core repulsion = 16955.057323 eV Total energy + Delta-G solvation = -2763.146031 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.05121 -37.03315 -34.61310 -32.85536 -30.58057 -29.29741 -27.23345 -26.07689 -25.27033 -24.51425 -23.03268 -21.53268 -20.33953 -17.62883 -16.28487 -15.79699 -15.68913 -14.93515 -14.64827 -14.23669 -14.08421 -13.69489 -13.40116 -13.21862 -12.67655 -12.21615 -12.02254 -11.63105 -11.52374 -11.29283 -11.19139 -10.91574 -10.84056 -10.72522 -10.59067 -10.34635 -10.15010 -9.94365 -9.82691 -9.43253 -8.74619 -8.69572 -8.23270 -7.36241 -6.87087 -5.81683 -3.80624 3.40801 3.46794 3.50199 4.54896 4.60380 4.89514 5.12973 5.52257 5.54322 5.73489 5.75185 5.80386 5.83806 5.93691 5.98408 5.99986 6.07796 6.10423 6.15662 6.23565 6.34109 6.36524 6.45102 6.48528 6.59023 6.76917 6.84336 7.09345 7.22281 7.51327 7.86029 7.94175 8.02306 8.06330 8.20007 8.31455 8.51742 8.81903 9.22384 9.80084 11.26137 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.018439 B = 0.011686 C = 0.008951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.120509 B = 2395.440043 C = 3127.459598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.330 6.330 3 C 0.025 3.975 4 C 0.066 3.934 5 N -0.532 5.532 6 C 0.061 3.939 7 C 0.085 3.915 8 H 0.064 0.936 9 C -0.175 4.175 10 N -0.543 5.543 11 C 0.028 3.972 12 C 0.061 3.939 13 C 0.217 3.783 14 H 0.047 0.953 15 C -0.476 4.476 16 H 0.056 0.944 17 C 0.063 3.937 18 N -0.894 5.894 19 Si 0.887 3.113 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.277 1.277 23 H 0.023 0.977 24 H 0.027 0.973 25 H 0.081 0.919 26 H 0.031 0.969 27 H 0.036 0.964 28 H 0.091 0.909 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.029 0.971 32 H 0.078 0.922 33 H 0.046 0.954 34 H 0.040 0.960 35 H 0.018 0.982 36 H 0.062 0.938 37 H 0.050 0.950 38 H 0.016 0.984 39 H 0.105 0.895 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.124 8.452 -2.051 8.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.247 6.247 3 C -0.053 4.053 4 C -0.063 4.063 5 N -0.257 5.257 6 C -0.068 4.068 7 C -0.024 4.024 8 H 0.082 0.918 9 C -0.233 4.233 10 N -0.267 5.267 11 C -0.121 4.121 12 C -0.066 4.066 13 C 0.111 3.889 14 H 0.064 0.936 15 C -0.516 4.516 16 H 0.074 0.926 17 C -0.137 4.137 18 N -0.534 5.534 19 Si 0.716 3.284 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.202 1.202 23 H 0.042 0.958 24 H 0.046 0.954 25 H 0.099 0.901 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.109 0.891 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.037 0.963 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.034 0.966 39 H 0.123 0.877 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.093 8.087 -2.118 8.360 hybrid contribution -0.051 -0.400 0.691 0.800 sum -0.145 7.687 -1.428 7.819 Atomic orbital electron populations 1.22628 0.84055 1.02122 0.97906 1.88596 1.16894 1.24898 1.94353 1.23247 0.97463 0.86376 0.98257 1.22134 0.89763 0.99163 0.95204 1.62425 1.59163 1.04432 0.99642 1.22059 0.97688 0.95394 0.91704 1.21617 0.92471 0.91971 0.96337 0.91815 1.22309 0.97465 1.01836 1.01717 1.62549 1.57974 1.03009 1.03140 1.22268 0.97548 0.99968 0.92284 1.22608 0.97342 0.97039 0.89615 1.19538 0.95115 0.82458 0.91756 0.93557 1.20934 1.30963 0.94665 1.04991 0.92564 1.24794 0.95323 0.97962 0.95651 1.69877 1.36909 1.15739 1.30864 0.86676 0.78595 0.80122 0.82967 1.21044 1.21687 1.20241 0.95797 0.95427 0.90070 0.95038 0.94550 0.89055 0.91891 0.92456 0.95258 0.90342 0.93477 0.94069 0.96308 0.91949 0.93087 0.96621 0.87726 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.66 16 2 O -0.33 -7.24 6.71 -35.23 -0.24 -7.47 16 3 C 0.03 0.47 5.73 37.16 0.21 0.68 16 4 C 0.07 1.27 5.59 -3.82 -0.02 1.25 16 5 N -0.53 -11.34 4.04 -227.87 -0.92 -12.26 16 6 C 0.06 1.13 4.67 -3.77 -0.02 1.12 16 7 C 0.09 1.57 2.97 -67.66 -0.20 1.37 16 8 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 9 C -0.17 -3.04 8.37 37.15 0.31 -2.73 16 10 N -0.54 -11.38 4.92 -234.73 -1.15 -12.54 16 11 C 0.03 0.50 9.28 60.06 0.56 1.06 16 12 C 0.06 1.49 4.28 -3.77 -0.02 1.47 16 13 C 0.22 5.39 1.32 -68.80 -0.09 5.30 16 14 H 0.05 1.30 5.53 -51.93 -0.29 1.01 16 15 C -0.48 -12.87 7.04 -34.44 -0.24 -13.11 16 16 H 0.06 1.54 6.45 -52.49 -0.34 1.20 16 17 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 18 N -0.89 -25.40 11.34 55.43 0.63 -24.77 16 19 Si 0.89 21.67 29.54 -169.99 -5.02 16.64 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H 0.02 0.37 8.14 -51.92 -0.42 -0.06 16 24 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.04 0.66 6.18 -51.93 -0.32 0.34 16 28 H 0.09 1.93 6.28 -51.93 -0.33 1.60 16 29 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 30 H 0.06 0.94 8.13 -51.93 -0.42 0.51 16 31 H 0.03 0.58 6.39 -51.93 -0.33 0.25 16 32 H 0.08 1.59 5.94 -51.93 -0.31 1.28 16 33 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 34 H 0.04 0.67 6.48 -51.93 -0.34 0.33 16 35 H 0.02 0.32 6.39 -51.93 -0.33 -0.01 16 36 H 0.06 1.13 8.13 -51.93 -0.42 0.71 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.02 0.40 6.34 -51.93 -0.33 0.07 16 39 H 0.10 2.87 6.12 -51.93 -0.32 2.55 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 295.24 15.07 4.45 4.45 Total: -1.00 -28.90 295.24 -7.33 -36.23 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -6.59 Total: 0.02 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 1.51 Total: -0.30 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: -1.45 Total: -49.57 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -0.24 Total: -7.47 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.90 -7.33 -36.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220559668.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.087 kcal (2) G-P(sol) polarization free energy of solvation -28.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds