Wall clock time and date at job start Mon Mar 30 2020 04:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99759 * 2 1 4 4 C 1.53003 * 109.47038 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.46755 * 68.39041 * 4 3 2 6 6 C 1.46957 * 111.00114 * 63.73856 * 5 4 3 7 7 C 1.53051 * 109.36423 * 176.81210 * 6 5 4 8 8 H 1.08998 * 109.48845 * 178.39114 * 7 6 5 9 9 C 1.52993 * 109.48989 * 298.43424 * 7 6 5 10 10 N 1.46956 * 109.36217 * 58.40251 * 7 6 5 11 11 C 1.46900 * 110.99873 * 176.81396 * 10 7 6 12 12 C 1.46957 * 110.88066 * 300.67778 * 10 7 6 13 13 C 1.46956 * 110.99662 * 299.94030 * 5 4 3 14 14 H 1.08999 * 109.49503 * 63.22143 * 13 5 4 15 15 C 1.50706 * 109.48934 * 303.17574 * 13 5 4 16 16 H 1.07996 * 119.99596 * 0.02562 * 15 13 5 17 17 C 1.37876 * 119.99966 * 180.02562 * 15 13 5 18 18 N 1.31517 * 120.00157 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 120.00027 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47022 * 89.99791 * 19 17 15 21 21 H 1.48502 * 109.47113 * 210.00064 * 19 17 15 22 22 H 1.48499 * 109.46905 * 329.99985 * 19 17 15 23 23 H 1.09008 * 109.47007 * 299.99637 * 1 2 3 24 24 H 1.09001 * 109.47168 * 59.99412 * 1 2 3 25 25 H 1.08999 * 109.47162 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46839 * 60.00301 * 3 2 1 27 27 H 1.08992 * 109.47356 * 300.00246 * 3 2 1 28 28 H 1.09000 * 109.46899 * 308.39010 * 4 3 2 29 29 H 1.08999 * 109.46976 * 188.38875 * 4 3 2 30 30 H 1.08990 * 109.48756 * 56.83978 * 6 5 4 31 31 H 1.09006 * 109.50582 * 296.78937 * 6 5 4 32 32 H 1.09004 * 109.47222 * 59.99868 * 9 7 6 33 33 H 1.09007 * 109.47162 * 300.00097 * 9 7 6 34 34 H 1.08993 * 109.47277 * 180.02562 * 9 7 6 35 35 H 1.08993 * 109.47414 * 59.99511 * 11 10 7 36 36 H 1.09002 * 109.47166 * 180.02562 * 11 10 7 37 37 H 1.09000 * 109.46849 * 299.99345 * 11 10 7 38 38 H 1.09005 * 109.48953 * 299.35644 * 12 10 7 39 39 H 1.09004 * 109.50715 * 179.30151 * 12 10 7 40 40 H 0.97004 * 120.00253 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9838 0.6374 -1.2868 6 6 3.6586 1.5522 -2.3899 7 6 4.2111 0.9845 -3.6995 8 1 3.9464 1.6472 -4.5234 9 6 5.7339 0.8713 -3.6047 10 7 3.6342 -0.3463 -3.9354 11 6 4.0826 -0.8938 -5.2228 12 6 3.9594 -1.2612 -2.8323 13 6 3.4069 -0.6935 -1.5227 14 1 2.3220 -0.6129 -1.5903 15 6 3.7730 -1.6094 -0.3832 16 1 4.3737 -1.2400 0.4348 17 6 3.3411 -2.9187 -0.3850 18 7 2.6100 -3.3686 -1.3814 19 14 3.7942 -4.0537 1.0277 20 1 2.7519 -3.9719 2.0823 21 1 3.8871 -5.4500 0.5307 22 1 5.1039 -3.6415 1.5933 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6886 1.8464 0.8901 27 1 1.6886 1.8464 -0.8899 28 1 3.8469 0.5200 0.8064 29 1 3.9778 2.1696 0.1506 30 1 4.1071 2.5269 -2.1982 31 1 2.5766 1.6587 -2.4676 32 1 5.9983 0.2080 -2.7811 33 1 6.1613 1.8584 -3.4277 34 1 6.1270 0.4675 -4.5376 35 1 5.1692 -0.9788 -5.2228 36 1 3.6406 -1.8789 -5.3724 37 1 3.7700 -0.2296 -6.0286 38 1 5.0415 -1.3673 -2.7548 39 1 3.5111 -2.2361 -3.0238 40 1 2.3058 -4.2897 -1.3826 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220559668.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:17 Heat of formation + Delta-G solvation = -35.261516 kcal Electronic energy + Delta-G solvation = -19719.119114 eV Core-core repulsion = 16955.057323 eV Total energy + Delta-G solvation = -2764.061791 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.66921 -38.57199 -36.23008 -34.82988 -32.21155 -30.97683 -28.82576 -27.63966 -26.83101 -26.30694 -24.58917 -23.26037 -21.96882 -19.29106 -18.25645 -17.35441 -17.27011 -16.61662 -16.38178 -15.82823 -15.63056 -15.41231 -15.05671 -14.78297 -14.29122 -13.78559 -13.70267 -13.17184 -13.01721 -12.83914 -12.79593 -12.71269 -12.51802 -12.31386 -12.27513 -12.00672 -11.82439 -11.73878 -11.55025 -11.15540 -10.61276 -10.43693 -10.14135 -8.99377 -8.57204 -7.91653 -5.95522 1.44218 1.45340 1.53772 2.53056 3.14742 3.27508 3.45438 3.59088 4.09983 4.29062 4.31959 4.36290 4.44934 4.52764 4.57172 4.59775 4.64788 4.65860 4.77976 4.82136 4.89701 4.94541 4.98815 5.00764 5.06399 5.12854 5.22914 5.37439 5.58339 5.70570 5.85690 6.01983 6.31552 6.41814 6.48782 6.60031 6.67673 6.97612 7.16997 7.68120 9.14727 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.018439 B = 0.011686 C = 0.008951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.120509 B = 2395.440043 C = 3127.459598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.374 6.374 3 C 0.027 3.973 4 C 0.064 3.936 5 N -0.541 5.541 6 C 0.061 3.939 7 C 0.081 3.919 8 H 0.093 0.907 9 C -0.164 4.164 10 N -0.558 5.558 11 C 0.030 3.970 12 C 0.078 3.922 13 C 0.230 3.770 14 H 0.017 0.983 15 C -0.480 4.480 16 H 0.046 0.954 17 C 0.018 3.982 18 N -0.918 5.918 19 Si 0.941 3.059 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.274 1.274 23 H 0.052 0.948 24 H 0.035 0.965 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.042 0.958 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.020 0.980 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.024 0.976 36 H 0.050 0.950 37 H 0.081 0.919 38 H -0.003 1.003 39 H 0.068 0.932 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.308 10.542 -2.264 10.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.292 6.292 3 C -0.051 4.051 4 C -0.065 4.065 5 N -0.265 5.265 6 C -0.068 4.068 7 C -0.028 4.028 8 H 0.111 0.889 9 C -0.222 4.222 10 N -0.282 5.282 11 C -0.118 4.118 12 C -0.050 4.050 13 C 0.123 3.877 14 H 0.034 0.966 15 C -0.519 4.519 16 H 0.064 0.936 17 C -0.179 4.179 18 N -0.560 5.560 19 Si 0.769 3.231 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.198 1.198 23 H 0.070 0.930 24 H 0.054 0.946 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.118 0.882 30 H 0.109 0.891 31 H 0.038 0.962 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.016 0.984 39 H 0.086 0.914 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.344 10.201 -2.330 10.469 hybrid contribution -0.191 -0.970 0.736 1.232 sum 0.153 9.232 -1.593 9.369 Atomic orbital electron populations 1.22673 0.82554 1.01782 0.99633 1.88523 1.18825 1.27165 1.94698 1.23290 0.96671 0.85394 0.99725 1.22201 0.90741 1.00167 0.93351 1.62331 1.59133 1.03670 1.01396 1.22176 0.97458 0.96164 0.90987 1.21808 0.93007 0.90745 0.97247 0.88900 1.22178 0.96779 1.02470 1.00822 1.62463 1.58975 1.03688 1.03087 1.22302 0.97827 1.00095 0.91616 1.22157 0.95482 0.96282 0.91088 1.19156 0.93300 0.84175 0.91099 0.96592 1.21160 1.30143 0.95237 1.05380 0.93584 1.25415 0.95603 0.99329 0.97579 1.70019 1.37991 1.15716 1.32227 0.85832 0.78308 0.78456 0.80546 1.20933 1.21562 1.19846 0.92978 0.94591 0.91566 0.92338 0.93964 0.91678 0.88203 0.89118 0.96209 0.93755 0.90960 0.93132 0.95741 0.93132 0.90069 0.98437 0.91421 0.93793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.08 11.01 113.37 1.25 2.33 16 2 O -0.37 -16.40 6.71 -148.98 -1.00 -17.40 16 3 C 0.03 0.97 5.73 71.98 0.41 1.38 16 4 C 0.06 2.36 5.59 86.30 0.48 2.84 16 5 N -0.54 -22.56 4.04 -874.86 -3.54 -26.09 16 6 C 0.06 2.11 4.67 86.31 0.40 2.52 16 7 C 0.08 2.75 2.97 44.92 0.13 2.89 16 8 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 9 C -0.16 -5.28 8.37 71.98 0.60 -4.68 16 10 N -0.56 -22.99 4.92 -896.55 -4.41 -27.39 16 11 C 0.03 1.03 9.28 127.69 1.19 2.21 16 12 C 0.08 3.90 4.28 86.31 0.37 4.27 16 13 C 0.23 11.59 1.32 44.18 0.06 11.65 16 14 H 0.02 0.95 5.53 -2.39 -0.01 0.94 16 15 C -0.48 -26.56 7.04 25.60 0.18 -26.38 16 16 H 0.05 2.58 6.45 -2.91 -0.02 2.57 16 17 C 0.02 1.02 5.30 84.65 0.45 1.47 16 18 N -0.92 -53.95 11.34 21.45 0.24 -53.71 16 19 Si 0.94 45.37 29.54 68.60 2.03 47.40 16 20 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 21 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 22 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 23 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 24 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 26 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 27 H 0.04 1.44 6.18 -2.39 -0.01 1.42 16 28 H 0.06 2.74 6.28 -2.39 -0.01 2.72 16 29 H 0.10 2.91 8.13 -2.39 -0.02 2.89 16 30 H 0.09 2.57 8.13 -2.39 -0.02 2.55 16 31 H 0.02 0.74 6.39 -2.38 -0.02 0.72 16 32 H 0.04 1.74 5.94 -2.38 -0.01 1.73 16 33 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.05 1.51 6.48 -2.39 -0.02 1.50 16 35 H 0.02 0.81 6.39 -2.39 -0.02 0.79 16 36 H 0.05 1.83 8.13 -2.39 -0.02 1.81 16 37 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.00 -0.13 6.34 -2.38 -0.02 -0.15 16 39 H 0.07 3.87 6.12 -2.38 -0.01 3.85 16 40 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -64.00 295.24 -0.15 -64.14 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 1.00 Total: 12.56 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 5.52 Total: 0.49 kcal Atomic # 7 Polarization: -99.49 SS G_CDS: -7.70 Total: -107.20 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -1.00 Total: -17.40 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -64.00 -0.15 -64.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220559668.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.881 kcal (2) G-P(sol) polarization free energy of solvation -63.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds