Wall clock time and date at job start Mon Mar 30 2020 04:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99816 * 2 1 4 4 C 1.53006 * 109.46723 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.47332 * 67.34263 * 4 3 2 6 6 C 1.46964 * 110.99768 * 286.50827 * 5 4 3 7 7 C 1.53050 * 109.36265 * 176.81382 * 6 5 4 8 8 H 1.09005 * 109.48563 * 298.43552 * 7 6 5 9 9 C 1.52995 * 109.50780 * 178.38301 * 7 6 5 10 10 N 1.46954 * 109.36404 * 58.39997 * 7 6 5 11 11 C 1.46903 * 110.99982 * 176.81060 * 10 7 6 12 12 C 1.46959 * 110.88598 * 300.67819 * 10 7 6 13 13 C 1.46960 * 110.99980 * 162.71160 * 5 4 3 14 14 H 1.09000 * 109.50454 * 63.20549 * 13 5 4 15 15 C 1.50700 * 109.48604 * 303.15632 * 13 5 4 16 16 H 1.07996 * 120.00202 * 0.10370 * 15 13 5 17 17 C 1.37882 * 119.99699 * 179.83722 * 15 13 5 18 18 N 1.31512 * 120.00085 * 0.26681 * 17 15 13 19 19 Si 1.86795 * 119.99743 * 180.27308 * 17 15 13 20 20 H 1.48500 * 109.47393 * 59.99659 * 19 17 15 21 21 H 1.48505 * 109.46884 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47543 * 299.99623 * 19 17 15 23 23 H 1.08996 * 109.47297 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47574 * 300.00750 * 1 2 3 25 25 H 1.09008 * 109.46936 * 60.00563 * 1 2 3 26 26 H 1.08995 * 109.47673 * 59.99456 * 3 2 1 27 27 H 1.09002 * 109.46917 * 299.98834 * 3 2 1 28 28 H 1.08999 * 109.46897 * 307.33748 * 4 3 2 29 29 H 1.08999 * 109.46517 * 187.34642 * 4 3 2 30 30 H 1.09000 * 109.48893 * 56.84572 * 6 5 4 31 31 H 1.08992 * 109.48932 * 296.78035 * 6 5 4 32 32 H 1.09008 * 109.46990 * 300.09438 * 9 7 6 33 33 H 1.08999 * 109.47178 * 60.09445 * 9 7 6 34 34 H 1.08994 * 109.47344 * 180.09940 * 9 7 6 35 35 H 1.08999 * 109.47252 * 187.74949 * 11 10 7 36 36 H 1.08998 * 109.47406 * 307.75671 * 11 10 7 37 37 H 1.09007 * 109.46778 * 67.75723 * 11 10 7 38 38 H 1.08998 * 109.48938 * 299.35975 * 12 10 7 39 39 H 1.09000 * 109.49233 * 179.28902 * 12 10 7 40 40 H 0.97001 * 120.00178 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9820 0.6138 -1.2771 6 6 3.6757 -0.8218 -1.3483 7 6 4.0833 -1.3601 -2.7219 8 1 3.5107 -0.8502 -3.4967 9 6 3.8030 -2.8628 -2.7854 10 7 5.5174 -1.1193 -2.9336 11 6 5.9640 -1.6902 -4.2113 12 6 5.8238 0.3162 -2.8624 13 6 5.4162 0.8545 -1.4888 14 1 5.9890 0.3450 -0.7139 15 6 5.6921 2.3347 -1.4268 16 1 4.8837 3.0276 -1.2463 17 6 6.9777 2.8039 -1.5949 18 7 7.9622 1.9602 -1.8147 19 14 7.3209 4.6382 -1.5104 20 1 6.9216 5.1556 -0.1770 21 1 8.7708 4.8806 -1.7211 22 1 6.5434 5.3365 -2.5654 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8898 25 1 -0.3633 0.5138 -0.8901 26 1 1.6885 1.8465 0.8899 27 1 1.6887 1.8463 -0.8901 28 1 3.8481 0.5347 0.8180 29 1 3.9780 2.1720 0.1321 30 1 2.6063 -0.9731 -1.2011 31 1 4.2284 -1.3505 -0.5719 32 1 4.3751 -3.3722 -2.0099 33 1 2.7392 -3.0409 -2.6283 34 1 4.0951 -3.2458 -3.7631 35 1 7.0496 -1.6203 -4.2809 36 1 5.6629 -2.7362 -4.2671 37 1 5.5110 -1.1373 -5.0344 38 1 5.2710 0.8450 -3.6388 39 1 6.8932 0.4676 -3.0096 40 1 8.8666 2.2903 -1.9334 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220559729.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:22 Heat of formation + Delta-G solvation = -27.248024 kcal Electronic energy + Delta-G solvation = -19040.107570 eV Core-core repulsion = 16276.393270 eV Total energy + Delta-G solvation = -2763.714300 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -38.73781 -37.39098 -34.84380 -33.01507 -31.02090 -29.75945 -27.19234 -26.68189 -25.58459 -24.06800 -22.80926 -21.26530 -20.14668 -18.59182 -16.57010 -16.19519 -15.60514 -14.96800 -14.79821 -14.67513 -14.07730 -14.00027 -13.50959 -13.17976 -12.83803 -12.53213 -11.99161 -11.71693 -11.66403 -11.43239 -11.28720 -11.06429 -10.95256 -10.84721 -10.71742 -10.54597 -10.20194 -10.02392 -9.96299 -9.60616 -9.05679 -8.84262 -8.46095 -7.39271 -7.05765 -6.02742 -4.08199 3.30652 3.35753 3.37885 4.14499 4.38963 4.85326 4.98413 5.30447 5.39614 5.47892 5.56275 5.71528 5.73418 5.78272 5.87195 5.89515 5.96351 6.07870 6.11204 6.20373 6.32377 6.40797 6.46538 6.55127 6.69283 6.76014 6.82401 6.94326 7.08662 7.43829 7.51248 7.63662 7.78131 8.01814 8.08445 8.22270 8.38531 8.67743 8.99792 9.56928 11.03664 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.017826 B = 0.009694 C = 0.006541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.376651 B = 2887.679333 C = 4279.383058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.066 3.934 4 C 0.062 3.938 5 N -0.536 5.536 6 C 0.061 3.939 7 C 0.083 3.917 8 H 0.035 0.965 9 C -0.143 4.143 10 N -0.545 5.545 11 C 0.026 3.974 12 C 0.070 3.930 13 C 0.222 3.778 14 H 0.008 0.992 15 C -0.510 4.510 16 H 0.064 0.936 17 C 0.062 3.938 18 N -0.888 5.888 19 Si 0.896 3.104 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.078 0.922 24 H 0.034 0.966 25 H 0.037 0.963 26 H 0.042 0.958 27 H 0.054 0.946 28 H 0.027 0.973 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.023 0.977 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.013 0.987 38 H 0.013 0.987 39 H 0.106 0.894 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.964 -4.836 0.291 11.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.304 6.304 3 C -0.011 4.011 4 C -0.066 4.066 5 N -0.261 5.261 6 C -0.067 4.067 7 C -0.026 4.026 8 H 0.053 0.947 9 C -0.201 4.201 10 N -0.270 5.270 11 C -0.123 4.123 12 C -0.057 4.057 13 C 0.115 3.885 14 H 0.025 0.975 15 C -0.549 4.549 16 H 0.082 0.918 17 C -0.140 4.140 18 N -0.527 5.527 19 Si 0.724 3.276 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.096 0.904 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.121 0.879 30 H 0.107 0.893 31 H 0.041 0.959 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.032 0.968 38 H 0.032 0.968 39 H 0.124 0.876 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.630 -4.994 0.261 10.851 hybrid contribution 0.079 1.232 -0.072 1.237 sum -9.550 -3.762 0.188 10.266 Atomic orbital electron populations 1.22658 0.82636 1.01931 0.99426 1.87950 1.18441 1.28963 1.95053 1.22781 0.95007 0.83912 0.99358 1.22077 0.91241 1.01975 0.91324 1.62183 1.20972 1.12027 1.30889 1.22337 1.00816 0.88986 0.94583 1.21609 0.89137 0.94454 0.97417 0.94750 1.21865 1.00609 0.96105 1.01481 1.62351 1.15022 1.18177 1.31460 1.22338 1.00586 0.98814 0.90526 1.22443 1.03028 0.82075 0.98165 1.19241 0.81317 0.95301 0.92647 0.97468 1.21104 0.93202 0.91371 1.49249 0.91803 1.24963 0.96161 0.97844 0.95074 1.69877 1.00240 1.33839 1.48701 0.86592 0.77081 0.85349 0.78561 1.20291 1.21313 1.20270 0.90362 0.94775 0.94446 0.94019 0.92740 0.95433 0.87858 0.89274 0.95873 0.92281 0.92873 0.92957 0.92006 0.92296 0.96837 0.96819 0.87581 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.38 -6.23 7.73 -35.23 -0.27 -6.50 16 3 C 0.07 1.09 6.23 37.16 0.23 1.32 16 4 C 0.06 1.25 5.33 -3.82 -0.02 1.23 16 5 N -0.54 -12.05 4.46 -227.87 -1.02 -13.07 16 6 C 0.06 1.25 4.56 -3.76 -0.02 1.24 16 7 C 0.08 1.62 2.56 -67.66 -0.17 1.45 16 8 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 9 C -0.14 -2.23 8.88 37.16 0.33 -1.90 16 10 N -0.54 -11.80 4.78 -234.73 -1.12 -12.92 16 11 C 0.03 0.48 9.36 60.07 0.56 1.04 16 12 C 0.07 1.75 4.66 -3.77 -0.02 1.74 16 13 C 0.22 5.72 1.94 -68.81 -0.13 5.59 16 14 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 15 C -0.51 -13.79 7.69 -34.44 -0.26 -14.06 16 16 H 0.06 1.70 6.61 -52.49 -0.35 1.35 16 17 C 0.06 1.68 5.31 -17.82 -0.09 1.58 16 18 N -0.89 -25.11 11.35 55.43 0.63 -24.48 16 19 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.04 0.42 8.14 -51.92 -0.42 0.00 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.03 0.56 8.03 -51.93 -0.42 0.15 16 29 H 0.10 2.18 5.87 -51.93 -0.30 1.88 16 30 H 0.09 1.71 5.26 -51.93 -0.27 1.44 16 31 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.94 8.14 -51.92 -0.42 0.51 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.75 6.19 -51.93 -0.32 0.42 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 0.93 5.83 -51.93 -0.30 0.62 16 37 H 0.01 0.24 8.14 -51.92 -0.42 -0.18 16 38 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.11 2.91 6.13 -51.93 -0.32 2.60 16 40 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 304.79 15.07 4.59 4.59 Total: -1.00 -28.84 304.79 -7.61 -36.45 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -6.92 Total: -0.73 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: 1.52 Total: 0.70 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: -1.51 Total: -50.47 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.27 Total: -6.50 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.84 -7.61 -36.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220559729.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.203 kcal (2) G-P(sol) polarization free energy of solvation -28.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds