Wall clock time and date at job start Mon Mar 30 2020 04:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 113.99816 * 2 1 4 4 C 1.53006 * 109.46723 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.47332 * 67.34263 * 4 3 2 6 6 C 1.46964 * 110.99768 * 286.50827 * 5 4 3 7 7 C 1.53050 * 109.36265 * 176.81382 * 6 5 4 8 8 H 1.09005 * 109.48563 * 298.43552 * 7 6 5 9 9 C 1.52995 * 109.50780 * 178.38301 * 7 6 5 10 10 N 1.46954 * 109.36404 * 58.39997 * 7 6 5 11 11 C 1.46903 * 110.99982 * 176.81060 * 10 7 6 12 12 C 1.46959 * 110.88598 * 300.67819 * 10 7 6 13 13 C 1.46960 * 110.99980 * 162.71160 * 5 4 3 14 14 H 1.09000 * 109.50454 * 63.20549 * 13 5 4 15 15 C 1.50700 * 109.48604 * 303.15632 * 13 5 4 16 16 H 1.07996 * 120.00202 * 0.10370 * 15 13 5 17 17 C 1.37882 * 119.99699 * 179.83722 * 15 13 5 18 18 N 1.31512 * 120.00085 * 0.26681 * 17 15 13 19 19 Si 1.86795 * 119.99743 * 180.27308 * 17 15 13 20 20 H 1.48500 * 109.47393 * 59.99659 * 19 17 15 21 21 H 1.48505 * 109.46884 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47543 * 299.99623 * 19 17 15 23 23 H 1.08996 * 109.47297 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47574 * 300.00750 * 1 2 3 25 25 H 1.09008 * 109.46936 * 60.00563 * 1 2 3 26 26 H 1.08995 * 109.47673 * 59.99456 * 3 2 1 27 27 H 1.09002 * 109.46917 * 299.98834 * 3 2 1 28 28 H 1.08999 * 109.46897 * 307.33748 * 4 3 2 29 29 H 1.08999 * 109.46517 * 187.34642 * 4 3 2 30 30 H 1.09000 * 109.48893 * 56.84572 * 6 5 4 31 31 H 1.08992 * 109.48932 * 296.78035 * 6 5 4 32 32 H 1.09008 * 109.46990 * 300.09438 * 9 7 6 33 33 H 1.08999 * 109.47178 * 60.09445 * 9 7 6 34 34 H 1.08994 * 109.47344 * 180.09940 * 9 7 6 35 35 H 1.08999 * 109.47252 * 187.74949 * 11 10 7 36 36 H 1.08998 * 109.47406 * 307.75671 * 11 10 7 37 37 H 1.09007 * 109.46778 * 67.75723 * 11 10 7 38 38 H 1.08998 * 109.48938 * 299.35975 * 12 10 7 39 39 H 1.09000 * 109.49233 * 179.28902 * 12 10 7 40 40 H 0.97001 * 120.00178 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9820 0.6138 -1.2771 6 6 3.6757 -0.8218 -1.3483 7 6 4.0833 -1.3601 -2.7219 8 1 3.5107 -0.8502 -3.4967 9 6 3.8030 -2.8628 -2.7854 10 7 5.5174 -1.1193 -2.9336 11 6 5.9640 -1.6902 -4.2113 12 6 5.8238 0.3162 -2.8624 13 6 5.4162 0.8545 -1.4888 14 1 5.9890 0.3450 -0.7139 15 6 5.6921 2.3347 -1.4268 16 1 4.8837 3.0276 -1.2463 17 6 6.9777 2.8039 -1.5949 18 7 7.9622 1.9602 -1.8147 19 14 7.3209 4.6382 -1.5104 20 1 6.9216 5.1556 -0.1770 21 1 8.7708 4.8806 -1.7211 22 1 6.5434 5.3365 -2.5654 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8898 25 1 -0.3633 0.5138 -0.8901 26 1 1.6885 1.8465 0.8899 27 1 1.6887 1.8463 -0.8901 28 1 3.8481 0.5347 0.8180 29 1 3.9780 2.1720 0.1321 30 1 2.6063 -0.9731 -1.2011 31 1 4.2284 -1.3505 -0.5719 32 1 4.3751 -3.3722 -2.0099 33 1 2.7392 -3.0409 -2.6283 34 1 4.0951 -3.2458 -3.7631 35 1 7.0496 -1.6203 -4.2809 36 1 5.6629 -2.7362 -4.2671 37 1 5.5110 -1.1373 -5.0344 38 1 5.2710 0.8450 -3.6388 39 1 6.8932 0.4676 -3.0096 40 1 8.8666 2.2903 -1.9334 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220559729.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:40:21 Heat of formation + Delta-G solvation = -48.445898 kcal Electronic energy + Delta-G solvation = -19041.026779 eV Core-core repulsion = 16276.393270 eV Total energy + Delta-G solvation = -2764.633508 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.42557 -38.69417 -36.51993 -34.97262 -32.73417 -31.32424 -28.94105 -28.07896 -26.85554 -25.89640 -24.43106 -22.95781 -21.83469 -20.37077 -18.54263 -17.53158 -17.10694 -16.60063 -16.39841 -16.08065 -15.72973 -15.61554 -15.32896 -14.75431 -14.41353 -14.06430 -13.65640 -13.29192 -13.01068 -12.96461 -12.76538 -12.67738 -12.54964 -12.48395 -12.28441 -12.08217 -12.05175 -11.85142 -11.73640 -11.18820 -10.82140 -10.53194 -10.36344 -9.13096 -8.91969 -8.11686 -6.25141 1.43201 1.45030 1.52720 2.41755 2.94913 3.11316 3.25808 3.38126 4.07463 4.21462 4.33291 4.35796 4.38734 4.46341 4.56173 4.60836 4.63412 4.67638 4.78474 4.81939 4.89181 4.90033 4.94493 4.98625 5.00824 5.08673 5.19102 5.25196 5.36200 5.50611 5.62947 5.70061 6.12782 6.25989 6.34466 6.36569 6.54606 6.76877 6.90728 7.44274 8.94174 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.017826 B = 0.009694 C = 0.006541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.376651 B = 2887.679333 C = 4279.383058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.408 6.408 3 C 0.079 3.921 4 C 0.060 3.940 5 N -0.540 5.540 6 C 0.065 3.935 7 C 0.080 3.920 8 H 0.027 0.973 9 C -0.132 4.132 10 N -0.560 5.560 11 C 0.027 3.973 12 C 0.086 3.914 13 C 0.229 3.771 14 H -0.041 1.041 15 C -0.526 4.526 16 H 0.065 0.935 17 C 0.014 3.986 18 N -0.917 5.917 19 Si 0.963 3.037 20 H -0.269 1.269 21 H -0.285 1.285 22 H -0.271 1.271 23 H 0.096 0.904 24 H 0.050 0.950 25 H 0.043 0.957 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.017 0.983 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.004 0.996 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.091 0.909 37 H 0.016 0.984 38 H -0.004 1.004 39 H 0.077 0.923 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.860 -5.104 0.069 12.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.327 6.327 3 C 0.003 3.997 4 C -0.068 4.068 5 N -0.265 5.265 6 C -0.063 4.063 7 C -0.028 4.028 8 H 0.045 0.955 9 C -0.190 4.190 10 N -0.285 5.285 11 C -0.121 4.121 12 C -0.042 4.042 13 C 0.121 3.879 14 H -0.023 1.023 15 C -0.564 4.564 16 H 0.083 0.917 17 C -0.186 4.186 18 N -0.556 5.556 19 Si 0.788 3.212 20 H -0.194 1.194 21 H -0.210 1.210 22 H -0.197 1.197 23 H 0.115 0.885 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.035 0.965 29 H 0.105 0.895 30 H 0.126 0.874 31 H 0.022 0.978 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.035 0.965 38 H 0.014 0.986 39 H 0.095 0.905 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.556 -5.278 0.041 12.704 hybrid contribution 0.611 1.248 0.028 1.390 sum -10.945 -4.030 0.068 11.663 Atomic orbital electron populations 1.22890 0.80050 1.03579 1.00547 1.87863 1.21125 1.28487 1.95259 1.22528 0.92062 0.84560 1.00586 1.22100 0.94235 1.00564 0.89930 1.62229 1.18450 1.13577 1.32237 1.22405 1.01575 0.87498 0.94784 1.21743 0.87492 0.97285 0.96308 0.95463 1.21798 1.02220 0.92549 1.02438 1.62297 1.16845 1.15743 1.33651 1.22402 1.00324 1.00420 0.88925 1.22031 1.00783 0.84395 0.97007 1.18995 0.82857 0.94442 0.91560 1.02305 1.21372 0.93578 0.92117 1.49362 0.91706 1.25776 0.95891 1.02326 0.94577 1.70029 1.00506 1.35784 1.49305 0.85539 0.76892 0.79870 0.78898 1.19366 1.21029 1.19650 0.88538 0.93133 0.93797 0.91290 0.92897 0.96514 0.89466 0.87373 0.97806 0.92628 0.90446 0.91137 0.92545 0.89040 0.96523 0.98579 0.90503 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 113.37 1.25 1.77 16 2 O -0.41 -12.32 7.73 -148.98 -1.15 -13.47 16 3 C 0.08 2.50 6.23 71.98 0.45 2.95 16 4 C 0.06 2.45 5.33 86.31 0.46 2.91 16 5 N -0.54 -24.79 4.46 -874.86 -3.91 -28.70 16 6 C 0.07 2.67 4.56 86.31 0.39 3.06 16 7 C 0.08 3.06 2.56 44.92 0.12 3.18 16 8 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 9 C -0.13 -3.76 8.88 71.98 0.64 -3.12 16 10 N -0.56 -24.45 4.78 -896.54 -4.29 -28.74 16 11 C 0.03 0.97 9.36 127.69 1.20 2.16 16 12 C 0.09 4.48 4.66 86.31 0.40 4.88 16 13 C 0.23 12.34 1.94 44.17 0.09 12.43 16 14 H -0.04 -2.52 8.14 -2.39 -0.02 -2.54 16 15 C -0.53 -29.30 7.69 25.60 0.20 -29.10 16 16 H 0.06 3.52 6.61 -2.91 -0.02 3.50 16 17 C 0.01 0.76 5.31 84.66 0.45 1.21 16 18 N -0.92 -53.62 11.35 21.45 0.24 -53.37 16 19 Si 0.96 43.57 29.54 68.60 2.03 45.59 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 23 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 26 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.02 0.70 8.03 -2.39 -0.02 0.68 16 29 H 0.09 3.79 5.87 -2.39 -0.01 3.77 16 30 H 0.11 4.00 5.26 -2.39 -0.01 3.99 16 31 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.07 1.75 6.19 -2.39 -0.01 1.74 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.09 2.64 5.83 -2.39 -0.01 2.63 16 37 H 0.02 0.57 8.14 -2.38 -0.02 0.55 16 38 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 39 H 0.08 4.43 6.13 -2.39 -0.01 4.42 16 40 H 0.26 14.60 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -64.35 304.79 -0.45 -64.80 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.99 Total: 11.57 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 5.63 Total: 2.32 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -7.95 Total: -110.81 kcal Atomic # 8 Polarization: -12.32 SS G_CDS: -1.15 Total: -13.47 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -64.35 -0.45 -64.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220559729.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.351 kcal (2) G-P(sol) polarization free energy of solvation -64.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds