Wall clock time and date at job start Mon Mar 30 2020 04:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 114.00107 * 2 1 4 4 C 1.53006 * 109.47427 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.46983 * 64.99637 * 4 3 2 6 6 C 1.48197 * 111.00358 * 298.25559 * 5 4 3 7 7 C 1.53927 * 112.77513 * 191.67935 * 6 5 4 8 8 H 1.09000 * 108.78757 * 79.11270 * 7 6 5 9 9 C 1.50699 * 108.86687 * 197.58850 * 7 6 5 10 10 H 1.07994 * 120.00149 * 3.02372 * 9 7 6 11 11 C 1.37883 * 119.99857 * 183.02448 * 9 7 6 12 12 N 1.31515 * 120.00017 * 359.97438 * 11 9 7 13 13 Si 1.86801 * 119.99970 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47466 * 59.99344 * 13 11 9 15 15 H 1.48502 * 109.47181 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.46902 * 299.99521 * 13 11 9 17 17 N 1.44256 * 112.54605 * 318.37810 * 7 6 5 18 18 C 1.48104 * 109.97540 * 93.90803 * 17 7 6 19 19 C 1.46131 * 112.19799 * 279.70071 * 18 17 7 20 20 C 1.44251 * 110.99974 * 170.00250 * 5 4 3 21 21 H 1.09002 * 109.60609 * 100.09992 * 20 5 4 22 22 C 1.53007 * 109.60450 * 339.60137 * 20 5 4 23 23 H 1.09001 * 109.46833 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46682 * 300.00243 * 1 2 3 25 25 H 1.09005 * 109.47038 * 59.99875 * 1 2 3 26 26 H 1.08996 * 109.47166 * 60.00094 * 3 2 1 27 27 H 1.09000 * 109.47112 * 299.99705 * 3 2 1 28 28 H 1.09004 * 109.46384 * 305.00142 * 4 3 2 29 29 H 1.08990 * 109.47152 * 185.00229 * 4 3 2 30 30 H 1.08995 * 108.82399 * 70.82434 * 6 5 4 31 31 H 1.09005 * 108.73346 * 312.46501 * 6 5 4 32 32 H 0.97000 * 119.99862 * 180.02562 * 12 11 9 33 33 H 1.00902 * 111.00178 * 330.68190 * 17 7 6 34 34 H 1.09003 * 108.93302 * 158.99979 * 18 17 7 35 35 H 1.09000 * 108.86171 * 40.35754 * 18 17 7 36 36 H 1.08997 * 108.99789 * 300.24348 * 19 18 17 37 37 H 1.08997 * 108.99516 * 181.48410 * 19 18 17 38 38 H 1.08997 * 109.47023 * 300.83528 * 22 20 5 39 39 H 1.08999 * 109.47162 * 60.83672 * 22 20 5 40 40 H 1.09002 * 109.46993 * 180.83712 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1847 -0.0006 5 7 3.9769 0.5627 -1.2561 6 6 3.4266 -0.8065 -1.3928 7 6 4.0819 -1.6006 -2.5371 8 1 5.0472 -1.9752 -2.1966 9 6 3.2001 -2.7724 -2.8843 10 1 2.2534 -2.9034 -2.3816 11 6 3.6022 -3.6771 -3.8440 12 7 4.7549 -3.5173 -4.4566 13 14 2.5089 -5.1292 -4.2750 14 1 1.2014 -4.6334 -4.7747 15 1 3.1640 -5.9468 -5.3274 16 1 2.2926 -5.9623 -3.0648 17 7 4.2828 -0.8011 -3.7209 18 6 5.6477 -0.2260 -3.7173 19 6 5.7449 0.9597 -2.8687 20 6 5.4104 0.6425 -1.3966 21 1 5.8590 -0.3107 -1.1167 22 6 5.9534 1.7537 -0.4957 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6887 1.8463 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.8515 0.5682 0.8410 29 1 3.9786 2.1764 0.0890 30 1 2.3552 -0.7378 -1.5808 31 1 3.5852 -1.3426 -0.4570 32 1 5.0375 -4.1536 -5.1320 33 1 3.5850 -0.0756 -3.7900 34 1 5.9196 0.0457 -4.7373 35 1 6.3466 -0.9794 -3.3540 36 1 5.0511 1.7162 -3.2351 37 1 6.7595 1.3539 -2.9249 38 1 5.4965 2.7032 -0.7744 39 1 5.7158 1.5273 0.5437 40 1 7.0347 1.8220 -0.6147 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220561825.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:36 Heat of formation + Delta-G solvation = -44.208460 kcal Electronic energy + Delta-G solvation = -19205.246413 eV Core-core repulsion = 16440.796654 eV Total energy + Delta-G solvation = -2764.449759 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.66855 -38.62046 -36.48829 -34.82297 -33.32987 -31.05539 -29.41323 -28.09230 -27.05665 -25.67883 -24.36253 -22.51557 -21.94127 -20.09528 -18.52172 -17.70086 -17.27617 -16.64543 -16.40695 -16.07776 -15.66548 -15.58008 -15.16134 -14.53044 -14.27548 -14.07618 -13.78357 -13.48689 -12.97081 -12.82931 -12.77093 -12.64796 -12.57071 -12.42073 -12.21251 -12.00411 -11.92014 -11.63467 -11.50747 -11.17337 -10.84547 -10.47152 -10.30392 -8.99452 -8.50108 -7.87602 -6.08174 1.44075 1.46312 1.52965 2.50649 3.00315 3.04028 3.32655 3.89372 4.09175 4.13294 4.18770 4.33752 4.39361 4.42844 4.55035 4.57498 4.62647 4.66522 4.71608 4.76471 4.81886 4.89997 4.96926 4.98379 5.07270 5.17765 5.23479 5.26127 5.32162 5.45480 5.65640 5.86849 6.15350 6.34925 6.42379 6.54469 6.81288 7.12249 7.40652 7.63180 9.14074 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.019497 B = 0.009461 C = 0.006727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.805019 B = 2958.832291 C = 4161.070300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.412 6.412 3 C 0.062 3.938 4 C 0.054 3.946 5 N -0.549 5.549 6 C 0.070 3.930 7 C 0.226 3.774 8 H -0.021 1.021 9 C -0.539 4.539 10 H 0.043 0.957 11 C 0.034 3.966 12 N -0.887 5.887 13 Si 0.947 3.053 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.275 1.275 17 N -0.644 5.644 18 C 0.068 3.932 19 C -0.126 4.126 20 C 0.085 3.915 21 H 0.008 0.992 22 C -0.144 4.144 23 H 0.079 0.921 24 H 0.058 0.942 25 H 0.043 0.957 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.023 0.977 29 H 0.122 0.878 30 H 0.079 0.921 31 H -0.006 1.006 32 H 0.252 0.748 33 H 0.318 0.682 34 H 0.051 0.949 35 H 0.024 0.976 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.584 13.143 8.814 16.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.331 6.331 3 C -0.015 4.015 4 C -0.073 4.073 5 N -0.274 5.274 6 C -0.058 4.058 7 C 0.116 3.884 8 H -0.003 1.003 9 C -0.578 4.578 10 H 0.062 0.938 11 C -0.168 4.168 12 N -0.524 5.524 13 Si 0.773 3.227 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.201 1.201 17 N -0.272 5.272 18 C -0.062 4.062 19 C -0.165 4.165 20 C -0.024 4.024 21 H 0.026 0.974 22 C -0.201 4.201 23 H 0.097 0.903 24 H 0.076 0.924 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.041 0.959 29 H 0.140 0.860 30 H 0.097 0.903 31 H 0.013 0.987 32 H 0.061 0.939 33 H 0.135 0.865 34 H 0.069 0.931 35 H 0.043 0.957 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.344 12.599 7.906 15.058 hybrid contribution -0.305 -0.942 0.905 1.342 sum -2.649 11.658 8.811 14.851 Atomic orbital electron populations 1.22799 0.80573 1.02864 1.00609 1.88098 1.20768 1.29060 1.95214 1.22711 0.93180 0.84568 1.01016 1.22517 0.94176 1.00840 0.89779 1.60765 1.10958 1.20444 1.35228 1.23075 1.00212 0.86055 0.96481 1.18734 0.93099 0.90762 0.85774 1.00332 1.21327 1.05141 1.09001 1.22358 0.93832 1.25618 0.95992 0.99566 0.95670 1.70188 1.21364 1.35838 1.24972 0.85830 0.79433 0.79801 0.77620 1.19830 1.21177 1.20093 1.61058 1.01478 1.23365 1.41263 1.20737 0.92571 0.94657 0.98238 1.21263 1.01904 0.98786 0.94578 1.21359 0.87472 0.97269 0.96316 0.97357 1.22104 1.01552 0.98001 0.98464 0.90284 0.92393 0.93814 0.90715 0.92658 0.95865 0.86004 0.90256 0.98743 0.93936 0.86539 0.93094 0.95746 0.91075 0.90475 0.90088 0.91957 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.01 113.37 1.25 1.93 16 2 O -0.41 -13.30 7.31 -148.98 -1.09 -14.39 16 3 C 0.06 1.59 6.13 71.98 0.44 2.03 16 4 C 0.05 1.49 4.31 86.31 0.37 1.86 16 5 N -0.55 -19.36 4.04 -869.48 -3.51 -22.87 16 6 C 0.07 3.17 3.55 86.37 0.31 3.48 16 7 C 0.23 12.06 1.79 44.98 0.08 12.14 16 8 H -0.02 -1.29 6.53 -2.39 -0.02 -1.31 16 9 C -0.54 -31.65 8.63 25.60 0.22 -31.43 16 10 H 0.04 2.54 7.67 -2.91 -0.02 2.52 16 11 C 0.03 1.98 5.38 84.66 0.46 2.44 16 12 N -0.89 -54.26 12.74 21.45 0.27 -53.99 16 13 Si 0.95 46.02 29.54 68.60 2.03 48.04 16 14 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 15 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 16 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 17 N -0.64 -32.28 5.68 -508.01 -2.89 -35.17 16 18 C 0.07 2.94 5.95 83.96 0.50 3.44 16 19 C -0.13 -4.21 4.90 28.91 0.14 -4.07 16 20 C 0.08 2.85 2.55 45.84 0.12 2.96 16 21 H 0.01 0.34 6.96 -2.39 -0.02 0.33 16 22 C -0.14 -3.33 7.71 71.98 0.56 -2.77 16 23 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 24 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.02 0.69 7.82 -2.38 -0.02 0.68 16 29 H 0.12 2.54 5.55 -2.39 -0.01 2.53 16 30 H 0.08 3.73 5.70 -2.39 -0.01 3.71 16 31 H -0.01 -0.28 7.97 -2.38 -0.02 -0.30 16 32 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 33 H 0.32 15.14 8.18 -89.69 -0.73 14.41 16 34 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.02 1.19 7.37 -2.39 -0.02 1.17 16 36 H 0.07 2.28 8.12 -2.39 -0.02 2.26 16 37 H 0.08 2.18 8.00 -2.39 -0.02 2.17 16 38 H 0.08 1.58 7.30 -2.39 -0.02 1.56 16 39 H 0.06 1.35 6.64 -2.39 -0.02 1.33 16 40 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -67.85 301.67 -0.48 -68.33 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.27 Total: 18.02 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: 4.44 Total: -7.98 kcal Atomic # 7 Polarization: -105.90 SS G_CDS: -6.12 Total: -112.02 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -1.09 Total: -14.39 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Total: -67.85 -0.48 -68.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220561825.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.124 kcal (2) G-P(sol) polarization free energy of solvation -67.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds