Wall clock time and date at job start Mon Mar 30 2020 04:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 114.00038 * 2 1 4 4 C 1.53001 * 109.47029 * 180.02562 * 3 2 1 5 5 N 1.46893 * 109.47461 * 63.02701 * 4 3 2 6 6 C 1.40208 * 110.95338 * 63.37637 * 5 4 3 7 7 C 1.54213 * 111.96744 * 187.99774 * 6 5 4 8 8 H 1.09010 * 109.56834 * 41.19080 * 7 6 5 9 9 C 1.50697 * 109.57297 * 161.43894 * 7 6 5 10 10 H 1.07997 * 119.99861 * 359.75229 * 9 7 6 11 11 C 1.37876 * 119.99742 * 179.75065 * 9 7 6 12 12 N 1.31517 * 120.00239 * 359.97438 * 11 9 7 13 13 Si 1.86799 * 119.99975 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47175 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47126 * 119.99920 * 13 11 9 16 16 H 1.48498 * 109.47149 * 239.99927 * 13 11 9 17 17 N 1.44572 * 108.95948 * 281.31777 * 7 6 5 18 18 C 1.48065 * 113.85850 * 94.28502 * 17 7 6 19 19 C 1.53695 * 112.47461 * 318.31682 * 18 17 7 20 20 C 1.47909 * 110.99797 * 191.45190 * 5 4 3 21 21 H 1.09000 * 109.63404 * 273.47307 * 20 5 4 22 22 C 1.53001 * 109.63493 * 34.07180 * 20 5 4 23 23 H 1.08994 * 109.46756 * 300.00121 * 1 2 3 24 24 H 1.08996 * 109.47082 * 59.99865 * 1 2 3 25 25 H 1.09003 * 109.46658 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47207 * 59.99711 * 3 2 1 27 27 H 1.09004 * 109.47028 * 299.99977 * 3 2 1 28 28 H 1.09000 * 109.46748 * 303.02319 * 4 3 2 29 29 H 1.09002 * 109.46947 * 183.03184 * 4 3 2 30 30 H 1.08994 * 108.86950 * 67.46834 * 6 5 4 31 31 H 1.08999 * 109.16580 * 308.73197 * 6 5 4 32 32 H 0.97001 * 119.99937 * 179.97438 * 12 11 9 33 33 H 1.00897 * 110.99920 * 328.16511 * 17 7 6 34 34 H 1.08996 * 108.88469 * 79.09225 * 18 17 7 35 35 H 1.08998 * 108.88356 * 197.64507 * 18 17 7 36 36 H 1.08999 * 108.95396 * 79.22696 * 19 18 17 37 37 H 1.08998 * 108.96076 * 197.88501 * 19 18 17 38 38 H 1.09001 * 109.46731 * 179.00229 * 22 20 5 39 39 H 1.08993 * 109.46829 * 299.00190 * 22 20 5 40 40 H 1.08992 * 109.46939 * 59.00437 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9736 0.5200 -1.2352 6 6 3.6468 1.2884 -2.3615 7 6 3.9154 0.5284 -3.6761 8 1 3.5980 -0.5090 -3.5695 9 6 3.1498 1.1776 -4.8001 10 1 2.5304 2.0403 -4.6039 11 6 3.2401 0.6702 -6.0789 12 7 3.9947 -0.3801 -6.3179 13 14 2.2916 1.4753 -7.4723 14 1 1.5245 2.6324 -6.9452 15 1 3.2425 1.9447 -8.5119 16 1 1.3544 0.4893 -8.0677 17 7 5.3313 0.5745 -3.9645 18 6 6.0817 -0.6027 -3.4711 19 6 5.6341 -1.0384 -2.0668 20 6 5.4007 0.1397 -1.1547 21 1 6.0214 0.9774 -1.4725 22 6 5.7494 -0.2470 0.2840 23 1 -0.3632 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 3.8538 0.5974 0.8608 29 1 3.9788 2.1789 0.0537 30 1 4.2437 2.2003 -2.3514 31 1 2.5914 1.5573 -2.3172 32 1 4.0579 -0.7372 -7.2176 33 1 5.7414 1.4323 -3.6266 34 1 5.9314 -1.4319 -4.1623 35 1 7.1432 -0.3572 -3.4410 36 1 4.7094 -1.6094 -2.1512 37 1 6.4036 -1.6760 -1.6317 38 1 6.7969 -0.5436 0.3367 39 1 5.5798 0.6062 0.9407 40 1 5.1199 -1.0790 0.5993 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220561885.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:39 Heat of formation + Delta-G solvation = -22.410603 kcal Electronic energy + Delta-G solvation = -19067.168439 eV Core-core repulsion = 16303.663906 eV Total energy + Delta-G solvation = -2763.504533 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.32032 -37.32008 -34.63374 -33.23460 -31.59673 -29.58202 -27.91914 -26.55384 -25.72139 -24.09462 -22.80765 -21.43515 -19.58747 -19.02313 -16.61718 -16.19830 -15.90625 -15.18357 -14.95602 -14.39359 -14.24940 -14.11611 -13.92480 -13.12017 -12.61573 -12.59309 -12.14756 -11.98656 -11.92823 -11.38768 -11.25471 -11.10090 -10.86339 -10.79139 -10.68333 -10.64991 -10.25398 -10.09459 -9.64962 -9.42677 -9.29387 -8.90181 -8.25126 -7.50127 -6.60283 -5.74467 -3.85467 3.39763 3.47635 3.50217 4.06699 4.36822 4.60517 5.24693 5.26430 5.33878 5.41883 5.45979 5.53773 5.56302 5.60899 5.72698 5.78384 5.88290 5.89869 5.96409 6.03655 6.11452 6.17654 6.23552 6.31256 6.40887 6.49705 6.70871 6.93233 7.07426 7.11601 7.43064 7.53402 7.78262 8.01239 8.13609 8.48226 8.85709 8.99934 9.35138 9.81287 11.30976 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.019772 B = 0.008742 C = 0.006625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.829893 B = 3202.203140 C = 4225.086251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.063 3.937 4 C 0.053 3.947 5 N -0.533 5.533 6 C 0.040 3.960 7 C 0.238 3.762 8 H 0.044 0.956 9 C -0.521 4.521 10 H 0.049 0.951 11 C 0.084 3.916 12 N -0.854 5.854 13 Si 0.881 3.119 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.287 1.287 17 N -0.657 5.657 18 C 0.071 3.929 19 C -0.146 4.146 20 C 0.095 3.905 21 H 0.036 0.964 22 C -0.149 4.149 23 H 0.031 0.969 24 H 0.041 0.959 25 H 0.082 0.918 26 H 0.042 0.958 27 H 0.054 0.946 28 H 0.084 0.916 29 H 0.037 0.963 30 H 0.000 1.000 31 H 0.068 0.932 32 H 0.252 0.748 33 H 0.304 0.696 34 H 0.067 0.933 35 H 0.038 0.962 36 H 0.074 0.926 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.051 0.949 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.263 1.434 13.166 13.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C -0.014 4.014 4 C -0.075 4.075 5 N -0.257 5.257 6 C -0.090 4.090 7 C 0.129 3.871 8 H 0.062 0.938 9 C -0.560 4.560 10 H 0.067 0.933 11 C -0.121 4.121 12 N -0.490 5.490 13 Si 0.709 3.291 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.213 1.213 17 N -0.285 5.285 18 C -0.059 4.059 19 C -0.186 4.186 20 C -0.013 4.013 21 H 0.054 0.946 22 C -0.206 4.206 23 H 0.050 0.950 24 H 0.059 0.941 25 H 0.100 0.900 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.102 0.898 29 H 0.055 0.945 30 H 0.018 0.982 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.414 0.449 12.348 12.363 hybrid contribution -0.286 1.685 0.149 1.716 sum -0.700 2.134 12.498 12.698 Atomic orbital electron populations 1.22693 0.82127 1.02373 0.99352 1.88009 1.18513 1.27137 1.95159 1.22648 0.94018 0.85247 0.99497 1.22234 0.93196 0.97096 0.94983 1.59312 1.17238 1.47328 1.01857 1.22100 1.00057 0.94074 0.92804 1.18906 0.84591 0.96275 0.87290 0.93830 1.20985 1.27114 1.14775 0.93173 0.93288 1.24865 0.94455 0.94633 0.98148 1.70059 1.37009 1.22120 1.19849 0.86757 0.79843 0.79443 0.83033 1.20108 1.21239 1.21324 1.59843 1.04105 1.00974 1.63556 1.22220 0.95448 0.96146 0.92062 1.22118 1.01907 0.97420 0.97139 1.21248 0.87609 0.97433 0.94980 0.94593 1.22065 1.00965 1.01488 0.96100 0.95018 0.94082 0.89975 0.93980 0.92816 0.89750 0.94493 0.98233 0.91421 0.93781 0.87908 0.91493 0.94376 0.90761 0.93025 0.92613 0.92959 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.17 10.62 -35.23 -0.37 -6.55 16 3 C 0.06 0.94 5.88 37.16 0.22 1.16 16 4 C 0.05 0.81 4.55 -3.83 -0.02 0.79 16 5 N -0.53 -9.91 3.98 -231.61 -0.92 -10.83 16 6 C 0.04 0.86 4.19 -6.65 -0.03 0.83 16 7 C 0.24 6.00 2.00 -69.48 -0.14 5.86 16 8 H 0.04 1.25 6.93 -51.92 -0.36 0.89 16 9 C -0.52 -14.59 8.68 -34.44 -0.30 -14.89 16 10 H 0.05 1.36 7.72 -52.49 -0.41 0.96 16 11 C 0.08 2.40 5.39 -17.82 -0.10 2.30 16 12 N -0.85 -25.17 12.78 55.43 0.71 -24.47 16 13 Si 0.88 21.73 29.54 -169.99 -5.02 16.71 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 17 N -0.66 -15.72 5.43 -107.60 -0.58 -16.30 16 18 C 0.07 1.50 6.49 -2.82 -0.02 1.48 16 19 C -0.15 -2.68 4.92 -27.47 -0.14 -2.82 16 20 C 0.09 1.61 2.44 -68.26 -0.17 1.44 16 21 H 0.04 0.64 7.13 -51.93 -0.37 0.27 16 22 C -0.15 -2.02 7.74 37.16 0.29 -1.73 16 23 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.86 6.15 -51.93 -0.32 0.54 16 28 H 0.08 1.20 5.55 -51.93 -0.29 0.91 16 29 H 0.04 0.53 8.13 -51.93 -0.42 0.11 16 30 H 0.00 -0.01 7.58 -51.93 -0.39 -0.40 16 31 H 0.07 1.48 5.58 -51.93 -0.29 1.19 16 32 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.30 6.89 7.51 -39.29 -0.30 6.60 16 34 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 1.56 7.23 -51.93 -0.38 1.19 16 37 H 0.05 0.82 7.71 -51.93 -0.40 0.42 16 38 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 39 H 0.05 0.64 6.42 -51.93 -0.33 0.31 16 40 H 0.06 0.90 8.02 -51.93 -0.42 0.48 16 LS Contribution 303.89 15.07 4.58 4.58 Total: -1.00 -30.25 303.89 -7.66 -37.90 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -6.76 Total: 3.00 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 0.72 Total: -4.05 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.80 Total: -51.60 kcal Atomic # 8 Polarization: -6.17 SS G_CDS: -0.37 Total: -6.55 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.25 -7.66 -37.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220561885.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.491 kcal (2) G-P(sol) polarization free energy of solvation -30.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds