Wall clock time and date at job start Mon Mar 30 2020 04:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 114.00038 * 2 1 4 4 C 1.53001 * 109.47029 * 180.02562 * 3 2 1 5 5 N 1.46893 * 109.47461 * 63.02701 * 4 3 2 6 6 C 1.40208 * 110.95338 * 63.37637 * 5 4 3 7 7 C 1.54213 * 111.96744 * 187.99774 * 6 5 4 8 8 H 1.09010 * 109.56834 * 41.19080 * 7 6 5 9 9 C 1.50697 * 109.57297 * 161.43894 * 7 6 5 10 10 H 1.07997 * 119.99861 * 359.75229 * 9 7 6 11 11 C 1.37876 * 119.99742 * 179.75065 * 9 7 6 12 12 N 1.31517 * 120.00239 * 359.97438 * 11 9 7 13 13 Si 1.86799 * 119.99975 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47175 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47126 * 119.99920 * 13 11 9 16 16 H 1.48498 * 109.47149 * 239.99927 * 13 11 9 17 17 N 1.44572 * 108.95948 * 281.31777 * 7 6 5 18 18 C 1.48065 * 113.85850 * 94.28502 * 17 7 6 19 19 C 1.53695 * 112.47461 * 318.31682 * 18 17 7 20 20 C 1.47909 * 110.99797 * 191.45190 * 5 4 3 21 21 H 1.09000 * 109.63404 * 273.47307 * 20 5 4 22 22 C 1.53001 * 109.63493 * 34.07180 * 20 5 4 23 23 H 1.08994 * 109.46756 * 300.00121 * 1 2 3 24 24 H 1.08996 * 109.47082 * 59.99865 * 1 2 3 25 25 H 1.09003 * 109.46658 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47207 * 59.99711 * 3 2 1 27 27 H 1.09004 * 109.47028 * 299.99977 * 3 2 1 28 28 H 1.09000 * 109.46748 * 303.02319 * 4 3 2 29 29 H 1.09002 * 109.46947 * 183.03184 * 4 3 2 30 30 H 1.08994 * 108.86950 * 67.46834 * 6 5 4 31 31 H 1.08999 * 109.16580 * 308.73197 * 6 5 4 32 32 H 0.97001 * 119.99937 * 179.97438 * 12 11 9 33 33 H 1.00897 * 110.99920 * 328.16511 * 17 7 6 34 34 H 1.08996 * 108.88469 * 79.09225 * 18 17 7 35 35 H 1.08998 * 108.88356 * 197.64507 * 18 17 7 36 36 H 1.08999 * 108.95396 * 79.22696 * 19 18 17 37 37 H 1.08998 * 108.96076 * 197.88501 * 19 18 17 38 38 H 1.09001 * 109.46731 * 179.00229 * 22 20 5 39 39 H 1.08993 * 109.46829 * 299.00190 * 22 20 5 40 40 H 1.08992 * 109.46939 * 59.00437 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9736 0.5200 -1.2352 6 6 3.6468 1.2884 -2.3615 7 6 3.9154 0.5284 -3.6761 8 1 3.5980 -0.5090 -3.5695 9 6 3.1498 1.1776 -4.8001 10 1 2.5304 2.0403 -4.6039 11 6 3.2401 0.6702 -6.0789 12 7 3.9947 -0.3801 -6.3179 13 14 2.2916 1.4753 -7.4723 14 1 1.5245 2.6324 -6.9452 15 1 3.2425 1.9447 -8.5119 16 1 1.3544 0.4893 -8.0677 17 7 5.3313 0.5745 -3.9645 18 6 6.0817 -0.6027 -3.4711 19 6 5.6341 -1.0384 -2.0668 20 6 5.4007 0.1397 -1.1547 21 1 6.0214 0.9774 -1.4725 22 6 5.7494 -0.2470 0.2840 23 1 -0.3632 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 3.8538 0.5974 0.8608 29 1 3.9788 2.1789 0.0537 30 1 4.2437 2.2003 -2.3514 31 1 2.5914 1.5573 -2.3172 32 1 4.0579 -0.7372 -7.2176 33 1 5.7414 1.4323 -3.6266 34 1 5.9314 -1.4319 -4.1623 35 1 7.1432 -0.3572 -3.4410 36 1 4.7094 -1.6094 -2.1512 37 1 6.4036 -1.6760 -1.6317 38 1 6.7969 -0.5436 0.3367 39 1 5.5798 0.6062 0.9407 40 1 5.1199 -1.0790 0.5993 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220561885.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:39 Heat of formation + Delta-G solvation = -45.023925 kcal Electronic energy + Delta-G solvation = -19068.149026 eV Core-core repulsion = 16303.663906 eV Total energy + Delta-G solvation = -2764.485121 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.80966 -38.56745 -36.32623 -34.88781 -33.52771 -30.95386 -29.44060 -28.13795 -27.02366 -25.85347 -24.26741 -23.00620 -21.26360 -20.54472 -18.56052 -17.46545 -17.26226 -16.60336 -16.51917 -16.12505 -15.91186 -15.69553 -15.35976 -14.46954 -14.27682 -14.02471 -13.78848 -13.37019 -13.27866 -12.93908 -12.72339 -12.61301 -12.54502 -12.42676 -12.38836 -12.12752 -11.87804 -11.50891 -11.30059 -11.20252 -10.96919 -10.45865 -10.43884 -8.95360 -8.48458 -7.89528 -6.09927 1.42776 1.44296 1.54691 2.49338 2.94463 3.07010 3.29496 3.93144 4.00593 4.09390 4.16639 4.30792 4.33854 4.44425 4.48222 4.52498 4.57866 4.59841 4.61416 4.69171 4.71748 4.84161 4.88093 4.92819 5.06134 5.09902 5.19099 5.35366 5.37580 5.46225 5.49888 5.83726 6.29450 6.34093 6.44464 6.59224 6.79423 7.14816 7.34065 7.61683 9.12901 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.019772 B = 0.008742 C = 0.006625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.829893 B = 3202.203140 C = 4225.086251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.061 3.939 4 C 0.052 3.948 5 N -0.551 5.551 6 C 0.064 3.936 7 C 0.245 3.755 8 H -0.002 1.002 9 C -0.541 4.541 10 H 0.045 0.955 11 C 0.034 3.966 12 N -0.886 5.886 13 Si 0.947 3.053 14 H -0.269 1.269 15 H -0.283 1.283 16 H -0.284 1.284 17 N -0.676 5.676 18 C 0.075 3.925 19 C -0.134 4.134 20 C 0.094 3.906 21 H 0.033 0.967 22 C -0.139 4.139 23 H 0.058 0.942 24 H 0.032 0.968 25 H 0.090 0.910 26 H 0.076 0.924 27 H 0.035 0.965 28 H 0.102 0.898 29 H 0.053 0.947 30 H 0.000 1.000 31 H 0.056 0.944 32 H 0.252 0.748 33 H 0.312 0.688 34 H 0.032 0.968 35 H 0.063 0.937 36 H 0.040 0.960 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.050 2.393 14.959 15.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.016 4.016 4 C -0.075 4.075 5 N -0.276 5.276 6 C -0.068 4.068 7 C 0.136 3.864 8 H 0.016 0.984 9 C -0.580 4.580 10 H 0.063 0.937 11 C -0.168 4.168 12 N -0.523 5.523 13 Si 0.773 3.227 14 H -0.193 1.193 15 H -0.210 1.210 16 H -0.210 1.210 17 N -0.305 5.305 18 C -0.055 4.055 19 C -0.174 4.174 20 C -0.013 4.013 21 H 0.051 0.949 22 C -0.196 4.196 23 H 0.077 0.923 24 H 0.051 0.949 25 H 0.108 0.892 26 H 0.094 0.906 27 H 0.053 0.947 28 H 0.121 0.879 29 H 0.071 0.929 30 H 0.017 0.983 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.129 0.871 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.107 1.415 14.161 14.232 hybrid contribution -0.392 1.348 -0.386 1.456 sum -0.499 2.762 13.775 14.058 Atomic orbital electron populations 1.22845 0.80553 1.03291 1.00225 1.87956 1.20427 1.28244 1.95368 1.22723 0.93820 0.84843 1.00166 1.22365 0.93558 0.97891 0.93647 1.59191 1.18556 1.47549 1.02280 1.21627 0.99374 0.93528 0.92239 1.18585 0.85174 0.93775 0.88839 0.98369 1.21387 1.27515 1.14655 0.94431 0.93668 1.25620 0.95428 0.95187 1.00605 1.70203 1.38469 1.23379 1.20209 0.85717 0.78519 0.78617 0.79827 1.19349 1.20956 1.20970 1.59553 1.03724 1.02280 1.64900 1.22124 0.96486 0.93973 0.92897 1.21988 1.01057 0.98284 0.96101 1.21303 0.86616 0.96393 0.97009 0.94861 1.21993 1.02120 1.02075 0.93453 0.92309 0.94945 0.89172 0.90618 0.94701 0.87948 0.92937 0.98265 0.92557 0.93937 0.87090 0.94948 0.91810 0.94133 0.89984 0.90532 0.91088 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 11.01 113.37 1.25 1.92 16 2 O -0.40 -12.98 10.62 -148.98 -1.58 -14.56 16 3 C 0.06 1.73 5.88 71.98 0.42 2.16 16 4 C 0.05 1.48 4.55 86.30 0.39 1.88 16 5 N -0.55 -20.08 3.98 -886.67 -3.53 -23.61 16 6 C 0.06 2.74 4.19 87.92 0.37 3.11 16 7 C 0.25 12.79 2.00 45.02 0.09 12.88 16 8 H 0.00 -0.10 6.93 -2.38 -0.02 -0.12 16 9 C -0.54 -31.05 8.68 25.60 0.22 -30.83 16 10 H 0.05 2.56 7.72 -2.91 -0.02 2.54 16 11 C 0.03 1.97 5.39 84.65 0.46 2.42 16 12 N -0.89 -53.72 12.78 21.45 0.27 -53.44 16 13 Si 0.95 45.38 29.54 68.60 2.03 47.40 16 14 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 15 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 16 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 17 N -0.68 -33.00 5.43 -494.32 -2.69 -35.68 16 18 C 0.07 3.18 6.49 86.31 0.56 3.74 16 19 C -0.13 -4.89 4.92 30.12 0.15 -4.74 16 20 C 0.09 3.03 2.44 44.01 0.11 3.14 16 21 H 0.03 1.11 7.13 -2.39 -0.02 1.10 16 22 C -0.14 -3.29 7.74 71.98 0.56 -2.73 16 23 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.03 1.11 6.15 -2.39 -0.01 1.09 16 28 H 0.10 2.56 5.55 -2.39 -0.01 2.55 16 29 H 0.05 1.35 8.13 -2.39 -0.02 1.33 16 30 H 0.00 -0.02 7.58 -2.39 -0.02 -0.04 16 31 H 0.06 2.52 5.58 -2.39 -0.01 2.51 16 32 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 33 H 0.31 14.17 7.51 -89.70 -0.67 13.50 16 34 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.04 1.75 7.23 -2.39 -0.02 1.73 16 37 H 0.08 2.45 7.71 -2.39 -0.02 2.44 16 38 H 0.08 1.52 8.09 -2.39 -0.02 1.50 16 39 H 0.07 1.43 6.42 -2.39 -0.02 1.42 16 40 H 0.06 1.50 8.02 -2.39 -0.02 1.48 16 Total: -1.00 -67.19 303.89 -0.59 -67.78 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.34 Total: 19.18 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: 4.57 Total: -7.05 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -5.94 Total: -112.74 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -1.58 Total: -14.56 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Total: -67.19 -0.59 -67.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220561885.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.754 kcal (2) G-P(sol) polarization free energy of solvation -67.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds