Wall clock time and date at job start Mon Mar 30 2020 04:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99865 * 2 1 4 4 C 1.53006 * 109.46995 * 179.97438 * 3 2 1 5 5 N 1.46897 * 109.46861 * 64.99861 * 4 3 2 6 6 C 1.47739 * 111.00500 * 288.98754 * 5 4 3 7 7 C 1.50779 * 111.91152 * 192.81043 * 6 5 4 8 8 H 1.09004 * 109.73485 * 334.91366 * 7 6 5 9 9 C 1.50702 * 109.73491 * 214.26347 * 7 6 5 10 10 H 1.08000 * 120.00330 * 0.65594 * 9 7 6 11 11 C 1.37882 * 119.99775 * 180.64856 * 9 7 6 12 12 N 1.31508 * 120.00107 * 179.72261 * 11 9 7 13 13 Si 1.86799 * 119.99914 * 0.02562 * 11 9 7 14 14 H 1.48503 * 109.47384 * 269.72222 * 13 11 9 15 15 H 1.48505 * 109.47177 * 29.72301 * 13 11 9 16 16 H 1.48497 * 109.47236 * 149.71861 * 13 11 9 17 17 N 1.47683 * 108.13705 * 94.58877 * 7 6 5 18 18 C 1.40051 * 114.59230 * 278.76055 * 17 7 6 19 19 C 1.54511 * 111.54462 * 61.37502 * 18 17 7 20 20 C 1.48069 * 110.99965 * 161.38462 * 5 4 3 21 21 H 1.08999 * 108.78875 * 205.24278 * 20 5 4 22 22 C 1.53005 * 108.78564 * 323.57373 * 20 5 4 23 23 H 1.09007 * 109.47066 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46949 * 300.00091 * 1 2 3 25 25 H 1.09004 * 109.47278 * 60.00284 * 1 2 3 26 26 H 1.09002 * 109.47170 * 60.00079 * 3 2 1 27 27 H 1.09004 * 109.47058 * 299.99741 * 3 2 1 28 28 H 1.08997 * 109.46670 * 305.00032 * 4 3 2 29 29 H 1.09000 * 109.46722 * 184.99694 * 4 3 2 30 30 H 1.09002 * 108.99698 * 72.17595 * 6 5 4 31 31 H 1.09005 * 108.99261 * 313.43610 * 6 5 4 32 32 H 0.97003 * 120.00255 * 180.27851 * 12 11 9 33 33 H 1.00898 * 110.99809 * 45.40598 * 17 7 6 34 34 H 1.08994 * 109.02881 * 300.85124 * 18 17 7 35 35 H 1.09008 * 109.02075 * 181.88300 * 18 17 7 36 36 H 1.09002 * 109.56205 * 164.18237 * 19 18 17 37 37 H 1.08998 * 109.56419 * 43.85640 * 19 18 17 38 38 H 1.08998 * 109.46848 * 67.94759 * 22 20 5 39 39 H 1.08998 * 109.46881 * 187.94663 * 22 20 5 40 40 H 1.09001 * 109.47352 * 307.94317 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9779 0.5622 -1.2543 6 6 3.6171 -0.8699 -1.2910 7 6 4.3192 -1.5986 -2.4088 8 1 4.5779 -0.8958 -3.2009 9 6 3.4197 -2.6757 -2.9581 10 1 2.4304 -2.8145 -2.5477 11 6 3.8598 -3.4841 -3.9848 12 7 3.0769 -4.4277 -4.4605 13 14 5.5711 -3.2445 -4.6943 14 1 5.5091 -2.2793 -5.8212 15 1 6.4747 -2.7175 -3.6402 16 1 6.0900 -4.5463 -5.1855 17 7 5.5483 -2.2067 -1.8605 18 6 6.6331 -1.3281 -1.7479 19 6 6.3175 -0.1565 -0.7913 20 6 5.4150 0.8226 -1.4979 21 1 5.6054 0.7652 -2.5696 22 6 5.7489 2.2351 -1.0138 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8507 0.5685 0.8427 29 1 3.9784 2.1766 0.0902 30 1 2.5398 -0.9610 -1.4297 31 1 3.8909 -1.3292 -0.3411 32 1 3.3880 -4.9990 -5.1800 33 1 5.3633 -2.6660 -0.9814 34 1 6.8708 -0.9288 -2.7339 35 1 7.4958 -1.8756 -1.3681 36 1 7.2441 0.3416 -0.5061 37 1 5.8170 -0.5370 0.0991 38 1 5.6700 2.2748 0.0726 39 1 6.7649 2.4913 -1.3140 40 1 5.0496 2.9452 -1.4551 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220562001.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:46 Heat of formation + Delta-G solvation = -15.531469 kcal Electronic energy + Delta-G solvation = -19263.254181 eV Core-core repulsion = 16500.047949 eV Total energy + Delta-G solvation = -2763.206232 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.47225 -37.48448 -35.13676 -33.04200 -31.74100 -29.97411 -28.11832 -26.74818 -25.72514 -23.97984 -22.82220 -21.80735 -20.27989 -18.36926 -17.02522 -16.44289 -16.09099 -15.31330 -14.88939 -14.74457 -14.35079 -13.99132 -13.67726 -13.41508 -13.09916 -12.82184 -12.44573 -12.02670 -11.76227 -11.49951 -11.39841 -11.17774 -11.05926 -10.97268 -10.72559 -10.56871 -10.24647 -10.08371 -9.67733 -9.48927 -9.28193 -8.99027 -8.37178 -7.65290 -6.91536 -5.87795 -3.93715 3.56829 3.66062 3.91688 4.06666 4.31033 4.78851 5.07315 5.11867 5.28991 5.33557 5.40384 5.44551 5.51982 5.58914 5.61956 5.63326 5.71348 5.76123 5.85101 5.92785 5.99958 6.02991 6.15199 6.19454 6.20760 6.38120 6.46504 6.59710 6.70386 6.92523 7.28737 7.41999 7.72175 7.73589 7.88522 8.38487 8.54459 8.83076 9.14431 9.79328 11.22553 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.020398 B = 0.010018 C = 0.007226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.330804 B = 2794.306794 C = 3873.844923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.376 6.376 3 C 0.067 3.933 4 C 0.048 3.952 5 N -0.539 5.539 6 C 0.056 3.944 7 C 0.192 3.808 8 H 0.041 0.959 9 C -0.507 4.507 10 H 0.070 0.930 11 C 0.084 3.916 12 N -0.904 5.904 13 Si 0.870 3.130 14 H -0.299 1.299 15 H -0.203 1.203 16 H -0.305 1.305 17 N -0.694 5.694 18 C 0.080 3.920 19 C -0.189 4.189 20 C 0.082 3.918 21 H 0.079 0.921 22 C -0.152 4.152 23 H 0.084 0.916 24 H 0.032 0.968 25 H 0.040 0.960 26 H 0.042 0.958 27 H 0.055 0.945 28 H 0.032 0.968 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.016 0.984 32 H 0.260 0.740 33 H 0.328 0.672 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.430 12.899 9.690 16.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.295 6.295 3 C -0.011 4.011 4 C -0.080 4.080 5 N -0.264 5.264 6 C -0.072 4.072 7 C 0.086 3.914 8 H 0.059 0.941 9 C -0.546 4.546 10 H 0.088 0.912 11 C -0.119 4.119 12 N -0.542 5.542 13 Si 0.698 3.302 14 H -0.227 1.227 15 H -0.125 1.125 16 H -0.232 1.232 17 N -0.325 5.325 18 C -0.053 4.053 19 C -0.231 4.231 20 C -0.026 4.026 21 H 0.097 0.903 22 C -0.209 4.209 23 H 0.103 0.897 24 H 0.050 0.950 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.149 0.851 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.484 12.607 8.607 15.466 hybrid contribution 0.702 0.308 0.979 1.243 sum 3.185 12.915 9.586 16.396 Atomic orbital electron populations 1.22692 0.81898 1.02716 0.99177 1.88082 1.19019 1.27351 1.95053 1.22575 0.93828 0.85233 0.99423 1.22316 0.93482 1.00149 0.92056 1.62350 1.14610 1.17003 1.32423 1.22809 1.03176 0.83592 0.97595 1.19343 0.86062 0.93832 0.92177 0.94097 1.20849 1.00250 1.16045 1.17465 0.91175 1.24964 0.97524 0.93793 0.95643 1.69967 1.37213 1.19913 1.27132 0.87141 0.87460 0.76681 0.78966 1.22673 1.12463 1.23232 1.58757 1.08683 1.33118 1.31936 1.20961 0.95183 0.91782 0.97375 1.23060 0.99571 0.99957 1.00529 1.21489 0.87077 0.93510 1.00475 0.90326 1.22144 1.01100 0.97134 1.00512 0.89704 0.94974 0.94167 0.93992 0.92675 0.94946 0.89218 0.88507 0.96527 0.93064 0.85130 0.92331 0.92968 0.92281 0.92552 0.92934 0.92596 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.38 -6.24 7.72 -35.23 -0.27 -6.51 16 3 C 0.07 0.93 6.24 37.16 0.23 1.16 16 4 C 0.05 0.70 4.92 -3.82 -0.02 0.69 16 5 N -0.54 -9.44 4.63 -227.72 -1.06 -10.50 16 6 C 0.06 1.16 3.75 -4.48 -0.02 1.15 16 7 C 0.19 4.50 1.47 -69.55 -0.10 4.39 16 8 H 0.04 1.02 6.22 -51.93 -0.32 0.70 16 9 C -0.51 -14.44 9.24 -34.44 -0.32 -14.76 16 10 H 0.07 2.18 7.71 -52.49 -0.40 1.78 16 11 C 0.08 2.48 5.47 -17.82 -0.10 2.38 16 12 N -0.90 -28.48 13.96 55.43 0.77 -27.71 16 13 Si 0.87 22.25 26.96 -169.99 -4.58 17.67 16 14 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 15 H -0.20 -4.75 3.81 56.52 0.22 -4.54 16 16 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 17 N -0.69 -14.78 3.43 -112.43 -0.39 -15.16 16 18 C 0.08 1.43 5.07 -6.57 -0.03 1.39 16 19 C -0.19 -2.93 5.15 -27.07 -0.14 -3.07 16 20 C 0.08 1.31 2.33 -68.20 -0.16 1.15 16 21 H 0.08 1.39 6.52 -51.93 -0.34 1.06 16 22 C -0.15 -1.86 7.52 37.16 0.28 -1.58 16 23 H 0.08 1.10 8.14 -51.92 -0.42 0.67 16 24 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.03 0.50 7.77 -51.93 -0.40 0.10 16 29 H 0.09 1.10 5.06 -51.93 -0.26 0.83 16 30 H 0.10 2.24 5.39 -51.93 -0.28 1.96 16 31 H 0.02 0.35 6.43 -51.93 -0.33 0.02 16 32 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 33 H 0.33 6.84 8.15 -39.29 -0.32 6.52 16 34 H 0.06 1.10 7.03 -51.93 -0.36 0.73 16 35 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 36 H 0.06 0.80 7.73 -51.93 -0.40 0.39 16 37 H 0.06 0.92 7.00 -51.93 -0.36 0.56 16 38 H 0.05 0.59 6.64 -51.93 -0.34 0.25 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.73 7.92 -51.93 -0.41 0.32 16 LS Contribution 291.73 15.07 4.40 4.40 Total: -1.00 -31.35 291.73 -7.22 -38.57 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.83 Total: 4.82 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: 0.74 Total: -5.57 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.67 Total: -53.37 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.27 Total: -6.51 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.58 Total: 17.67 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.35 -7.22 -38.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220562001.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.038 kcal (2) G-P(sol) polarization free energy of solvation -31.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds