Wall clock time and date at job start Mon Mar 30 2020 04:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99613 * 2 1 4 4 C 1.53008 * 109.47111 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.46932 * 37.16695 * 4 3 2 6 6 C 1.44174 * 111.00010 * 77.90514 * 5 4 3 7 7 H 1.09004 * 108.77400 * 96.77465 * 6 5 4 8 8 C 1.53000 * 108.85630 * 338.33543 * 6 5 4 9 9 C 1.54323 * 112.62068 * 217.52530 * 6 5 4 10 10 C 1.54320 * 111.72339 * 318.91844 * 9 6 5 11 11 N 1.44183 * 112.61045 * 318.92641 * 10 9 6 12 12 C 1.48071 * 109.90037 * 94.35347 * 11 10 9 13 13 C 1.46096 * 112.15490 * 279.63121 * 12 11 10 14 14 H 1.09003 * 108.94799 * 299.99780 * 13 12 11 15 15 C 1.50707 * 108.94596 * 181.37446 * 13 12 11 16 16 H 1.07998 * 120.00015 * 245.95191 * 15 13 12 17 17 C 1.37878 * 119.99952 * 65.94787 * 15 13 12 18 18 N 1.31511 * 119.99943 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 119.99882 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46928 * 60.00280 * 19 17 15 21 21 H 1.48501 * 109.47048 * 179.97438 * 19 17 15 22 22 H 1.48491 * 109.47195 * 300.00146 * 19 17 15 23 23 H 1.09001 * 109.47547 * 59.99939 * 1 2 3 24 24 H 1.08997 * 109.47150 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47080 * 299.99909 * 1 2 3 26 26 H 1.08998 * 109.47511 * 60.00132 * 3 2 1 27 27 H 1.09003 * 109.47581 * 299.99691 * 3 2 1 28 28 H 1.09001 * 109.46364 * 277.17076 * 4 3 2 29 29 H 1.08994 * 109.47195 * 157.16566 * 4 3 2 30 30 H 1.08995 * 109.47018 * 286.31437 * 8 6 5 31 31 H 1.08999 * 109.46701 * 46.31194 * 8 6 5 32 32 H 1.08997 * 109.47095 * 166.31436 * 8 6 5 33 33 H 1.08994 * 109.03205 * 198.34357 * 9 6 5 34 34 H 1.08994 * 109.02923 * 79.49468 * 9 6 5 35 35 H 1.08999 * 108.85817 * 198.11702 * 10 9 6 36 36 H 1.09008 * 108.85289 * 79.72870 * 10 9 6 37 37 H 1.00905 * 110.99390 * 217.52785 * 11 10 9 38 38 H 1.09002 * 108.94613 * 158.94412 * 12 11 10 39 39 H 1.08996 * 108.94952 * 40.31908 * 12 11 10 40 40 H 0.97007 * 119.99908 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9361 0.0461 -0.8377 6 6 3.8683 0.3847 -2.2375 7 1 4.8627 0.6751 -2.5767 8 6 2.9201 1.5725 -2.4136 9 6 3.3670 -0.7868 -3.1080 10 6 3.9776 -2.1320 -2.6619 11 7 5.3755 -2.0221 -2.3261 12 6 5.5284 -1.8039 -0.8696 13 6 5.3025 -0.4100 -0.4946 14 1 6.0262 0.2180 -1.0143 15 6 5.5087 -0.2634 0.9911 16 1 4.6755 -0.0085 1.6293 17 6 6.7608 -0.4549 1.5355 18 7 7.7752 -0.7659 0.7584 19 14 7.0162 -0.2739 3.3771 20 1 6.1597 -1.2526 4.0941 21 1 8.4414 -0.5293 3.7067 22 1 6.6502 1.1033 3.7946 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6885 1.8464 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 3.8878 1.0280 1.0189 29 1 3.9722 2.1003 -0.3994 30 1 1.8909 1.2380 -2.2842 31 1 3.1507 2.3347 -1.6694 32 1 3.0434 1.9908 -3.4125 33 1 3.6396 -0.5999 -4.1466 34 1 2.2814 -0.8468 -3.0321 35 1 3.8652 -2.8551 -3.4697 36 1 3.4333 -2.4939 -1.7896 37 1 5.8845 -2.8407 -2.6246 38 1 6.5370 -2.0912 -0.5726 39 1 4.8127 -2.4330 -0.3404 40 1 8.6561 -0.9009 1.1416 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220563568.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:56 Heat of formation + Delta-G solvation = 9.618123 kcal Electronic energy + Delta-G solvation = -19548.143352 eV Core-core repulsion = 16786.027688 eV Total energy + Delta-G solvation = -2762.115664 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.08025 -36.99342 -34.69265 -33.67476 -31.22302 -29.63767 -27.78651 -26.49740 -25.86148 -24.14622 -21.99842 -21.27966 -19.55937 -18.59900 -16.70577 -15.97418 -15.78102 -15.31711 -14.73577 -14.33052 -14.17912 -13.92964 -13.61355 -12.99943 -12.88794 -12.27763 -12.18225 -11.71890 -11.51297 -11.31662 -10.99139 -10.91229 -10.65764 -10.62095 -10.54416 -10.28552 -9.97237 -9.81053 -9.59101 -9.36232 -8.92908 -8.60573 -8.42050 -7.41795 -6.86918 -6.03339 -4.08388 3.31261 3.36118 3.38914 4.37496 4.41165 5.08777 5.20297 5.40548 5.52957 5.55609 5.58881 5.65845 5.75421 5.83426 5.90310 5.93881 5.97108 6.15245 6.27937 6.35848 6.37685 6.49260 6.59934 6.68451 6.82194 6.91429 6.96165 6.97713 7.23017 7.53164 7.74344 7.81726 7.91074 8.11927 8.31706 8.34543 8.52866 8.83122 9.04426 9.57488 11.03781 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.020544 B = 0.010062 C = 0.007853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.570228 B = 2782.190437 C = 3564.488415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.351 6.351 3 C 0.047 3.953 4 C 0.047 3.953 5 N -0.509 5.509 6 C 0.097 3.903 7 H 0.040 0.960 8 C -0.174 4.174 9 C -0.089 4.089 10 C 0.074 3.926 11 N -0.695 5.695 12 C 0.080 3.920 13 C 0.218 3.782 14 H 0.012 0.988 15 C -0.520 4.520 16 H 0.072 0.928 17 C 0.061 3.939 18 N -0.889 5.889 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.029 0.971 24 H 0.077 0.923 25 H 0.029 0.971 26 H 0.031 0.969 27 H 0.055 0.945 28 H 0.108 0.892 29 H 0.038 0.962 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.040 0.960 33 H 0.044 0.956 34 H 0.051 0.949 35 H 0.035 0.965 36 H 0.039 0.961 37 H 0.324 0.676 38 H 0.092 0.908 39 H 0.017 0.983 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.910 1.878 -4.268 10.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.268 6.268 3 C -0.030 4.030 4 C -0.081 4.081 5 N -0.234 5.234 6 C -0.013 4.013 7 H 0.058 0.942 8 C -0.231 4.231 9 C -0.129 4.129 10 C -0.057 4.057 11 N -0.324 5.324 12 C -0.048 4.048 13 C 0.112 3.888 14 H 0.030 0.970 15 C -0.558 4.558 16 H 0.090 0.910 17 C -0.141 4.141 18 N -0.527 5.527 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.203 1.203 23 H 0.048 0.952 24 H 0.095 0.905 25 H 0.048 0.952 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.126 0.874 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.140 0.860 38 H 0.111 0.889 39 H 0.035 0.965 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.873 1.944 -4.333 10.956 hybrid contribution 0.270 0.095 1.114 1.151 sum -9.603 2.039 -3.218 10.331 Atomic orbital electron populations 1.22661 0.83840 1.01762 0.98646 1.88202 1.16662 1.27036 1.94906 1.23382 0.95664 0.85087 0.98893 1.22444 0.90847 0.92705 1.02122 1.61532 1.28818 1.32312 1.00733 1.21165 0.96919 0.92584 0.90677 0.94229 1.22860 1.00361 0.99256 1.00627 1.21956 0.98431 0.95325 0.97146 1.21454 0.90120 0.95660 0.98469 1.60027 1.09767 1.43339 1.19282 1.21155 1.01894 0.98928 0.82819 1.18203 0.82958 0.92764 0.94907 0.97002 1.21422 0.94327 1.47788 0.92302 0.91026 1.24979 0.96046 0.95121 0.97942 1.69908 1.00426 1.47604 1.34784 0.86632 0.77003 0.78635 0.85596 1.20215 1.21368 1.20291 0.95238 0.90456 0.95236 0.95128 0.92717 0.87377 0.94454 0.92088 0.91416 0.94060 0.93674 0.93037 0.94672 0.94263 0.85975 0.88945 0.96479 0.92834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.35 -6.44 10.04 -35.23 -0.35 -6.79 16 3 C 0.05 0.79 5.22 37.16 0.19 0.99 16 4 C 0.05 0.94 4.78 -3.82 -0.02 0.93 16 5 N -0.51 -11.18 3.49 -224.33 -0.78 -11.97 16 6 C 0.10 1.91 2.44 -68.48 -0.17 1.74 16 7 H 0.04 0.89 7.16 -51.93 -0.37 0.52 16 8 C -0.17 -2.84 7.19 37.16 0.27 -2.57 16 9 C -0.09 -1.61 5.79 -25.35 -0.15 -1.76 16 10 C 0.07 1.40 6.00 -4.58 -0.03 1.37 16 11 N -0.69 -14.52 6.44 -117.73 -0.76 -15.27 16 12 C 0.08 1.95 5.17 -6.45 -0.03 1.92 16 13 C 0.22 5.52 1.72 -71.49 -0.12 5.40 16 14 H 0.01 0.35 7.35 -51.93 -0.38 -0.03 16 15 C -0.52 -13.93 7.45 -34.44 -0.26 -14.19 16 16 H 0.07 1.91 5.47 -52.49 -0.29 1.63 16 17 C 0.06 1.66 5.29 -17.82 -0.09 1.56 16 18 N -0.89 -25.02 11.63 55.43 0.64 -24.38 16 19 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.83 4.42 -51.93 -0.23 0.60 16 28 H 0.11 2.43 4.64 -51.93 -0.24 2.19 16 29 H 0.04 0.73 6.18 -51.93 -0.32 0.41 16 30 H 0.06 0.96 5.97 -51.93 -0.31 0.65 16 31 H 0.07 1.09 4.43 -51.93 -0.23 0.86 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.88 7.80 -51.93 -0.41 0.48 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.04 0.82 7.17 -51.92 -0.37 0.45 16 37 H 0.32 6.08 8.89 -39.29 -0.35 5.73 16 38 H 0.09 2.47 6.24 -51.93 -0.32 2.15 16 39 H 0.02 0.43 7.37 -51.93 -0.38 0.05 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 292.91 15.07 4.41 4.41 Total: -1.00 -28.61 292.91 -7.45 -36.06 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.30 Total: 5.07 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 0.71 Total: -3.11 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: -0.90 Total: -51.62 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -0.35 Total: -6.79 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.61 -7.45 -36.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220563568.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.674 kcal (2) G-P(sol) polarization free energy of solvation -28.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds