Wall clock time and date at job start Mon Mar 30 2020 04:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42891 * 114.00002 * 2 1 4 4 C 1.53003 * 109.47378 * 183.59208 * 3 2 1 5 5 N 1.46893 * 109.47240 * 78.93183 * 4 3 2 6 6 C 1.48060 * 111.00619 * 289.55579 * 5 4 3 7 7 H 1.08995 * 108.79614 * 205.12551 * 6 5 4 8 8 C 1.53002 * 108.78752 * 323.45668 * 6 5 4 9 9 C 1.50745 * 112.93949 * 84.34619 * 6 5 4 10 10 C 1.54519 * 108.94258 * 92.65713 * 9 6 5 11 11 N 1.40086 * 111.50547 * 283.99110 * 10 9 6 12 12 C 1.47792 * 114.51451 * 61.47126 * 11 10 9 13 13 C 1.47756 * 110.99705 * 57.15532 * 5 4 3 14 14 H 1.09007 * 108.98752 * 313.35131 * 13 5 4 15 15 C 1.50693 * 108.99334 * 72.17965 * 13 5 4 16 16 H 1.08005 * 119.99955 * 6.26851 * 15 13 5 17 17 C 1.37877 * 119.99932 * 186.26561 * 15 13 5 18 18 N 1.31516 * 120.00167 * 5.95539 * 17 15 13 19 19 Si 1.86806 * 120.00082 * 185.95185 * 17 15 13 20 20 H 1.48501 * 109.47142 * 265.00662 * 19 17 15 21 21 H 1.48504 * 109.46734 * 25.00408 * 19 17 15 22 22 H 1.48494 * 109.47226 * 145.00465 * 19 17 15 23 23 H 1.08997 * 109.47194 * 64.93058 * 1 2 3 24 24 H 1.09002 * 109.47135 * 184.93548 * 1 2 3 25 25 H 1.09007 * 109.47232 * 304.93135 * 1 2 3 26 26 H 1.09002 * 109.47553 * 63.59168 * 3 2 1 27 27 H 1.09003 * 109.47438 * 303.59110 * 3 2 1 28 28 H 1.09004 * 109.46872 * 318.93610 * 4 3 2 29 29 H 1.09003 * 109.47529 * 198.94279 * 4 3 2 30 30 H 1.09003 * 109.47275 * 65.24393 * 8 6 5 31 31 H 1.09000 * 109.47373 * 185.24825 * 8 6 5 32 32 H 1.08997 * 109.46806 * 305.24586 * 8 6 5 33 33 H 1.09004 * 109.55780 * 212.49338 * 9 6 5 34 34 H 1.08996 * 109.55941 * 332.70762 * 9 6 5 35 35 H 1.09001 * 109.06740 * 44.51168 * 10 9 6 36 36 H 1.09001 * 109.07436 * 163.46662 * 10 9 6 37 37 H 1.00895 * 110.99673 * 294.74863 * 11 10 9 38 38 H 1.08995 * 109.71508 * 158.98530 * 12 11 10 39 39 H 1.09008 * 109.81129 * 38.25340 * 12 11 10 40 40 H 0.96995 * 119.99541 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5328 1.1858 -0.0904 5 7 3.9212 0.9172 -1.4813 6 6 3.5291 -0.4517 -1.8870 7 1 4.1830 -0.7794 -2.6950 8 6 3.7132 -1.3911 -0.6934 9 6 2.0994 -0.5384 -2.3570 10 6 2.0635 -0.3526 -3.8906 11 7 2.2385 0.9901 -4.2494 12 6 3.5317 1.5724 -3.8337 13 6 3.4191 1.9732 -2.3846 14 1 2.3728 2.1713 -2.1516 15 6 4.2179 3.2312 -2.1601 16 1 5.0745 3.2168 -1.5025 17 6 3.8551 4.4005 -2.7944 18 7 2.7471 4.4488 -3.5012 19 14 4.9375 5.9161 -2.6496 20 1 4.4395 6.7764 -1.5463 21 1 6.3341 5.5013 -2.3621 22 1 4.8992 6.6754 -3.9251 23 1 -0.3633 0.4354 -0.9308 24 1 -0.3633 -1.0239 0.0884 25 1 -0.3634 0.5885 0.8426 26 1 1.7404 1.8233 0.9204 27 1 1.6386 1.8686 -0.8561 28 1 3.8714 0.3679 0.5458 29 1 3.9909 2.1176 0.2414 30 1 3.0182 -1.1127 0.0988 31 1 3.5171 -2.4171 -1.0048 32 1 4.7356 -1.3128 -0.3238 33 1 1.6887 -1.5143 -2.0979 34 1 1.5101 0.2441 -1.8791 35 1 2.8582 -0.9480 -4.3401 36 1 1.1021 -0.7001 -4.2690 37 1 1.4666 1.5541 -3.9269 38 1 3.7527 2.4494 -4.4421 39 1 4.3244 0.8333 -3.9506 40 1 2.1850 3.6619 -3.5760 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220563627.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:59 Heat of formation + Delta-G solvation = -13.240769 kcal Electronic energy + Delta-G solvation = -20030.546982 eV Core-core repulsion = 17267.440083 eV Total energy + Delta-G solvation = -2763.106899 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.87740 -37.19159 -34.78083 -33.92287 -31.29508 -29.26623 -27.70371 -26.48721 -25.44096 -24.56637 -21.98324 -21.71182 -21.04745 -18.40827 -16.77001 -16.32652 -15.89780 -15.68206 -14.90909 -14.67507 -14.51675 -13.85218 -13.65440 -13.01677 -12.74995 -12.16697 -12.14742 -11.74494 -11.67510 -11.57937 -11.38568 -11.23807 -11.03519 -10.70848 -10.51848 -10.29762 -10.16535 -10.06416 -9.97589 -9.67146 -9.19156 -8.68646 -8.36873 -7.45916 -7.11624 -6.34749 -4.06227 3.42959 3.48051 3.63245 4.06529 4.49504 4.82510 5.13702 5.33793 5.38687 5.39169 5.45571 5.60489 5.66923 5.69586 5.74816 5.83860 5.86080 5.98904 6.03593 6.08813 6.28350 6.37731 6.44270 6.48662 6.55317 6.66799 6.72011 6.86196 6.92559 7.03395 7.36992 7.43468 7.87029 7.98036 8.11846 8.30158 8.35837 8.64053 8.89470 9.62723 11.01503 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.025405 B = 0.009488 C = 0.008653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.901435 B = 2950.300501 C = 3234.909171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.378 6.378 3 C 0.015 3.985 4 C 0.066 3.934 5 N -0.526 5.526 6 C 0.091 3.909 7 H 0.059 0.941 8 C -0.153 4.153 9 C -0.186 4.186 10 C 0.074 3.926 11 N -0.708 5.708 12 C 0.071 3.929 13 C 0.175 3.825 14 H 0.002 0.998 15 C -0.583 4.583 16 H 0.056 0.944 17 C 0.018 3.982 18 N -0.911 5.911 19 Si 1.071 2.929 20 H -0.291 1.291 21 H -0.288 1.288 22 H -0.285 1.285 23 H 0.036 0.964 24 H 0.078 0.922 25 H 0.035 0.965 26 H 0.040 0.960 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.042 0.958 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.336 0.664 38 H 0.088 0.912 39 H 0.055 0.945 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.022 -8.519 5.233 10.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.297 6.297 3 C -0.062 4.062 4 C -0.063 4.063 5 N -0.250 5.250 6 C -0.017 4.017 7 H 0.078 0.922 8 C -0.210 4.210 9 C -0.227 4.227 10 C -0.058 4.058 11 N -0.338 5.338 12 C -0.057 4.057 13 C 0.068 3.932 14 H 0.019 0.981 15 C -0.622 4.622 16 H 0.074 0.926 17 C -0.186 4.186 18 N -0.547 5.547 19 Si 0.899 3.101 20 H -0.218 1.218 21 H -0.214 1.214 22 H -0.211 1.211 23 H 0.055 0.945 24 H 0.097 0.903 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.156 0.844 38 H 0.106 0.894 39 H 0.074 0.926 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.010 -7.259 4.101 8.577 hybrid contribution -1.474 -1.335 1.481 2.480 sum -3.484 -8.594 5.582 10.824 Atomic orbital electron populations 1.22651 0.82823 1.01787 0.99661 1.88016 1.18335 1.28478 1.94874 1.23506 0.97829 0.84384 1.00512 1.22215 0.89701 1.02256 0.92106 1.62371 1.60172 1.00801 1.01646 1.21303 0.93854 0.89856 0.96728 0.92242 1.22252 1.01468 0.97679 0.99645 1.23271 0.99182 1.02490 0.97790 1.21045 1.00257 0.91212 0.93312 1.57971 1.06169 1.02763 1.66877 1.22157 0.88323 0.98709 0.96504 1.19966 0.94423 0.89575 0.89227 0.98116 1.21949 1.15237 0.93884 1.31146 0.92580 1.25751 0.97816 1.01289 0.93788 1.70788 1.11783 1.33018 1.39148 0.83512 0.75084 0.75041 0.76414 1.21788 1.21427 1.21116 0.94494 0.90330 0.94655 0.94161 0.91675 0.90719 0.89323 0.90064 0.93916 0.93330 0.92659 0.89932 0.92604 0.92884 0.84403 0.89353 0.92598 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.43 101.05 1.05 1.41 16 2 O -0.38 -6.03 5.02 -35.23 -0.18 -6.21 16 3 C 0.02 0.27 5.15 37.16 0.19 0.46 16 4 C 0.07 1.26 5.35 -3.83 -0.02 1.24 16 5 N -0.53 -11.03 4.58 -221.17 -1.01 -12.05 16 6 C 0.09 1.68 2.23 -68.20 -0.15 1.52 16 7 H 0.06 1.16 6.51 -51.93 -0.34 0.83 16 8 C -0.15 -2.46 7.50 37.16 0.28 -2.18 16 9 C -0.19 -3.22 3.62 -27.06 -0.10 -3.32 16 10 C 0.07 1.31 6.03 -6.55 -0.04 1.27 16 11 N -0.71 -14.49 6.41 -118.19 -0.76 -15.25 16 12 C 0.07 1.65 4.95 -4.45 -0.02 1.62 16 13 C 0.18 4.12 0.84 -69.51 -0.06 4.07 16 14 H 0.00 0.05 3.57 -51.93 -0.19 -0.14 16 15 C -0.58 -15.51 7.85 -34.44 -0.27 -15.78 16 16 H 0.06 1.54 7.70 -52.48 -0.40 1.14 16 17 C 0.02 0.48 4.90 -17.82 -0.09 0.40 16 18 N -0.91 -25.94 12.97 55.43 0.72 -25.22 16 19 Si 1.07 24.65 29.91 -169.99 -5.08 19.57 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H 0.04 0.50 7.66 -51.93 -0.40 0.10 16 24 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.03 0.43 8.14 -51.92 -0.42 0.00 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.07 1.35 4.75 -51.93 -0.25 1.10 16 28 H 0.07 1.30 5.55 -51.93 -0.29 1.01 16 29 H 0.09 1.80 7.48 -51.93 -0.39 1.42 16 30 H 0.08 1.33 4.14 -51.93 -0.22 1.11 16 31 H 0.04 0.62 8.11 -51.93 -0.42 0.20 16 32 H 0.05 0.77 7.94 -51.93 -0.41 0.36 16 33 H 0.05 0.89 7.71 -51.93 -0.40 0.49 16 34 H 0.08 1.52 2.72 -51.93 -0.14 1.38 16 35 H 0.06 0.99 7.59 -51.93 -0.39 0.59 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.34 7.09 7.63 -39.29 -0.30 6.79 16 38 H 0.09 2.32 6.43 -51.93 -0.33 1.99 16 39 H 0.06 1.29 6.77 -51.92 -0.35 0.94 16 40 H 0.27 7.55 5.76 -40.82 -0.24 7.32 16 LS Contribution 279.66 15.07 4.21 4.21 Total: -1.00 -27.56 279.66 -7.26 -34.83 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -5.94 Total: 9.41 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 0.78 Total: -9.30 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -1.05 Total: -52.52 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -0.18 Total: -6.21 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -5.08 Total: 19.57 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.56 -7.26 -34.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220563627.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.586 kcal (2) G-P(sol) polarization free energy of solvation -27.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds