Wall clock time and date at job start Mon Mar 30 2020 04:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42891 * 114.00002 * 2 1 4 4 C 1.53003 * 109.47378 * 183.59208 * 3 2 1 5 5 N 1.46893 * 109.47240 * 78.93183 * 4 3 2 6 6 C 1.48060 * 111.00619 * 289.55579 * 5 4 3 7 7 H 1.08995 * 108.79614 * 205.12551 * 6 5 4 8 8 C 1.53002 * 108.78752 * 323.45668 * 6 5 4 9 9 C 1.50745 * 112.93949 * 84.34619 * 6 5 4 10 10 C 1.54519 * 108.94258 * 92.65713 * 9 6 5 11 11 N 1.40086 * 111.50547 * 283.99110 * 10 9 6 12 12 C 1.47792 * 114.51451 * 61.47126 * 11 10 9 13 13 C 1.47756 * 110.99705 * 57.15532 * 5 4 3 14 14 H 1.09007 * 108.98752 * 313.35131 * 13 5 4 15 15 C 1.50693 * 108.99334 * 72.17965 * 13 5 4 16 16 H 1.08005 * 119.99955 * 6.26851 * 15 13 5 17 17 C 1.37877 * 119.99932 * 186.26561 * 15 13 5 18 18 N 1.31516 * 120.00167 * 5.95539 * 17 15 13 19 19 Si 1.86806 * 120.00082 * 185.95185 * 17 15 13 20 20 H 1.48501 * 109.47142 * 265.00662 * 19 17 15 21 21 H 1.48504 * 109.46734 * 25.00408 * 19 17 15 22 22 H 1.48494 * 109.47226 * 145.00465 * 19 17 15 23 23 H 1.08997 * 109.47194 * 64.93058 * 1 2 3 24 24 H 1.09002 * 109.47135 * 184.93548 * 1 2 3 25 25 H 1.09007 * 109.47232 * 304.93135 * 1 2 3 26 26 H 1.09002 * 109.47553 * 63.59168 * 3 2 1 27 27 H 1.09003 * 109.47438 * 303.59110 * 3 2 1 28 28 H 1.09004 * 109.46872 * 318.93610 * 4 3 2 29 29 H 1.09003 * 109.47529 * 198.94279 * 4 3 2 30 30 H 1.09003 * 109.47275 * 65.24393 * 8 6 5 31 31 H 1.09000 * 109.47373 * 185.24825 * 8 6 5 32 32 H 1.08997 * 109.46806 * 305.24586 * 8 6 5 33 33 H 1.09004 * 109.55780 * 212.49338 * 9 6 5 34 34 H 1.08996 * 109.55941 * 332.70762 * 9 6 5 35 35 H 1.09001 * 109.06740 * 44.51168 * 10 9 6 36 36 H 1.09001 * 109.07436 * 163.46662 * 10 9 6 37 37 H 1.00895 * 110.99673 * 294.74863 * 11 10 9 38 38 H 1.08995 * 109.71508 * 158.98530 * 12 11 10 39 39 H 1.09008 * 109.81129 * 38.25340 * 12 11 10 40 40 H 0.96995 * 119.99541 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5328 1.1858 -0.0904 5 7 3.9212 0.9172 -1.4813 6 6 3.5291 -0.4517 -1.8870 7 1 4.1830 -0.7794 -2.6950 8 6 3.7132 -1.3911 -0.6934 9 6 2.0994 -0.5384 -2.3570 10 6 2.0635 -0.3526 -3.8906 11 7 2.2385 0.9901 -4.2494 12 6 3.5317 1.5724 -3.8337 13 6 3.4191 1.9732 -2.3846 14 1 2.3728 2.1713 -2.1516 15 6 4.2179 3.2312 -2.1601 16 1 5.0745 3.2168 -1.5025 17 6 3.8551 4.4005 -2.7944 18 7 2.7471 4.4488 -3.5012 19 14 4.9375 5.9161 -2.6496 20 1 4.4395 6.7764 -1.5463 21 1 6.3341 5.5013 -2.3621 22 1 4.8992 6.6754 -3.9251 23 1 -0.3633 0.4354 -0.9308 24 1 -0.3633 -1.0239 0.0884 25 1 -0.3634 0.5885 0.8426 26 1 1.7404 1.8233 0.9204 27 1 1.6386 1.8686 -0.8561 28 1 3.8714 0.3679 0.5458 29 1 3.9909 2.1176 0.2414 30 1 3.0182 -1.1127 0.0988 31 1 3.5171 -2.4171 -1.0048 32 1 4.7356 -1.3128 -0.3238 33 1 1.6887 -1.5143 -2.0979 34 1 1.5101 0.2441 -1.8791 35 1 2.8582 -0.9480 -4.3401 36 1 1.1021 -0.7001 -4.2690 37 1 1.4666 1.5541 -3.9269 38 1 3.7527 2.4494 -4.4421 39 1 4.3244 0.8333 -3.9506 40 1 2.1850 3.6619 -3.5760 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220563627.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:59 Heat of formation + Delta-G solvation = -33.421597 kcal Electronic energy + Delta-G solvation = -20031.422089 eV Core-core repulsion = 17267.440083 eV Total energy + Delta-G solvation = -2763.982006 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.42854 -38.57698 -36.31615 -35.77459 -33.01240 -30.85048 -29.15845 -27.93944 -26.91906 -26.31947 -23.60836 -23.36283 -22.61436 -20.06907 -18.61394 -17.83099 -17.31158 -17.20615 -16.37127 -16.15671 -16.01185 -15.66952 -15.24441 -14.48016 -14.24851 -13.85400 -13.65434 -13.39842 -13.19757 -13.09866 -12.82042 -12.68790 -12.60890 -12.36261 -12.15410 -12.03442 -11.91891 -11.62648 -11.46647 -11.12239 -10.63158 -10.57888 -10.35986 -9.11802 -8.81811 -8.47630 -6.21340 1.55612 1.63510 1.81276 2.59454 2.80599 3.20816 3.26104 3.50877 3.92402 4.06898 4.17683 4.24940 4.30260 4.39243 4.45805 4.50315 4.52070 4.55761 4.66576 4.71378 4.77101 4.87253 4.89691 5.02164 5.06200 5.13770 5.15355 5.18825 5.41428 5.51568 5.62026 6.02738 6.14389 6.18408 6.32534 6.52799 6.56312 6.73093 6.89665 7.54387 8.87647 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.025405 B = 0.009488 C = 0.008653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.901435 B = 2950.300501 C = 3234.909171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.379 6.379 3 C 0.030 3.970 4 C 0.066 3.934 5 N -0.541 5.541 6 C 0.088 3.912 7 H 0.047 0.953 8 C -0.144 4.144 9 C -0.176 4.176 10 C 0.070 3.930 11 N -0.706 5.706 12 C 0.085 3.915 13 C 0.187 3.813 14 H -0.012 1.012 15 C -0.591 4.591 16 H 0.041 0.959 17 C -0.025 4.025 18 N -0.934 5.934 19 Si 1.111 2.889 20 H -0.279 1.279 21 H -0.278 1.278 22 H -0.286 1.286 23 H 0.028 0.972 24 H 0.105 0.895 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.033 0.967 28 H 0.095 0.905 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.332 0.668 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.474 -9.964 6.192 12.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.299 6.299 3 C -0.048 4.048 4 C -0.062 4.062 5 N -0.265 5.265 6 C -0.020 4.020 7 H 0.065 0.935 8 C -0.201 4.201 9 C -0.217 4.217 10 C -0.062 4.062 11 N -0.335 5.335 12 C -0.044 4.044 13 C 0.079 3.921 14 H 0.005 0.995 15 C -0.631 4.631 16 H 0.060 0.940 17 C -0.224 4.224 18 N -0.571 5.571 19 Si 0.935 3.065 20 H -0.205 1.205 21 H -0.203 1.203 22 H -0.212 1.212 23 H 0.047 0.953 24 H 0.123 0.877 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.113 0.887 29 H 0.086 0.914 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.151 0.849 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.472 -8.739 5.075 10.403 hybrid contribution -1.364 -0.975 1.198 2.061 sum -3.836 -9.713 6.273 12.182 Atomic orbital electron populations 1.22850 0.81078 1.03674 0.99749 1.87977 1.20091 1.26924 1.94865 1.23159 0.96866 0.85143 0.99626 1.22183 0.90709 1.02033 0.91279 1.62243 1.60742 1.01445 1.02086 1.21373 0.94281 0.88715 0.97605 0.93524 1.22160 1.01479 0.98051 0.98390 1.23143 0.98260 1.03234 0.97037 1.21173 1.01597 0.89407 0.93982 1.57914 1.04670 1.03983 1.66937 1.21781 0.89630 0.97228 0.95731 1.19699 0.93085 0.89517 0.89836 0.99494 1.22217 1.14875 0.95515 1.30446 0.94019 1.26897 0.98191 1.04017 0.93287 1.70868 1.12735 1.32945 1.40601 0.82973 0.74300 0.72604 0.76591 1.20510 1.20303 1.21228 0.95291 0.87668 0.93565 0.92926 0.94872 0.88660 0.91388 0.89949 0.91801 0.93411 0.90537 0.90867 0.92363 0.90509 0.84890 0.92994 0.92972 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 10.43 113.37 1.18 1.71 16 2 O -0.38 -11.20 5.02 -148.98 -0.75 -11.95 16 3 C 0.03 1.04 5.15 71.98 0.37 1.41 16 4 C 0.07 2.49 5.35 86.31 0.46 2.95 16 5 N -0.54 -22.57 4.58 -853.65 -3.91 -26.49 16 6 C 0.09 3.11 2.23 43.96 0.10 3.21 16 7 H 0.05 1.77 6.51 -2.39 -0.02 1.75 16 8 C -0.14 -4.20 7.50 71.98 0.54 -3.66 16 9 C -0.18 -5.72 3.62 30.38 0.11 -5.61 16 10 C 0.07 2.36 6.03 88.05 0.53 2.89 16 11 N -0.71 -28.86 6.41 -527.83 -3.38 -32.24 16 12 C 0.09 4.03 4.95 85.41 0.42 4.45 16 13 C 0.19 8.94 0.84 43.28 0.04 8.98 16 14 H -0.01 -0.61 3.57 -2.38 -0.01 -0.62 16 15 C -0.59 -32.19 7.85 25.60 0.20 -31.99 16 16 H 0.04 2.34 7.70 -2.91 -0.02 2.32 16 17 C -0.02 -1.36 4.90 84.65 0.41 -0.94 16 18 N -0.93 -54.38 12.97 21.45 0.28 -54.10 16 19 Si 1.11 50.13 29.91 68.60 2.05 52.18 16 20 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 23 H 0.03 0.73 7.66 -2.39 -0.02 0.71 16 24 H 0.10 1.94 8.14 -2.39 -0.02 1.93 16 25 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 26 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.03 1.39 4.75 -2.39 -0.01 1.38 16 28 H 0.10 3.15 5.55 -2.38 -0.01 3.14 16 29 H 0.07 2.80 7.48 -2.39 -0.02 2.78 16 30 H 0.08 2.42 4.14 -2.39 -0.01 2.41 16 31 H 0.06 1.61 8.11 -2.39 -0.02 1.59 16 32 H 0.05 1.40 7.94 -2.39 -0.02 1.38 16 33 H 0.08 2.18 7.71 -2.39 -0.02 2.16 16 34 H 0.07 2.59 2.72 -2.39 -0.01 2.58 16 35 H 0.06 1.96 7.59 -2.39 -0.02 1.94 16 36 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.33 14.13 7.63 -89.70 -0.68 13.45 16 38 H 0.05 2.83 6.43 -2.39 -0.02 2.81 16 39 H 0.05 2.45 6.77 -2.38 -0.02 2.44 16 40 H 0.26 15.21 5.76 -92.71 -0.53 14.68 16 Total: -1.00 -59.43 279.66 -0.75 -60.18 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: 0.59 Total: 29.02 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: 4.37 Total: -16.60 kcal Atomic # 7 Polarization: -105.81 SS G_CDS: -7.02 Total: -112.83 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: -0.75 Total: -11.95 kcal Atomic # 14 Polarization: 50.13 SS G_CDS: 2.05 Total: 52.18 kcal Total: -59.43 -0.75 -60.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220563627.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.760 kcal (2) G-P(sol) polarization free energy of solvation -59.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds