Wall clock time and date at job start Mon Mar 30 2020 04:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 114.00170 * 2 1 4 4 C 1.52997 * 109.46886 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.47031 * 60.01906 * 4 3 2 6 6 C 1.48069 * 110.99826 * 204.12156 * 5 4 3 7 7 H 1.09002 * 108.79197 * 154.75607 * 6 5 4 8 8 C 1.53002 * 108.69875 * 36.47540 * 6 5 4 9 9 C 1.50748 * 112.94133 * 275.64875 * 6 5 4 10 10 C 1.54513 * 108.94613 * 267.35212 * 9 6 5 11 11 N 1.40081 * 111.50528 * 76.00904 * 10 9 6 12 12 C 1.47687 * 114.57072 * 298.54512 * 11 10 9 13 13 C 1.47745 * 111.00020 * 76.52646 * 5 4 3 14 14 H 1.09002 * 108.93023 * 46.60067 * 13 5 4 15 15 C 1.50707 * 108.99144 * 287.81137 * 13 5 4 16 16 H 1.07991 * 119.99773 * 352.52359 * 15 13 5 17 17 C 1.37876 * 119.99736 * 172.79958 * 15 13 5 18 18 N 1.31520 * 119.99753 * 180.02562 * 17 15 13 19 19 Si 1.86795 * 120.00406 * 359.97438 * 17 15 13 20 20 H 1.48504 * 109.46853 * 90.00197 * 19 17 15 21 21 H 1.48502 * 109.47551 * 210.00175 * 19 17 15 22 22 H 1.48507 * 109.47337 * 330.00469 * 19 17 15 23 23 H 1.09003 * 109.46744 * 59.99909 * 1 2 3 24 24 H 1.08998 * 109.47236 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47038 * 300.00042 * 1 2 3 26 26 H 1.08998 * 109.46671 * 59.99911 * 3 2 1 27 27 H 1.09000 * 109.46974 * 300.00081 * 3 2 1 28 28 H 1.08995 * 109.47447 * 300.01519 * 4 3 2 29 29 H 1.09005 * 109.46979 * 180.02562 * 4 3 2 30 30 H 1.08994 * 109.47353 * 288.01317 * 8 6 5 31 31 H 1.08999 * 109.46975 * 48.01954 * 8 6 5 32 32 H 1.09002 * 109.46680 * 168.01943 * 8 6 5 33 33 H 1.09002 * 109.56033 * 147.51606 * 9 6 5 34 34 H 1.09003 * 109.64725 * 27.24530 * 9 6 5 35 35 H 1.09001 * 109.07575 * 315.48518 * 10 9 6 36 36 H 1.09004 * 109.07388 * 196.52433 * 10 9 6 37 37 H 1.00905 * 111.00235 * 65.24274 * 11 10 9 38 38 H 1.08999 * 109.73302 * 321.66856 * 12 11 10 39 39 H 1.09003 * 109.73513 * 200.97146 * 12 11 10 40 40 H 0.97000 * 120.00080 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9694 0.4556 -1.1988 6 6 5.2896 -0.1798 -0.9849 7 1 5.3796 -1.0361 -1.6534 8 6 5.3675 -0.6741 0.4610 9 6 6.4416 0.7584 -1.2399 10 6 6.8959 0.6073 -2.7090 11 7 6.0108 1.2441 -3.5883 12 6 4.6341 0.7097 -3.5678 13 6 3.9117 1.3216 -2.3944 14 1 4.3693 2.2822 -2.1578 15 6 2.4691 1.5450 -2.7689 16 1 1.6884 0.9992 -2.2602 17 6 2.1465 2.4422 -3.7649 18 7 0.8875 2.6376 -4.0914 19 14 3.4973 3.3813 -4.6496 20 1 3.9441 2.6064 -5.8351 21 1 2.9770 4.7011 -5.0884 22 1 4.6448 3.5829 -3.7288 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.6886 1.8463 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.8567 0.6435 0.8907 29 1 3.9789 2.1803 0.0011 30 1 5.4627 0.1794 1.1322 31 1 4.4614 -1.2288 0.7047 32 1 6.2342 -1.3252 0.5761 33 1 7.2687 0.5100 -0.5748 34 1 6.1244 1.7856 -1.0599 35 1 6.9458 -0.4524 -2.9592 36 1 7.8874 1.0459 -2.8221 37 1 6.0132 2.2427 -3.4438 38 1 4.6617 -0.3744 -3.4585 39 1 4.1229 0.9741 -4.4935 40 1 0.6605 3.2685 -4.7924 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220563702.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:03 Heat of formation + Delta-G solvation = -10.484842 kcal Electronic energy + Delta-G solvation = -19641.354308 eV Core-core repulsion = 16878.366915 eV Total energy + Delta-G solvation = -2762.987393 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.45335 -36.93002 -34.90047 -33.70831 -31.62588 -29.60364 -27.83276 -26.81842 -25.52173 -24.18476 -21.94466 -21.67678 -20.90514 -18.22761 -17.13771 -16.09556 -15.51650 -15.43265 -14.85364 -14.54880 -14.21372 -13.95344 -13.56968 -13.29759 -12.93723 -12.65278 -12.46882 -11.85241 -11.73519 -11.41025 -11.27659 -11.15103 -10.97763 -10.88978 -10.59226 -10.49885 -10.19353 -10.03159 -9.81930 -9.48554 -9.25063 -8.71996 -8.41624 -7.67486 -7.17205 -6.08633 -4.05071 3.27693 3.34009 3.38914 4.36710 4.60757 4.71652 4.92422 5.13353 5.19959 5.40240 5.52989 5.68535 5.75859 5.85277 5.87039 5.98542 6.06171 6.08894 6.11978 6.15696 6.25551 6.30949 6.35251 6.37199 6.44806 6.50387 6.56912 6.66231 6.70816 7.07642 7.14423 7.54896 7.82969 7.92193 8.02942 8.12632 8.19731 8.68447 9.03986 9.52457 11.01961 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.016000 B = 0.014884 C = 0.008371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.578230 B = 1880.769551 C = 3344.142440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.373 6.373 3 C 0.045 3.955 4 C 0.066 3.934 5 N -0.513 5.513 6 C 0.082 3.918 7 H 0.072 0.928 8 C -0.148 4.148 9 C -0.191 4.191 10 C 0.081 3.919 11 N -0.715 5.715 12 C 0.059 3.941 13 C 0.162 3.838 14 H -0.001 1.001 15 C -0.504 4.504 16 H 0.100 0.900 17 C 0.067 3.933 18 N -0.897 5.897 19 Si 0.877 3.123 20 H -0.272 1.272 21 H -0.297 1.297 22 H -0.268 1.268 23 H 0.046 0.954 24 H 0.072 0.928 25 H 0.023 0.977 26 H 0.019 0.981 27 H 0.108 0.892 28 H 0.071 0.929 29 H 0.031 0.969 30 H 0.050 0.950 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.338 0.662 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.214 -2.818 7.097 10.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.292 6.292 3 C -0.031 4.031 4 C -0.062 4.062 5 N -0.238 5.238 6 C -0.027 4.027 7 H 0.090 0.910 8 C -0.206 4.206 9 C -0.233 4.233 10 C -0.051 4.051 11 N -0.346 5.346 12 C -0.069 4.069 13 C 0.054 3.946 14 H 0.016 0.984 15 C -0.542 4.542 16 H 0.117 0.883 17 C -0.134 4.134 18 N -0.535 5.535 19 Si 0.707 3.293 20 H -0.198 1.198 21 H -0.224 1.224 22 H -0.194 1.194 23 H 0.065 0.935 24 H 0.090 0.910 25 H 0.042 0.958 26 H 0.037 0.963 27 H 0.126 0.874 28 H 0.090 0.910 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.160 0.840 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.061 -3.660 6.376 10.193 hybrid contribution 0.723 1.907 0.449 2.089 sum 7.784 -1.752 6.825 10.499 Atomic orbital electron populations 1.22581 0.82895 1.01265 0.99455 1.87873 1.17885 1.28150 1.95245 1.23169 0.93291 0.85276 1.01388 1.22061 0.94460 0.95927 0.93797 1.62071 1.22899 1.36040 1.02808 1.21497 0.87991 0.96825 0.96363 0.90997 1.22093 1.01622 1.00475 0.96376 1.23056 0.99460 1.00860 0.99896 1.20933 0.95534 0.99704 0.88909 1.58071 1.11929 1.09005 1.55636 1.22402 0.84985 0.99884 0.99584 1.20221 0.98081 0.89473 0.86828 0.98411 1.21236 0.90865 1.23164 1.18977 0.88272 1.24980 0.95197 0.96607 0.96651 1.69874 1.16570 1.36011 1.31090 0.87049 0.82255 0.79095 0.80920 1.19751 1.22423 1.19372 0.93527 0.90982 0.95831 0.96259 0.87443 0.91042 0.95049 0.93119 0.91426 0.93198 0.92003 0.92351 0.91779 0.92354 0.84040 0.90956 0.89990 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 11.01 101.05 1.11 1.74 16 2 O -0.37 -7.78 10.20 -35.23 -0.36 -8.14 16 3 C 0.05 0.92 5.32 37.16 0.20 1.12 16 4 C 0.07 1.26 4.91 -3.82 -0.02 1.25 16 5 N -0.51 -10.48 4.24 -221.15 -0.94 -11.42 16 6 C 0.08 1.39 2.32 -68.20 -0.16 1.23 16 7 H 0.07 1.27 6.53 -51.93 -0.34 0.93 16 8 C -0.15 -2.15 7.49 37.16 0.28 -1.87 16 9 C -0.19 -2.98 5.12 -27.07 -0.14 -3.12 16 10 C 0.08 1.29 6.03 -6.55 -0.04 1.25 16 11 N -0.72 -13.54 6.29 -118.27 -0.74 -14.29 16 12 C 0.06 1.27 4.70 -4.51 -0.02 1.25 16 13 C 0.16 3.67 0.90 -69.51 -0.06 3.60 16 14 H 0.00 -0.03 5.00 -51.93 -0.26 -0.29 16 15 C -0.50 -13.30 6.91 -34.44 -0.24 -13.54 16 16 H 0.10 2.86 5.67 -52.49 -0.30 2.57 16 17 C 0.07 1.84 5.33 -17.82 -0.09 1.75 16 18 N -0.90 -26.16 13.96 55.43 0.77 -25.39 16 19 Si 0.88 21.02 24.30 -169.99 -4.13 16.89 16 20 H -0.27 -6.53 6.96 56.52 0.39 -6.13 16 21 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.27 -6.04 4.96 56.52 0.28 -5.76 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.11 2.58 4.63 -51.93 -0.24 2.34 16 28 H 0.07 1.23 4.80 -51.93 -0.25 0.99 16 29 H 0.03 0.61 7.74 -51.93 -0.40 0.20 16 30 H 0.05 0.70 6.77 -51.93 -0.35 0.35 16 31 H 0.07 1.05 7.81 -51.93 -0.41 0.65 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.83 7.73 -51.93 -0.40 0.43 16 34 H 0.06 1.01 7.10 -51.93 -0.37 0.64 16 35 H 0.06 0.99 7.60 -51.93 -0.39 0.59 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.34 6.60 6.19 -39.29 -0.24 6.36 16 38 H 0.07 1.54 6.77 -51.93 -0.35 1.19 16 39 H 0.08 1.94 4.97 -51.93 -0.26 1.68 16 40 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 LS Contribution 284.53 15.07 4.29 4.29 Total: -1.00 -28.27 284.53 -6.66 -34.92 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -6.36 Total: 8.48 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: 0.82 Total: -5.35 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: -0.91 Total: -51.09 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: -0.36 Total: -8.14 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.13 Total: 16.89 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.27 -6.66 -34.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220563702.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.440 kcal (2) G-P(sol) polarization free energy of solvation -28.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds