Wall clock time and date at job start Mon Mar 30 2020 04:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 114.00170 * 2 1 4 4 C 1.52997 * 109.46886 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.47031 * 60.01906 * 4 3 2 6 6 C 1.48069 * 110.99826 * 204.12156 * 5 4 3 7 7 H 1.09002 * 108.79197 * 154.75607 * 6 5 4 8 8 C 1.53002 * 108.69875 * 36.47540 * 6 5 4 9 9 C 1.50748 * 112.94133 * 275.64875 * 6 5 4 10 10 C 1.54513 * 108.94613 * 267.35212 * 9 6 5 11 11 N 1.40081 * 111.50528 * 76.00904 * 10 9 6 12 12 C 1.47687 * 114.57072 * 298.54512 * 11 10 9 13 13 C 1.47745 * 111.00020 * 76.52646 * 5 4 3 14 14 H 1.09002 * 108.93023 * 46.60067 * 13 5 4 15 15 C 1.50707 * 108.99144 * 287.81137 * 13 5 4 16 16 H 1.07991 * 119.99773 * 352.52359 * 15 13 5 17 17 C 1.37876 * 119.99736 * 172.79958 * 15 13 5 18 18 N 1.31520 * 119.99753 * 180.02562 * 17 15 13 19 19 Si 1.86795 * 120.00406 * 359.97438 * 17 15 13 20 20 H 1.48504 * 109.46853 * 90.00197 * 19 17 15 21 21 H 1.48502 * 109.47551 * 210.00175 * 19 17 15 22 22 H 1.48507 * 109.47337 * 330.00469 * 19 17 15 23 23 H 1.09003 * 109.46744 * 59.99909 * 1 2 3 24 24 H 1.08998 * 109.47236 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47038 * 300.00042 * 1 2 3 26 26 H 1.08998 * 109.46671 * 59.99911 * 3 2 1 27 27 H 1.09000 * 109.46974 * 300.00081 * 3 2 1 28 28 H 1.08995 * 109.47447 * 300.01519 * 4 3 2 29 29 H 1.09005 * 109.46979 * 180.02562 * 4 3 2 30 30 H 1.08994 * 109.47353 * 288.01317 * 8 6 5 31 31 H 1.08999 * 109.46975 * 48.01954 * 8 6 5 32 32 H 1.09002 * 109.46680 * 168.01943 * 8 6 5 33 33 H 1.09002 * 109.56033 * 147.51606 * 9 6 5 34 34 H 1.09003 * 109.64725 * 27.24530 * 9 6 5 35 35 H 1.09001 * 109.07575 * 315.48518 * 10 9 6 36 36 H 1.09004 * 109.07388 * 196.52433 * 10 9 6 37 37 H 1.00905 * 111.00235 * 65.24274 * 11 10 9 38 38 H 1.08999 * 109.73302 * 321.66856 * 12 11 10 39 39 H 1.09003 * 109.73513 * 200.97146 * 12 11 10 40 40 H 0.97000 * 120.00080 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9694 0.4556 -1.1988 6 6 5.2896 -0.1798 -0.9849 7 1 5.3796 -1.0361 -1.6534 8 6 5.3675 -0.6741 0.4610 9 6 6.4416 0.7584 -1.2399 10 6 6.8959 0.6073 -2.7090 11 7 6.0108 1.2441 -3.5883 12 6 4.6341 0.7097 -3.5678 13 6 3.9117 1.3216 -2.3944 14 1 4.3693 2.2822 -2.1578 15 6 2.4691 1.5450 -2.7689 16 1 1.6884 0.9992 -2.2602 17 6 2.1465 2.4422 -3.7649 18 7 0.8875 2.6376 -4.0914 19 14 3.4973 3.3813 -4.6496 20 1 3.9441 2.6064 -5.8351 21 1 2.9770 4.7011 -5.0884 22 1 4.6448 3.5829 -3.7288 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.6886 1.8463 0.8900 27 1 1.6887 1.8463 -0.8900 28 1 3.8567 0.6435 0.8907 29 1 3.9789 2.1803 0.0011 30 1 5.4627 0.1794 1.1322 31 1 4.4614 -1.2288 0.7047 32 1 6.2342 -1.3252 0.5761 33 1 7.2687 0.5100 -0.5748 34 1 6.1244 1.7856 -1.0599 35 1 6.9458 -0.4524 -2.9592 36 1 7.8874 1.0459 -2.8221 37 1 6.0132 2.2427 -3.4438 38 1 4.6617 -0.3744 -3.4585 39 1 4.1229 0.9741 -4.4935 40 1 0.6605 3.2685 -4.7924 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220563702.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:02 Heat of formation + Delta-G solvation = -33.433527 kcal Electronic energy + Delta-G solvation = -19642.349438 eV Core-core repulsion = 16878.366915 eV Total energy + Delta-G solvation = -2763.982523 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.96670 -38.50324 -36.37547 -35.47784 -33.44346 -31.19244 -29.15329 -28.52306 -27.08405 -25.82680 -23.47809 -23.19054 -22.51264 -19.74990 -19.04518 -17.72503 -17.08259 -17.00067 -16.41875 -16.17555 -15.88810 -15.47030 -15.10135 -14.80569 -14.46762 -14.24395 -14.00953 -13.48621 -13.27551 -13.13005 -12.71951 -12.57319 -12.41339 -12.37157 -12.28065 -11.92582 -11.86127 -11.69548 -11.33301 -11.16459 -11.08041 -10.75266 -10.14549 -9.20160 -8.75785 -8.20095 -6.18674 1.34563 1.39744 1.43415 2.35592 3.06107 3.10660 3.21159 3.45827 3.87093 4.07577 4.24580 4.38069 4.39157 4.47679 4.52828 4.55194 4.61549 4.64003 4.69376 4.75724 4.83107 4.83394 4.87668 4.91925 4.97951 5.03713 5.12408 5.30232 5.36995 5.40580 5.43173 5.68083 6.17104 6.24682 6.42923 6.59685 6.61505 6.85024 6.90507 7.41984 8.93532 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.016000 B = 0.014884 C = 0.008371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.578230 B = 1880.769551 C = 3344.142440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.390 6.390 3 C 0.048 3.952 4 C 0.068 3.932 5 N -0.532 5.532 6 C 0.077 3.923 7 H 0.065 0.935 8 C -0.141 4.141 9 C -0.181 4.181 10 C 0.075 3.925 11 N -0.713 5.713 12 C 0.069 3.931 13 C 0.174 3.826 14 H -0.010 1.010 15 C -0.494 4.494 16 H 0.065 0.935 17 C 0.014 3.986 18 N -0.945 5.945 19 Si 0.935 3.065 20 H -0.271 1.271 21 H -0.304 1.304 22 H -0.244 1.244 23 H 0.015 0.985 24 H 0.094 0.906 25 H 0.049 0.951 26 H 0.042 0.958 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.031 0.969 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.336 0.664 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.031 -3.350 8.546 13.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.309 6.309 3 C -0.028 4.028 4 C -0.060 4.060 5 N -0.258 5.258 6 C -0.031 4.031 7 H 0.083 0.917 8 C -0.198 4.198 9 C -0.222 4.222 10 C -0.056 4.056 11 N -0.343 5.343 12 C -0.060 4.060 13 C 0.065 3.935 14 H 0.008 0.992 15 C -0.533 4.533 16 H 0.083 0.917 17 C -0.183 4.183 18 N -0.586 5.586 19 Si 0.762 3.238 20 H -0.197 1.197 21 H -0.232 1.232 22 H -0.169 1.169 23 H 0.034 0.966 24 H 0.113 0.887 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.082 0.918 28 H 0.115 0.885 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.112 0.888 34 H 0.061 0.939 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.157 0.843 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.913 -4.211 7.850 13.327 hybrid contribution -0.208 1.974 0.086 1.987 sum 9.705 -2.236 7.936 12.735 Atomic orbital electron populations 1.22687 0.81576 1.02717 0.99173 1.87828 1.19425 1.28361 1.95262 1.23023 0.94481 0.85002 1.00313 1.22098 0.93372 0.96214 0.94319 1.61917 1.25762 1.35645 1.02431 1.21614 0.86786 0.96571 0.98110 0.91703 1.22019 1.02256 1.01084 0.94428 1.22935 0.99672 0.99347 1.00295 1.21109 0.95862 1.00129 0.88515 1.58042 1.10417 1.08910 1.56968 1.22069 0.86493 0.99749 0.97670 1.19982 0.95337 0.89777 0.88401 0.99230 1.21466 0.92469 1.21668 1.17682 0.91696 1.25677 0.96973 0.97906 0.97761 1.70024 1.18737 1.37521 1.32336 0.86107 0.80397 0.77181 0.80090 1.19684 1.23218 1.16874 0.96577 0.88717 0.93246 0.94009 0.91779 0.88506 0.95113 0.92179 0.92791 0.90390 0.88799 0.93910 0.91072 0.89621 0.84328 0.90949 0.92509 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.25 11.01 113.37 1.25 2.50 16 2 O -0.39 -16.27 10.20 -148.98 -1.52 -17.79 16 3 C 0.05 1.99 5.32 71.98 0.38 2.37 16 4 C 0.07 2.52 4.91 86.30 0.42 2.95 16 5 N -0.53 -21.19 4.24 -853.60 -3.62 -24.81 16 6 C 0.08 2.40 2.32 43.96 0.10 2.50 16 7 H 0.06 2.13 6.53 -2.39 -0.02 2.11 16 8 C -0.14 -3.54 7.49 71.98 0.54 -3.00 16 9 C -0.18 -4.95 5.12 30.38 0.16 -4.80 16 10 C 0.08 2.09 6.03 88.05 0.53 2.62 16 11 N -0.71 -25.19 6.29 -528.10 -3.32 -28.52 16 12 C 0.07 2.89 4.70 85.43 0.40 3.30 16 13 C 0.17 7.81 0.90 43.29 0.04 7.85 16 14 H -0.01 -0.44 5.00 -2.39 -0.01 -0.46 16 15 C -0.49 -26.92 6.91 25.60 0.18 -26.74 16 16 H 0.07 3.95 5.67 -2.92 -0.02 3.93 16 17 C 0.01 0.78 5.33 84.65 0.45 1.23 16 18 N -0.94 -57.68 13.96 21.45 0.30 -57.38 16 19 Si 0.93 44.16 24.30 68.60 1.67 45.82 16 20 H -0.27 -12.70 6.96 99.48 0.69 -12.01 16 21 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 22 H -0.24 -10.45 4.96 99.48 0.49 -9.96 16 23 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 25 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.06 3.21 4.63 -2.39 -0.01 3.20 16 28 H 0.10 3.09 4.80 -2.39 -0.01 3.08 16 29 H 0.03 1.14 7.74 -2.38 -0.02 1.13 16 30 H 0.06 1.41 6.77 -2.39 -0.02 1.39 16 31 H 0.05 1.52 7.81 -2.39 -0.02 1.50 16 32 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.09 2.01 7.73 -2.39 -0.02 1.99 16 34 H 0.04 1.33 7.10 -2.39 -0.02 1.31 16 35 H 0.07 1.92 7.60 -2.39 -0.02 1.91 16 36 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.34 12.17 6.19 -89.69 -0.55 11.61 16 38 H 0.07 3.02 6.77 -2.39 -0.02 3.00 16 39 H 0.06 2.68 4.97 -2.39 -0.01 2.67 16 40 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -63.25 284.53 -1.79 -65.04 By element: Atomic # 1 Polarization: 26.61 SS G_CDS: 0.25 Total: 26.86 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: 4.45 Total: -9.22 kcal Atomic # 7 Polarization: -104.07 SS G_CDS: -6.64 Total: -110.71 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -1.52 Total: -17.79 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.67 Total: 45.82 kcal Total: -63.25 -1.79 -65.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220563702.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.609 kcal (2) G-P(sol) polarization free energy of solvation -63.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds