Wall clock time and date at job start Mon Mar 30 2020 04:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00005 * 2 1 4 4 C 1.53005 * 109.47086 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.46984 * 67.39890 * 4 3 2 6 6 C 1.40015 * 110.99936 * 295.00244 * 5 4 3 7 7 H 1.09001 * 108.95766 * 67.51172 * 6 5 4 8 8 C 1.50700 * 108.95996 * 308.76687 * 6 5 4 9 9 H 1.08007 * 119.99723 * 354.35726 * 8 6 5 10 10 C 1.37876 * 120.00319 * 174.35508 * 8 6 5 11 11 N 1.31510 * 120.00276 * 180.02562 * 10 8 6 12 12 Si 1.86804 * 119.99760 * 359.97438 * 10 8 6 13 13 H 1.48497 * 109.47270 * 90.00022 * 12 10 8 14 14 H 1.48506 * 109.46916 * 210.00159 * 12 10 8 15 15 H 1.48504 * 109.46914 * 329.99782 * 12 10 8 16 16 C 1.54196 * 112.08415 * 188.09239 * 6 5 4 17 17 N 1.44568 * 108.85326 * 281.18184 * 16 6 5 18 18 C 1.48060 * 113.85543 * 94.22827 * 17 16 6 19 19 C 1.53698 * 112.47015 * 318.32335 * 18 17 16 20 20 C 1.47912 * 110.99874 * 62.97245 * 5 4 3 21 21 H 1.09003 * 109.63147 * 273.69560 * 20 5 4 22 22 C 1.52995 * 109.63296 * 34.08683 * 20 5 4 23 23 H 1.09007 * 109.47041 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47267 * 300.00165 * 1 2 3 25 25 H 1.08998 * 109.47138 * 60.00221 * 1 2 3 26 26 H 1.09003 * 109.47084 * 60.00134 * 3 2 1 27 27 H 1.08998 * 109.47169 * 299.99945 * 3 2 1 28 28 H 1.08996 * 109.47432 * 307.40003 * 4 3 2 29 29 H 1.08993 * 109.47016 * 187.39827 * 4 3 2 30 30 H 0.97001 * 120.00109 * 179.97438 * 11 10 8 31 31 H 1.09005 * 109.57562 * 40.99497 * 16 6 5 32 32 H 1.09009 * 109.57432 * 161.24146 * 16 6 5 33 33 H 1.00899 * 110.99888 * 328.11462 * 17 16 6 34 34 H 1.09005 * 108.88275 * 79.08789 * 18 17 16 35 35 H 1.08995 * 108.88404 * 197.64702 * 18 17 16 36 36 H 1.09010 * 108.95277 * 197.87326 * 19 18 17 37 37 H 1.08999 * 108.95600 * 79.22935 * 19 18 17 38 38 H 1.09000 * 109.46798 * 60.00402 * 22 20 5 39 39 H 1.09004 * 109.46737 * 179.97438 * 22 20 5 40 40 H 1.08996 * 109.47276 * 300.00132 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9821 0.6151 -1.2778 6 6 3.5233 -0.6991 -1.4292 7 1 2.4387 -0.6853 -1.5370 8 6 3.8823 -1.4881 -0.1964 9 1 4.4898 -1.0380 0.5749 10 6 3.4353 -2.7845 -0.0532 11 7 3.7482 -3.4729 1.0228 12 14 2.3839 -3.5626 -1.3869 13 1 3.2604 -4.2376 -2.3774 14 1 1.4677 -4.5592 -0.7764 15 1 1.5877 -2.5095 -2.0668 16 6 4.1389 -1.3895 -2.6629 17 7 3.4446 -0.9359 -3.8470 18 6 4.0971 0.2090 -4.5221 19 6 4.6135 1.2609 -3.5275 20 6 3.6371 1.5081 -2.4052 21 1 2.6233 1.2950 -2.7443 22 6 3.7318 2.9667 -1.9533 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8481 0.5339 0.8172 29 1 3.9781 2.1718 0.1330 30 1 3.4333 -4.3848 1.1237 31 1 5.1951 -1.1307 -2.7372 32 1 4.0336 -2.4702 -2.5670 33 1 2.4775 -0.7322 -3.6435 34 1 4.9361 -0.1607 -5.1118 35 1 3.3774 0.6811 -5.1907 36 1 4.7859 2.1966 -4.0595 37 1 5.5577 0.9161 -3.1059 38 1 4.7482 3.1790 -1.6215 39 1 3.4775 3.6224 -2.7862 40 1 3.0378 3.1380 -1.1305 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220563763.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:06 Heat of formation + Delta-G solvation = -7.760611 kcal Electronic energy + Delta-G solvation = -20001.943396 eV Core-core repulsion = 17239.074134 eV Total energy + Delta-G solvation = -2762.869262 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.67374 -36.97634 -34.72047 -33.69035 -31.57701 -29.41150 -28.11597 -26.65717 -25.63875 -24.27768 -22.27839 -21.86026 -19.95688 -18.69601 -17.03017 -16.11973 -15.70456 -15.50364 -15.05089 -14.44967 -14.37635 -13.86037 -13.61065 -13.22044 -12.78741 -12.29905 -12.18157 -11.97464 -11.74516 -11.63840 -11.60521 -11.14273 -11.06830 -10.93248 -10.46698 -10.35677 -10.18443 -10.04212 -9.78718 -9.41343 -9.06867 -8.95852 -8.42451 -7.54015 -7.06063 -5.88119 -3.82652 3.44201 3.51888 3.57398 4.39494 4.58825 4.75409 4.94319 5.25055 5.32236 5.44156 5.52619 5.57908 5.62214 5.69727 5.75168 5.77318 5.84567 5.92728 5.95710 6.01350 6.08625 6.15496 6.26183 6.36170 6.38067 6.51069 6.57233 6.76324 6.87997 6.99893 7.45387 7.59449 7.82245 7.89446 8.08303 8.22339 8.32086 8.91064 9.14879 9.76597 11.24539 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.019953 B = 0.013218 C = 0.010174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.942028 B = 2117.742931 C = 2751.525599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.337 6.337 3 C 0.028 3.972 4 C 0.062 3.938 5 N -0.523 5.523 6 C 0.160 3.840 7 H 0.025 0.975 8 C -0.479 4.479 9 H 0.077 0.923 10 C 0.074 3.926 11 N -0.907 5.907 12 Si 0.883 3.117 13 H -0.281 1.281 14 H -0.303 1.303 15 H -0.264 1.264 16 C 0.056 3.944 17 N -0.707 5.707 18 C 0.065 3.935 19 C -0.144 4.144 20 C 0.082 3.918 21 H 0.031 0.969 22 C -0.151 4.151 23 H 0.078 0.922 24 H 0.031 0.969 25 H 0.027 0.973 26 H 0.036 0.964 27 H 0.035 0.965 28 H 0.106 0.894 29 H 0.071 0.929 30 H 0.259 0.741 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.333 0.667 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.050 0.950 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.541 11.426 -6.293 13.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.254 6.254 3 C -0.051 4.051 4 C -0.065 4.065 5 N -0.246 5.246 6 C 0.049 3.951 7 H 0.042 0.958 8 C -0.518 4.518 9 H 0.095 0.905 10 C -0.127 4.127 11 N -0.547 5.547 12 Si 0.714 3.286 13 H -0.209 1.209 14 H -0.231 1.231 15 H -0.189 1.189 16 C -0.073 4.073 17 N -0.336 5.336 18 C -0.064 4.064 19 C -0.184 4.184 20 C -0.026 4.026 21 H 0.049 0.951 22 C -0.208 4.208 23 H 0.097 0.903 24 H 0.050 0.950 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.124 0.876 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.151 0.849 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.635 10.584 -6.612 12.754 hybrid contribution -1.958 0.402 -0.086 2.000 sum -4.593 10.985 -6.697 13.661 Atomic orbital electron populations 1.22689 0.84153 1.02051 0.98393 1.88532 1.16769 1.25628 1.94495 1.23370 0.97552 0.85843 0.98317 1.22346 0.89471 0.99828 0.94903 1.59367 1.62316 1.02726 1.00203 1.19442 0.94443 0.85359 0.95812 0.95810 1.20842 1.31529 0.96939 1.02484 0.90504 1.24827 0.95488 0.97108 0.95244 1.69889 1.46706 1.10519 1.27561 0.86948 0.80728 0.79009 0.81935 1.20860 1.23128 1.18895 1.22440 0.98240 0.99264 0.87334 1.59755 1.06209 1.35988 1.31688 1.22266 0.98512 0.89959 0.95710 1.22034 1.00878 0.98948 0.96510 1.21265 0.96413 0.92494 0.92398 0.95111 1.22113 1.02336 0.95455 1.00884 0.90294 0.95049 0.95488 0.94603 0.94734 0.87641 0.91083 0.93097 0.91616 0.91329 0.84944 0.91895 0.92723 0.92393 0.90576 0.91894 0.93123 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 11.01 101.05 1.11 1.52 16 2 O -0.34 -7.04 6.90 -35.23 -0.24 -7.28 16 3 C 0.03 0.49 5.19 37.16 0.19 0.68 16 4 C 0.06 1.17 4.99 -3.82 -0.02 1.15 16 5 N -0.52 -10.42 4.05 -224.92 -0.91 -11.33 16 6 C 0.16 3.68 0.59 -71.80 -0.04 3.64 16 7 H 0.02 0.60 3.80 -51.93 -0.20 0.40 16 8 C -0.48 -13.13 7.23 -34.44 -0.25 -13.38 16 9 H 0.08 2.30 6.44 -52.48 -0.34 1.97 16 10 C 0.07 2.13 5.42 -17.82 -0.10 2.03 16 11 N -0.91 -27.96 13.96 55.43 0.77 -27.19 16 12 Si 0.88 22.75 24.57 -169.99 -4.18 18.57 16 13 H -0.28 -7.26 6.79 56.52 0.38 -6.87 16 14 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 15 H -0.26 -6.54 6.42 56.52 0.36 -6.18 16 16 C 0.06 1.27 4.87 -4.45 -0.02 1.24 16 17 N -0.71 -13.72 6.53 -113.50 -0.74 -14.46 16 18 C 0.07 1.03 6.50 -2.82 -0.02 1.01 16 19 C -0.14 -2.21 4.92 -27.47 -0.14 -2.35 16 20 C 0.08 1.35 1.60 -68.26 -0.11 1.24 16 21 H 0.03 0.54 6.69 -51.93 -0.35 0.20 16 22 C -0.15 -2.00 7.59 37.16 0.28 -1.72 16 23 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 24 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.03 0.56 5.73 -51.93 -0.30 0.27 16 28 H 0.11 2.34 5.69 -51.93 -0.30 2.04 16 29 H 0.07 1.13 6.14 -51.93 -0.32 0.81 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.07 1.48 6.93 -51.93 -0.36 1.12 16 32 H 0.07 1.72 3.99 -51.92 -0.21 1.51 16 33 H 0.33 6.52 7.51 -39.29 -0.30 6.23 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.75 7.72 -51.92 -0.40 0.35 16 37 H 0.08 1.31 7.23 -51.93 -0.38 0.93 16 38 H 0.06 0.83 8.02 -51.93 -0.42 0.41 16 39 H 0.05 0.58 8.11 -51.93 -0.42 0.16 16 40 H 0.06 0.76 5.02 -51.93 -0.26 0.50 16 LS Contribution 282.39 15.07 4.26 4.26 Total: -1.00 -30.44 282.39 -6.40 -36.84 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -6.26 Total: 5.53 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 0.90 Total: -4.93 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: -0.88 Total: -52.98 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -0.24 Total: -7.28 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.18 Total: 18.57 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.44 -6.40 -36.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220563763.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.083 kcal (2) G-P(sol) polarization free energy of solvation -30.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds