Wall clock time and date at job start Mon Mar 30 2020 04:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00005 * 2 1 4 4 C 1.53005 * 109.47086 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.46984 * 67.39890 * 4 3 2 6 6 C 1.40015 * 110.99936 * 295.00244 * 5 4 3 7 7 H 1.09001 * 108.95766 * 67.51172 * 6 5 4 8 8 C 1.50700 * 108.95996 * 308.76687 * 6 5 4 9 9 H 1.08007 * 119.99723 * 354.35726 * 8 6 5 10 10 C 1.37876 * 120.00319 * 174.35508 * 8 6 5 11 11 N 1.31510 * 120.00276 * 180.02562 * 10 8 6 12 12 Si 1.86804 * 119.99760 * 359.97438 * 10 8 6 13 13 H 1.48497 * 109.47270 * 90.00022 * 12 10 8 14 14 H 1.48506 * 109.46916 * 210.00159 * 12 10 8 15 15 H 1.48504 * 109.46914 * 329.99782 * 12 10 8 16 16 C 1.54196 * 112.08415 * 188.09239 * 6 5 4 17 17 N 1.44568 * 108.85326 * 281.18184 * 16 6 5 18 18 C 1.48060 * 113.85543 * 94.22827 * 17 16 6 19 19 C 1.53698 * 112.47015 * 318.32335 * 18 17 16 20 20 C 1.47912 * 110.99874 * 62.97245 * 5 4 3 21 21 H 1.09003 * 109.63147 * 273.69560 * 20 5 4 22 22 C 1.52995 * 109.63296 * 34.08683 * 20 5 4 23 23 H 1.09007 * 109.47041 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47267 * 300.00165 * 1 2 3 25 25 H 1.08998 * 109.47138 * 60.00221 * 1 2 3 26 26 H 1.09003 * 109.47084 * 60.00134 * 3 2 1 27 27 H 1.08998 * 109.47169 * 299.99945 * 3 2 1 28 28 H 1.08996 * 109.47432 * 307.40003 * 4 3 2 29 29 H 1.08993 * 109.47016 * 187.39827 * 4 3 2 30 30 H 0.97001 * 120.00109 * 179.97438 * 11 10 8 31 31 H 1.09005 * 109.57562 * 40.99497 * 16 6 5 32 32 H 1.09009 * 109.57432 * 161.24146 * 16 6 5 33 33 H 1.00899 * 110.99888 * 328.11462 * 17 16 6 34 34 H 1.09005 * 108.88275 * 79.08789 * 18 17 16 35 35 H 1.08995 * 108.88404 * 197.64702 * 18 17 16 36 36 H 1.09010 * 108.95277 * 197.87326 * 19 18 17 37 37 H 1.08999 * 108.95600 * 79.22935 * 19 18 17 38 38 H 1.09000 * 109.46798 * 60.00402 * 22 20 5 39 39 H 1.09004 * 109.46737 * 179.97438 * 22 20 5 40 40 H 1.08996 * 109.47276 * 300.00132 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9821 0.6151 -1.2778 6 6 3.5233 -0.6991 -1.4292 7 1 2.4387 -0.6853 -1.5370 8 6 3.8823 -1.4881 -0.1964 9 1 4.4898 -1.0380 0.5749 10 6 3.4353 -2.7845 -0.0532 11 7 3.7482 -3.4729 1.0228 12 14 2.3839 -3.5626 -1.3869 13 1 3.2604 -4.2376 -2.3774 14 1 1.4677 -4.5592 -0.7764 15 1 1.5877 -2.5095 -2.0668 16 6 4.1389 -1.3895 -2.6629 17 7 3.4446 -0.9359 -3.8470 18 6 4.0971 0.2090 -4.5221 19 6 4.6135 1.2609 -3.5275 20 6 3.6371 1.5081 -2.4052 21 1 2.6233 1.2950 -2.7443 22 6 3.7318 2.9667 -1.9533 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8481 0.5339 0.8172 29 1 3.9781 2.1718 0.1330 30 1 3.4333 -4.3848 1.1237 31 1 5.1951 -1.1307 -2.7372 32 1 4.0336 -2.4702 -2.5670 33 1 2.4775 -0.7322 -3.6435 34 1 4.9361 -0.1607 -5.1118 35 1 3.3774 0.6811 -5.1907 36 1 4.7859 2.1966 -4.0595 37 1 5.5577 0.9161 -3.1059 38 1 4.7482 3.1790 -1.6215 39 1 3.4775 3.6224 -2.7862 40 1 3.0378 3.1380 -1.1305 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220563763.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:06 Heat of formation + Delta-G solvation = -32.640671 kcal Electronic energy + Delta-G solvation = -20003.022276 eV Core-core repulsion = 17239.074134 eV Total energy + Delta-G solvation = -2763.948142 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.18572 -38.42563 -36.19543 -35.42550 -33.50406 -30.92385 -29.38055 -28.33170 -27.14794 -25.83551 -23.79161 -23.39681 -21.58846 -20.11938 -18.96771 -17.57179 -17.32153 -17.04214 -16.55229 -16.25288 -15.82572 -15.30689 -15.14115 -14.86707 -14.25923 -13.98352 -13.77537 -13.33131 -13.29859 -13.03396 -12.94951 -12.83839 -12.40768 -12.36757 -12.16818 -12.02440 -11.75533 -11.48045 -11.40066 -11.20154 -10.99149 -10.68104 -10.33889 -9.14431 -8.64376 -8.12832 -6.08170 1.37171 1.39235 1.49808 2.43538 3.02798 3.21749 3.35568 3.48411 4.01660 4.10974 4.20402 4.32418 4.39439 4.42386 4.47685 4.50169 4.50917 4.56565 4.65002 4.74416 4.81128 4.84247 4.92105 4.96849 5.01219 5.15301 5.18895 5.29721 5.42079 5.49263 5.65984 5.71843 6.19372 6.31806 6.47836 6.51271 6.59428 6.95601 7.08107 7.55263 9.03457 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.019953 B = 0.013218 C = 0.010174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.942028 B = 2117.742931 C = 2751.525599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.383 6.383 3 C 0.031 3.969 4 C 0.063 3.937 5 N -0.540 5.540 6 C 0.178 3.822 7 H 0.018 0.982 8 C -0.463 4.463 9 H 0.038 0.962 10 C 0.019 3.981 11 N -0.957 5.957 12 Si 0.941 3.059 13 H -0.282 1.282 14 H -0.310 1.310 15 H -0.247 1.247 16 C 0.067 3.933 17 N -0.709 5.709 18 C 0.063 3.937 19 C -0.140 4.140 20 C 0.082 3.918 21 H 0.027 0.973 22 C -0.145 4.145 23 H 0.069 0.931 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.257 0.743 31 H 0.059 0.941 32 H 0.041 0.959 33 H 0.333 0.667 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.604 14.053 -8.649 17.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.302 6.302 3 C -0.047 4.047 4 C -0.064 4.064 5 N -0.264 5.264 6 C 0.066 3.934 7 H 0.035 0.965 8 C -0.502 4.502 9 H 0.056 0.944 10 C -0.177 4.177 11 N -0.600 5.600 12 Si 0.770 3.230 13 H -0.209 1.209 14 H -0.238 1.238 15 H -0.171 1.171 16 C -0.064 4.064 17 N -0.339 5.339 18 C -0.066 4.066 19 C -0.179 4.179 20 C -0.025 4.025 21 H 0.045 0.955 22 C -0.202 4.202 23 H 0.088 0.912 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.121 0.879 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.151 0.849 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.703 13.254 -8.995 16.440 hybrid contribution -1.567 -0.299 0.668 1.729 sum -5.270 12.954 -8.327 16.276 Atomic orbital electron populations 1.22815 0.82263 1.02169 1.00374 1.88443 1.19102 1.27757 1.94879 1.23391 0.96182 0.85048 1.00123 1.22281 0.91022 1.00142 0.92977 1.59271 1.62875 1.02191 1.02027 1.19119 0.93915 0.86679 0.93650 0.96498 1.21118 1.29141 0.96831 1.03096 0.94398 1.25505 0.97137 0.97965 0.97045 1.70038 1.49137 1.10902 1.29910 0.86004 0.79180 0.78276 0.79504 1.20938 1.23841 1.17057 1.22093 0.98130 0.97605 0.88524 1.59664 1.06167 1.38294 1.29783 1.22416 0.99352 0.89041 0.95796 1.22000 0.99336 1.00343 0.96232 1.21394 0.96306 0.93571 0.91226 0.95542 1.22077 1.02659 0.93344 1.02149 0.91234 0.93124 0.93328 0.92708 0.92673 0.92273 0.87911 0.93415 0.92275 0.94133 0.84889 0.91311 0.89804 0.88875 0.92758 0.91763 0.90293 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.65 11.01 113.37 1.25 1.90 16 2 O -0.38 -15.70 6.90 -148.98 -1.03 -16.73 16 3 C 0.03 1.02 5.19 71.98 0.37 1.39 16 4 C 0.06 2.33 4.99 86.30 0.43 2.76 16 5 N -0.54 -20.95 4.05 -865.52 -3.50 -24.45 16 6 C 0.18 8.14 0.59 45.82 0.03 8.16 16 7 H 0.02 0.86 3.80 -2.39 -0.01 0.85 16 8 C -0.46 -26.27 7.23 25.60 0.19 -26.08 16 9 H 0.04 2.41 6.44 -2.91 -0.02 2.39 16 10 C 0.02 1.13 5.42 84.65 0.46 1.58 16 11 N -0.96 -61.66 13.96 21.45 0.30 -61.36 16 12 Si 0.94 48.20 24.57 68.60 1.69 49.89 16 13 H -0.28 -14.36 6.79 99.48 0.68 -13.69 16 14 H -0.31 -16.05 7.11 99.48 0.71 -15.34 16 15 H -0.25 -11.77 6.42 99.48 0.64 -11.13 16 16 C 0.07 2.95 4.87 87.14 0.42 3.37 16 17 N -0.71 -25.88 6.53 -513.00 -3.35 -29.23 16 18 C 0.06 1.75 6.50 86.31 0.56 2.31 16 19 C -0.14 -3.78 4.92 30.11 0.15 -3.64 16 20 C 0.08 2.43 1.60 44.00 0.07 2.50 16 21 H 0.03 0.83 6.69 -2.39 -0.02 0.81 16 22 C -0.15 -3.20 7.59 71.98 0.55 -2.66 16 23 H 0.07 2.28 8.14 -2.38 -0.02 2.27 16 24 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.06 1.60 5.73 -2.39 -0.01 1.59 16 28 H 0.06 2.73 5.69 -2.39 -0.01 2.71 16 29 H 0.10 3.06 6.14 -2.39 -0.01 3.04 16 30 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 31 H 0.06 2.66 6.93 -2.38 -0.02 2.64 16 32 H 0.04 2.03 3.99 -2.38 -0.01 2.02 16 33 H 0.33 12.14 7.51 -89.69 -0.67 11.46 16 34 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.09 1.91 7.72 -2.38 -0.02 1.89 16 37 H 0.05 1.73 7.23 -2.39 -0.02 1.72 16 38 H 0.06 1.43 8.02 -2.39 -0.02 1.41 16 39 H 0.08 1.35 8.11 -2.39 -0.02 1.33 16 40 H 0.06 1.33 5.02 -2.39 -0.01 1.32 16 Total: -1.00 -68.87 282.39 -1.16 -70.03 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.26 Total: 20.25 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: 4.47 Total: -8.40 kcal Atomic # 7 Polarization: -108.49 SS G_CDS: -6.55 Total: -115.05 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -1.03 Total: -16.73 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 1.69 Total: 49.89 kcal Total: -68.87 -1.16 -70.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220563763.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.393 kcal (2) G-P(sol) polarization free energy of solvation -68.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds