Wall clock time and date at job start Mon Mar 30 2020 04:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42904 * 113.99726 * 2 1 4 4 C 1.52996 * 109.46976 * 179.97438 * 3 2 1 5 5 N 1.46903 * 109.47024 * 61.53391 * 4 3 2 6 6 C 1.47900 * 110.99873 * 176.43370 * 5 4 3 7 7 C 1.50802 * 108.49345 * 153.77357 * 6 5 4 8 8 H 1.08998 * 108.95580 * 331.96511 * 7 6 5 9 9 C 1.53000 * 108.96097 * 213.22322 * 7 6 5 10 10 C 1.53697 * 112.09519 * 92.55057 * 7 6 5 11 11 N 1.48065 * 112.47129 * 318.55549 * 10 7 6 12 12 C 1.44577 * 113.85427 * 318.31051 * 11 10 7 13 13 H 1.09000 * 109.58096 * 334.42091 * 12 11 10 14 14 C 1.50702 * 109.57415 * 214.16364 * 12 11 10 15 15 H 1.08000 * 120.00261 * 240.00416 * 14 12 11 16 16 C 1.37882 * 119.99674 * 60.00620 * 14 12 11 17 17 N 1.31515 * 119.99982 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99767 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47089 * 60.00110 * 18 16 14 20 20 H 1.48500 * 109.47297 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47220 * 299.99808 * 18 16 14 22 22 C 1.40006 * 110.99826 * 48.45330 * 5 4 3 23 23 H 1.08996 * 109.46821 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46738 * 60.00285 * 1 2 3 25 25 H 1.08992 * 109.47106 * 300.00097 * 1 2 3 26 26 H 1.08993 * 109.47385 * 300.00180 * 3 2 1 27 27 H 1.09003 * 109.46562 * 60.00160 * 3 2 1 28 28 H 1.08997 * 109.47119 * 181.53235 * 4 3 2 29 29 H 1.09002 * 109.47352 * 301.53131 * 4 3 2 30 30 H 1.09004 * 109.63443 * 273.47371 * 6 5 4 31 31 H 1.09000 * 109.63708 * 33.87484 * 6 5 4 32 32 H 1.09007 * 109.46864 * 60.00008 * 9 7 6 33 33 H 1.08996 * 109.47468 * 179.97438 * 9 7 6 34 34 H 1.08997 * 109.47137 * 300.00290 * 9 7 6 35 35 H 1.08997 * 108.88207 * 79.31968 * 10 7 6 36 36 H 1.08998 * 108.88688 * 197.78096 * 10 7 6 37 37 H 1.00896 * 110.99872 * 192.19791 * 11 10 7 38 38 H 0.97004 * 119.99631 * 179.97438 * 17 16 14 39 39 H 1.09000 * 108.96339 * 308.77451 * 22 5 4 40 40 H 1.09005 * 108.96006 * 67.44032 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9720 0.4878 -1.2166 6 6 5.4478 0.4274 -1.2924 7 6 5.8356 -0.7735 -2.1181 8 1 5.0569 -1.5310 -2.0288 9 6 7.1483 -1.3448 -1.5785 10 6 6.0178 -0.4198 -3.6027 11 7 4.9747 0.5083 -4.0956 12 6 3.6451 0.1997 -3.6190 13 1 3.5802 -0.8615 -3.3788 14 6 2.6353 0.5387 -4.6851 15 1 1.8625 1.2661 -4.4852 16 6 2.6982 -0.0798 -5.9158 17 7 3.6397 -0.9652 -6.1594 18 14 1.4462 0.3398 -7.2370 19 1 1.5317 1.7872 -7.5582 20 1 1.7302 -0.4553 -8.4586 21 1 0.0818 0.0217 -6.7450 22 6 3.3636 1.0341 -2.3531 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5138 0.8899 26 1 1.6886 1.8464 -0.8899 27 1 1.6886 1.8463 0.8901 28 1 3.9787 2.1801 0.0281 29 1 3.8549 0.6205 0.8768 30 1 5.8278 1.3339 -1.7635 31 1 5.8626 0.3347 -0.2887 32 1 7.0151 -1.6412 -0.5380 33 1 7.4364 -2.2142 -2.1695 34 1 7.9285 -0.5863 -1.6432 35 1 6.9949 0.0441 -3.7374 36 1 5.9807 -1.3367 -4.1909 37 1 4.9925 0.5704 -5.1024 38 1 3.6836 -1.4006 -7.0251 39 1 2.2866 1.0795 -2.1911 40 1 3.7403 2.0457 -2.5047 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220564744.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:37 Heat of formation + Delta-G solvation = -55.979864 kcal Electronic energy + Delta-G solvation = -18999.234354 eV Core-core repulsion = 16234.274148 eV Total energy + Delta-G solvation = -2764.960206 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.50107 -38.59424 -36.33287 -35.57557 -33.28920 -30.93102 -29.46432 -27.32439 -27.14167 -25.56418 -25.27994 -22.81064 -21.12312 -20.23745 -18.63687 -17.42351 -17.25436 -16.69010 -16.47893 -16.38116 -15.78774 -15.56426 -15.20848 -14.96958 -14.26185 -13.86740 -13.75458 -13.44036 -13.23736 -12.94603 -12.86973 -12.79321 -12.54197 -12.36858 -12.26183 -12.03020 -11.71071 -11.47375 -11.29630 -11.17138 -11.01102 -10.75929 -10.45522 -8.87327 -8.71261 -8.17517 -6.32359 1.40238 1.41772 1.49649 2.39149 2.95861 3.06762 3.21041 3.94656 4.04368 4.12323 4.20310 4.29089 4.39505 4.47415 4.51814 4.58911 4.63326 4.70480 4.76441 4.82678 4.88233 4.90096 4.92941 4.99396 5.05598 5.07037 5.21430 5.32530 5.40697 5.48406 5.58445 5.80357 6.07392 6.32023 6.50245 6.67078 6.72691 7.07791 7.19627 7.37267 8.87207 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.016228 B = 0.009896 C = 0.006682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.005239 B = 2828.714463 C = 4189.183729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.057 3.943 4 C 0.062 3.938 5 N -0.559 5.559 6 C 0.087 3.913 7 C -0.086 4.086 8 H 0.041 0.959 9 C -0.130 4.130 10 C 0.076 3.924 11 N -0.692 5.692 12 C 0.233 3.767 13 H -0.034 1.034 14 C -0.540 4.540 15 H 0.054 0.946 16 C 0.018 3.982 17 N -0.920 5.920 18 Si 0.963 3.037 19 H -0.268 1.268 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.102 3.898 23 H 0.088 0.912 24 H 0.032 0.968 25 H 0.060 0.940 26 H 0.041 0.959 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.034 0.966 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.063 0.937 36 H -0.007 1.007 37 H 0.340 0.660 38 H 0.264 0.736 39 H 0.056 0.944 40 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.819 3.580 11.994 12.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.020 4.020 4 C -0.065 4.065 5 N -0.284 5.284 6 C -0.040 4.040 7 C -0.105 4.105 8 H 0.060 0.940 9 C -0.188 4.188 10 C -0.054 4.054 11 N -0.324 5.324 12 C 0.123 3.877 13 H -0.016 1.016 14 C -0.579 4.579 15 H 0.072 0.928 16 C -0.182 4.182 17 N -0.559 5.559 18 Si 0.788 3.212 19 H -0.193 1.193 20 H -0.209 1.209 21 H -0.199 1.199 22 C -0.028 4.028 23 H 0.106 0.894 24 H 0.051 0.949 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.108 0.892 30 H 0.052 0.948 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.011 0.989 37 H 0.159 0.841 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges 0.943 3.278 12.384 12.845 hybrid contribution -0.885 0.105 -1.849 2.052 sum 0.058 3.383 10.535 11.065 Atomic orbital electron populations 1.22843 0.80517 1.03248 1.00296 1.87986 1.20496 1.28279 1.95379 1.22772 0.93663 0.84989 1.00533 1.22190 0.93548 0.97573 0.93224 1.59150 1.08852 1.57473 1.02897 1.21714 0.86019 0.96920 0.99320 1.20920 0.98276 0.97734 0.93620 0.94047 1.21743 0.95342 1.00673 1.01023 1.22122 0.95138 0.93348 0.94745 1.59845 1.05877 1.50651 1.16073 1.18563 0.86514 0.91444 0.91129 1.01591 1.21632 1.13590 1.23949 0.98730 0.92818 1.25791 0.97552 0.94243 1.00575 1.69996 1.34501 1.27646 1.23801 0.85540 0.79221 0.78442 0.77989 1.19335 1.20922 1.19863 1.20866 0.97264 0.94594 0.90093 0.89363 0.94892 0.92110 0.94137 0.90382 0.92498 0.89232 0.94780 0.89172 0.91112 0.93089 0.91368 0.91905 0.98891 0.84102 0.92720 0.92591 0.98407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.96 16 2 O -0.40 -13.65 10.55 -148.98 -1.57 -15.22 16 3 C 0.06 1.66 5.37 71.98 0.39 2.05 16 4 C 0.06 1.84 5.41 86.30 0.47 2.31 16 5 N -0.56 -21.73 4.11 -912.46 -3.75 -25.48 16 6 C 0.09 3.04 4.85 85.40 0.41 3.45 16 7 C -0.09 -3.26 2.25 -11.27 -0.03 -3.29 16 8 H 0.04 1.86 7.22 -2.39 -0.02 1.85 16 9 C -0.13 -3.62 8.81 71.98 0.63 -2.98 16 10 C 0.08 3.35 5.87 86.31 0.51 3.86 16 11 N -0.69 -35.04 5.88 -494.33 -2.91 -37.94 16 12 C 0.23 12.51 2.05 45.01 0.09 12.60 16 13 H -0.03 -2.09 6.93 -2.39 -0.02 -2.10 16 14 C -0.54 -30.75 8.54 25.60 0.22 -30.53 16 15 H 0.05 3.00 7.72 -2.91 -0.02 2.98 16 16 C 0.02 1.00 5.05 84.66 0.43 1.43 16 17 N -0.92 -53.57 12.00 21.45 0.26 -53.31 16 18 Si 0.96 44.09 29.54 68.60 2.03 46.12 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 22 C 0.10 4.65 4.02 87.96 0.35 5.00 16 23 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 24 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.04 1.30 6.08 -2.39 -0.01 1.29 16 27 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.09 2.39 8.13 -2.39 -0.02 2.37 16 30 H 0.03 1.26 7.57 -2.38 -0.02 1.25 16 31 H 0.09 2.53 7.43 -2.39 -0.02 2.51 16 32 H 0.07 1.70 8.09 -2.38 -0.02 1.68 16 33 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.06 2.47 7.97 -2.39 -0.02 2.45 16 36 H -0.01 -0.37 8.14 -2.39 -0.02 -0.38 16 37 H 0.34 18.84 6.65 -89.70 -0.60 18.25 16 38 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 39 H 0.06 2.60 5.19 -2.39 -0.01 2.59 16 40 H 0.00 -0.09 8.07 -2.38 -0.02 -0.11 16 Total: -1.00 -65.01 307.12 -0.82 -65.83 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 0.40 Total: 24.16 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: 4.72 Total: -4.14 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -6.40 Total: -116.74 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: -1.57 Total: -15.22 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -65.01 -0.82 -65.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220564744.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.845 kcal (2) G-P(sol) polarization free energy of solvation -65.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds