Wall clock time and date at job start Mon Mar 30 2020 04:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47515 * 65.00249 * 4 3 2 6 6 C 1.44573 * 110.99893 * 66.04516 * 5 4 3 7 7 C 1.54209 * 108.84889 * 220.35485 * 6 5 4 8 8 H 1.09003 * 108.95602 * 41.76617 * 7 6 5 9 9 C 1.50697 * 108.95964 * 160.50970 * 7 6 5 10 10 H 1.08004 * 119.99816 * 0.02562 * 9 7 6 11 11 C 1.37878 * 119.99956 * 180.02562 * 9 7 6 12 12 N 1.31511 * 120.00150 * 359.97438 * 11 9 7 13 13 Si 1.86802 * 119.99930 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47037 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47315 * 119.99682 * 13 11 9 16 16 H 1.48494 * 109.47334 * 239.99910 * 13 11 9 17 17 N 1.40013 * 112.08232 * 281.18071 * 7 6 5 18 18 C 1.47910 * 114.06226 * 61.80851 * 17 7 6 19 19 C 1.50798 * 108.50189 * 280.07576 * 18 17 7 20 20 H 1.09001 * 108.95852 * 331.87307 * 19 18 17 21 21 C 1.53005 * 108.95301 * 213.22246 * 19 18 17 22 22 C 1.48062 * 111.00108 * 193.74131 * 5 4 3 23 23 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47054 * 299.99711 * 1 2 3 25 25 H 1.09000 * 109.47187 * 59.99767 * 1 2 3 26 26 H 1.08997 * 109.47442 * 300.00036 * 3 2 1 27 27 H 1.08997 * 109.47171 * 60.00232 * 3 2 1 28 28 H 1.09002 * 109.46929 * 185.00104 * 4 3 2 29 29 H 1.09002 * 109.46948 * 304.99600 * 4 3 2 30 30 H 1.09004 * 109.57656 * 340.16094 * 6 5 4 31 31 H 1.08988 * 109.57484 * 100.41912 * 6 5 4 32 32 H 0.96998 * 120.00021 * 180.02562 * 12 11 9 33 33 H 1.00898 * 111.00068 * 188.09439 * 17 7 6 34 34 H 1.08994 * 109.63483 * 39.77937 * 18 17 7 35 35 H 1.09007 * 109.62784 * 160.17554 * 18 17 7 36 36 H 1.08998 * 109.46794 * 60.00694 * 21 19 18 37 37 H 1.09005 * 109.46944 * 179.97438 * 21 19 18 38 38 H 1.08996 * 109.47651 * 300.00574 * 21 19 18 39 39 H 1.08999 * 108.88405 * 312.96322 * 22 5 4 40 40 H 1.09005 * 108.88184 * 71.42513 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9769 0.5628 -1.2561 6 6 3.6995 1.4219 -2.3854 7 6 3.1951 0.5563 -3.5577 8 1 2.5034 -0.1930 -3.1727 9 6 2.4653 1.4376 -4.5384 10 1 2.3720 2.4965 -4.3472 11 6 1.9166 0.8921 -5.6797 12 7 2.0307 -0.3971 -5.9127 13 14 1.0126 1.9847 -6.8956 14 1 1.0246 3.3864 -6.4055 15 1 1.6853 1.9163 -8.2177 16 1 -0.3913 1.5198 -7.0300 17 7 4.2430 -0.0927 -4.2218 18 6 5.0027 -1.0360 -3.3728 19 6 5.9774 -0.2473 -2.5350 20 1 6.2461 0.6645 -3.0685 21 6 7.2396 -1.0851 -2.3204 22 6 5.3900 0.1300 -1.1657 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6886 1.8464 -0.8899 27 1 1.6886 1.8464 0.8900 28 1 3.9785 2.1765 0.0889 29 1 3.8514 0.5683 0.8410 30 1 2.9342 2.1484 -2.1122 31 1 4.6100 1.9437 -2.6796 32 1 1.6450 -0.7808 -6.7158 33 1 3.9136 -0.5461 -5.0608 34 1 4.3160 -1.5780 -2.7226 35 1 5.5441 -1.7415 -4.0031 36 1 7.6890 -1.3187 -3.2856 37 1 7.9508 -0.5223 -1.7157 38 1 6.9786 -2.0107 -1.8076 39 1 5.9808 0.9410 -0.7398 40 1 5.4526 -0.7344 -0.5046 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220564807.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:42 Heat of formation + Delta-G solvation = -34.170504 kcal Electronic energy + Delta-G solvation = -19014.816580 eV Core-core repulsion = 16250.802099 eV Total energy + Delta-G solvation = -2764.014481 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.73988 -37.20657 -34.65261 -33.94825 -31.40573 -29.43367 -27.79392 -25.95702 -25.44873 -24.17850 -23.51679 -21.02237 -19.44040 -18.69251 -16.62571 -16.11485 -15.96245 -15.02824 -14.84617 -14.40393 -14.28683 -13.99635 -13.67735 -13.37016 -12.66974 -12.42544 -12.05333 -11.92400 -11.75583 -11.63732 -11.25430 -11.10709 -10.90279 -10.78831 -10.62466 -10.43472 -10.19927 -9.85185 -9.79077 -9.54852 -9.18554 -8.92835 -8.52037 -7.37413 -6.51461 -6.01454 -4.05039 3.30891 3.38861 3.42444 4.20363 4.39039 4.53839 5.21965 5.36743 5.40966 5.49374 5.52604 5.64509 5.69058 5.74728 5.75823 5.88762 5.92000 6.02808 6.03349 6.16359 6.18606 6.29033 6.38315 6.45805 6.58073 6.69921 6.75005 6.86641 7.01122 7.17014 7.57857 7.69172 7.83491 7.91909 8.15144 8.34893 8.88038 9.36302 9.48528 9.65423 11.07493 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.016080 B = 0.009916 C = 0.006914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.854677 B = 2823.050013 C = 4048.519703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.371 6.371 3 C 0.065 3.935 4 C 0.063 3.937 5 N -0.542 5.542 6 C 0.070 3.930 7 C 0.238 3.762 8 H -0.005 1.005 9 C -0.502 4.502 10 H 0.056 0.944 11 C 0.064 3.936 12 N -0.902 5.902 13 Si 0.896 3.104 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.286 1.286 17 N -0.695 5.695 18 C 0.072 3.928 19 C -0.091 4.091 20 H 0.074 0.926 21 C -0.140 4.140 22 C 0.076 3.924 23 H 0.080 0.920 24 H 0.030 0.970 25 H 0.043 0.957 26 H 0.058 0.942 27 H 0.041 0.959 28 H 0.038 0.962 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.031 0.969 32 H 0.263 0.737 33 H 0.370 0.630 34 H 0.031 0.969 35 H 0.046 0.954 36 H 0.054 0.946 37 H 0.045 0.955 38 H 0.050 0.950 39 H 0.017 0.983 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.194 0.989 10.097 10.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.289 6.289 3 C -0.012 4.012 4 C -0.065 4.065 5 N -0.266 5.266 6 C -0.058 4.058 7 C 0.127 3.873 8 H 0.013 0.987 9 C -0.542 4.542 10 H 0.074 0.926 11 C -0.136 4.136 12 N -0.544 5.544 13 Si 0.724 3.276 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.212 1.212 17 N -0.335 5.335 18 C -0.058 4.058 19 C -0.110 4.110 20 H 0.093 0.907 21 C -0.198 4.198 22 C -0.051 4.051 23 H 0.098 0.902 24 H 0.048 0.952 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.199 0.801 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.036 0.964 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.384 0.788 10.002 10.589 hybrid contribution -0.877 0.830 -0.483 1.301 sum 2.507 1.619 9.520 9.977 Atomic orbital electron populations 1.22673 0.82106 1.02257 0.99361 1.87984 1.18568 1.27180 1.95164 1.22632 0.93666 0.85315 0.99599 1.21994 0.93604 0.97190 0.93695 1.60771 1.19019 1.44614 1.02230 1.22237 0.98437 0.94441 0.90691 1.17802 0.87792 0.92212 0.89529 0.98735 1.21358 1.32621 0.94679 1.05547 0.92610 1.24964 0.95828 0.94955 0.97899 1.69554 1.46831 1.10757 1.27223 0.86483 0.79217 0.80706 0.81174 1.19913 1.21003 1.21217 1.58176 1.31970 1.32745 1.10581 1.21474 0.95568 0.93671 0.95049 1.21074 0.94984 0.99879 0.95065 0.90718 1.21832 0.97249 0.99591 1.01166 1.22330 0.87277 0.98262 0.97229 0.90151 0.95170 0.93857 0.92374 0.94110 0.94385 0.91052 0.92531 0.95038 0.92708 0.80138 0.95056 0.93550 0.92677 0.93617 0.93098 0.96433 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.37 -6.80 10.65 -35.23 -0.38 -7.18 16 3 C 0.06 1.06 5.98 37.16 0.22 1.28 16 4 C 0.06 1.03 5.22 -3.83 -0.02 1.01 16 5 N -0.54 -10.59 3.89 -234.31 -0.91 -11.50 16 6 C 0.07 1.54 4.44 -4.44 -0.02 1.52 16 7 C 0.24 6.18 2.19 -71.79 -0.16 6.02 16 8 H 0.00 -0.14 8.06 -51.93 -0.42 -0.56 16 9 C -0.50 -13.96 8.65 -34.44 -0.30 -14.26 16 10 H 0.06 1.53 7.69 -52.48 -0.40 1.12 16 11 C 0.06 1.77 5.28 -17.82 -0.09 1.67 16 12 N -0.90 -25.71 11.26 55.43 0.62 -25.09 16 13 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 17 N -0.69 -17.43 5.84 -112.23 -0.66 -18.09 16 18 C 0.07 1.54 5.73 -4.37 -0.03 1.51 16 19 C -0.09 -1.63 2.25 -91.36 -0.21 -1.84 16 20 H 0.07 1.48 7.23 -51.93 -0.38 1.10 16 21 C -0.14 -2.01 8.81 37.16 0.33 -1.68 16 22 C 0.08 1.33 4.79 -2.82 -0.01 1.31 16 23 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 24 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 1.04 6.26 -51.93 -0.33 0.72 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.04 0.56 8.12 -51.93 -0.42 0.14 16 29 H 0.07 1.08 8.03 -51.93 -0.42 0.66 16 30 H 0.06 1.23 5.65 -51.93 -0.29 0.93 16 31 H 0.03 0.71 6.94 -51.94 -0.36 0.35 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.37 10.11 6.13 -39.29 -0.24 9.87 16 34 H 0.03 0.72 7.57 -51.93 -0.39 0.33 16 35 H 0.05 0.92 7.72 -51.93 -0.40 0.52 16 36 H 0.05 0.76 8.09 -51.93 -0.42 0.34 16 37 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.02 0.28 8.03 -51.93 -0.42 -0.14 16 40 H 0.06 1.00 7.97 -51.93 -0.41 0.58 16 LS Contribution 307.51 15.07 4.63 4.63 Total: -1.00 -29.51 307.51 -7.85 -37.35 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -6.97 Total: 5.34 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: 0.83 Total: -1.84 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.94 Total: -54.68 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -0.38 Total: -7.18 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.51 -7.85 -37.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220564807.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.183 kcal (2) G-P(sol) polarization free energy of solvation -29.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds