Wall clock time and date at job start Mon Mar 30 2020 04:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47515 * 65.00249 * 4 3 2 6 6 C 1.44573 * 110.99893 * 66.04516 * 5 4 3 7 7 C 1.54209 * 108.84889 * 220.35485 * 6 5 4 8 8 H 1.09003 * 108.95602 * 41.76617 * 7 6 5 9 9 C 1.50697 * 108.95964 * 160.50970 * 7 6 5 10 10 H 1.08004 * 119.99816 * 0.02562 * 9 7 6 11 11 C 1.37878 * 119.99956 * 180.02562 * 9 7 6 12 12 N 1.31511 * 120.00150 * 359.97438 * 11 9 7 13 13 Si 1.86802 * 119.99930 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47037 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47315 * 119.99682 * 13 11 9 16 16 H 1.48494 * 109.47334 * 239.99910 * 13 11 9 17 17 N 1.40013 * 112.08232 * 281.18071 * 7 6 5 18 18 C 1.47910 * 114.06226 * 61.80851 * 17 7 6 19 19 C 1.50798 * 108.50189 * 280.07576 * 18 17 7 20 20 H 1.09001 * 108.95852 * 331.87307 * 19 18 17 21 21 C 1.53005 * 108.95301 * 213.22246 * 19 18 17 22 22 C 1.48062 * 111.00108 * 193.74131 * 5 4 3 23 23 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47054 * 299.99711 * 1 2 3 25 25 H 1.09000 * 109.47187 * 59.99767 * 1 2 3 26 26 H 1.08997 * 109.47442 * 300.00036 * 3 2 1 27 27 H 1.08997 * 109.47171 * 60.00232 * 3 2 1 28 28 H 1.09002 * 109.46929 * 185.00104 * 4 3 2 29 29 H 1.09002 * 109.46948 * 304.99600 * 4 3 2 30 30 H 1.09004 * 109.57656 * 340.16094 * 6 5 4 31 31 H 1.08988 * 109.57484 * 100.41912 * 6 5 4 32 32 H 0.96998 * 120.00021 * 180.02562 * 12 11 9 33 33 H 1.00898 * 111.00068 * 188.09439 * 17 7 6 34 34 H 1.08994 * 109.63483 * 39.77937 * 18 17 7 35 35 H 1.09007 * 109.62784 * 160.17554 * 18 17 7 36 36 H 1.08998 * 109.46794 * 60.00694 * 21 19 18 37 37 H 1.09005 * 109.46944 * 179.97438 * 21 19 18 38 38 H 1.08996 * 109.47651 * 300.00574 * 21 19 18 39 39 H 1.08999 * 108.88405 * 312.96322 * 22 5 4 40 40 H 1.09005 * 108.88184 * 71.42513 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9769 0.5628 -1.2561 6 6 3.6995 1.4219 -2.3854 7 6 3.1951 0.5563 -3.5577 8 1 2.5034 -0.1930 -3.1727 9 6 2.4653 1.4376 -4.5384 10 1 2.3720 2.4965 -4.3472 11 6 1.9166 0.8921 -5.6797 12 7 2.0307 -0.3971 -5.9127 13 14 1.0126 1.9847 -6.8956 14 1 1.0246 3.3864 -6.4055 15 1 1.6853 1.9163 -8.2177 16 1 -0.3913 1.5198 -7.0300 17 7 4.2430 -0.0927 -4.2218 18 6 5.0027 -1.0360 -3.3728 19 6 5.9774 -0.2473 -2.5350 20 1 6.2461 0.6645 -3.0685 21 6 7.2396 -1.0851 -2.3204 22 6 5.3900 0.1300 -1.1657 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6886 1.8464 -0.8899 27 1 1.6886 1.8464 0.8900 28 1 3.9785 2.1765 0.0889 29 1 3.8514 0.5683 0.8410 30 1 2.9342 2.1484 -2.1122 31 1 4.6100 1.9437 -2.6796 32 1 1.6450 -0.7808 -6.7158 33 1 3.9136 -0.5461 -5.0608 34 1 4.3160 -1.5780 -2.7226 35 1 5.5441 -1.7415 -4.0031 36 1 7.6890 -1.3187 -3.2856 37 1 7.9508 -0.5223 -1.7157 38 1 6.9786 -2.0107 -1.8076 39 1 5.9808 0.9410 -0.7398 40 1 5.4526 -0.7344 -0.5046 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220564807.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:42 Heat of formation + Delta-G solvation = -55.891614 kcal Electronic energy + Delta-G solvation = -19015.758478 eV Core-core repulsion = 16250.802099 eV Total energy + Delta-G solvation = -2764.956379 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.32295 -38.59739 -36.38906 -35.55088 -33.40381 -30.86127 -29.46176 -27.29282 -27.14240 -25.71630 -25.19416 -22.50147 -21.24863 -20.24783 -18.63918 -17.59893 -17.33110 -16.79947 -16.42863 -15.97767 -15.85644 -15.47634 -15.37855 -14.92669 -14.18080 -14.02355 -13.72434 -13.35430 -13.20463 -13.00767 -12.83885 -12.77966 -12.59050 -12.37526 -12.21391 -12.07345 -11.63853 -11.52283 -11.42117 -11.31090 -10.93178 -10.63381 -10.46796 -8.88157 -8.56236 -8.12787 -6.26169 1.40598 1.42353 1.53940 2.42231 2.95907 3.09717 3.12870 3.87928 4.06553 4.10736 4.29962 4.32479 4.39680 4.44669 4.48046 4.56585 4.62293 4.66975 4.69784 4.82262 4.85424 4.85966 4.89219 4.98452 5.00764 5.04737 5.13257 5.28178 5.40419 5.55505 5.62144 5.85892 6.17853 6.30409 6.43541 6.53412 6.73905 7.29647 7.43046 7.49527 8.94491 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.016080 B = 0.009916 C = 0.006914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.854677 B = 2823.050013 C = 4048.519703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.402 6.402 3 C 0.063 3.937 4 C 0.063 3.937 5 N -0.565 5.565 6 C 0.090 3.910 7 C 0.246 3.754 8 H -0.060 1.060 9 C -0.528 4.528 10 H 0.054 0.946 11 C 0.017 3.983 12 N -0.927 5.927 13 Si 0.963 3.037 14 H -0.268 1.268 15 H -0.279 1.279 16 H -0.282 1.282 17 N -0.701 5.701 18 C 0.076 3.924 19 C -0.087 4.087 20 H 0.057 0.943 21 C -0.131 4.131 22 C 0.076 3.924 23 H 0.088 0.912 24 H 0.062 0.938 25 H 0.026 0.974 26 H 0.033 0.967 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.026 0.974 32 H 0.265 0.735 33 H 0.353 0.647 34 H 0.008 0.992 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.040 0.960 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.060 1.791 11.335 12.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.322 6.322 3 C -0.014 4.014 4 C -0.065 4.065 5 N -0.290 5.290 6 C -0.038 4.038 7 C 0.135 3.865 8 H -0.043 1.043 9 C -0.567 4.567 10 H 0.072 0.928 11 C -0.181 4.181 12 N -0.569 5.569 13 Si 0.788 3.212 14 H -0.192 1.192 15 H -0.204 1.204 16 H -0.208 1.208 17 N -0.339 5.339 18 C -0.053 4.053 19 C -0.106 4.106 20 H 0.075 0.925 21 C -0.189 4.189 22 C -0.051 4.051 23 H 0.106 0.894 24 H 0.080 0.920 25 H 0.045 0.955 26 H 0.051 0.949 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.179 0.821 34 H 0.026 0.974 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.267 1.597 11.273 12.159 hybrid contribution -1.174 0.522 -0.840 1.535 sum 3.093 2.119 10.433 11.086 Atomic orbital electron populations 1.22801 0.80690 1.03093 1.00061 1.87930 1.20347 1.28533 1.95352 1.22731 0.93860 0.84707 1.00053 1.22123 0.93554 0.98429 0.92357 1.60642 1.20808 1.44691 1.02835 1.21816 0.97822 0.93722 0.90478 1.17661 0.87158 0.91228 0.90502 1.04270 1.21686 1.33648 0.94859 1.06492 0.92823 1.25761 0.96506 0.96254 0.99573 1.69687 1.47258 1.12243 1.27691 0.85441 0.77908 0.79093 0.78716 1.19186 1.20438 1.20786 1.58244 1.31398 1.33631 1.10607 1.21566 0.95378 0.93637 0.94761 1.21005 0.95716 0.99159 0.94746 0.92485 1.21748 0.95581 0.99541 1.02023 1.22400 0.86273 0.99472 0.96953 0.89397 0.91982 0.95508 0.94904 0.90484 0.92260 0.89327 0.92682 0.95531 0.92566 0.82136 0.97400 0.92487 0.92368 0.91186 0.92183 0.94177 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 11.01 113.37 1.25 2.12 16 2 O -0.40 -14.67 10.65 -148.98 -1.59 -16.26 16 3 C 0.06 2.00 5.98 71.98 0.43 2.43 16 4 C 0.06 1.92 5.22 86.30 0.45 2.37 16 5 N -0.56 -21.76 3.89 -895.21 -3.48 -25.25 16 6 C 0.09 4.04 4.44 87.15 0.39 4.43 16 7 C 0.25 13.30 2.19 45.82 0.10 13.40 16 8 H -0.06 -3.82 8.06 -2.39 -0.02 -3.84 16 9 C -0.53 -30.22 8.65 25.60 0.22 -30.00 16 10 H 0.05 3.00 7.69 -2.91 -0.02 2.98 16 11 C 0.02 0.96 5.28 84.66 0.45 1.41 16 12 N -0.93 -54.39 11.26 21.45 0.24 -54.15 16 13 Si 0.96 44.45 29.54 68.60 2.03 46.47 16 14 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 15 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 16 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 17 N -0.70 -36.39 5.84 -508.98 -2.97 -39.37 16 18 C 0.08 3.28 5.73 85.39 0.49 3.77 16 19 C -0.09 -3.03 2.25 -11.27 -0.03 -3.06 16 20 H 0.06 2.20 7.23 -2.39 -0.02 2.19 16 21 C -0.13 -3.39 8.81 71.98 0.63 -2.76 16 22 C 0.08 2.48 4.79 86.32 0.41 2.90 16 23 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 24 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 25 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.03 1.19 6.26 -2.39 -0.01 1.18 16 27 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.06 1.58 8.12 -2.39 -0.02 1.56 16 29 H 0.09 2.42 8.03 -2.39 -0.02 2.40 16 30 H 0.05 2.43 5.65 -2.38 -0.01 2.42 16 31 H 0.03 1.20 6.94 -2.39 -0.02 1.18 16 32 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 33 H 0.35 20.08 6.13 -89.70 -0.55 19.53 16 34 H 0.01 0.37 7.57 -2.39 -0.02 0.35 16 35 H 0.06 2.28 7.72 -2.38 -0.02 2.26 16 36 H 0.06 1.47 8.09 -2.39 -0.02 1.45 16 37 H 0.07 1.50 8.14 -2.38 -0.02 1.49 16 38 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.04 1.15 8.03 -2.39 -0.02 1.13 16 40 H 0.07 2.24 7.97 -2.38 -0.02 2.22 16 Total: -1.00 -65.95 307.51 -0.53 -66.48 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.45 Total: 25.06 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 4.80 Total: -2.99 kcal Atomic # 7 Polarization: -112.55 SS G_CDS: -6.21 Total: -118.76 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -1.59 Total: -16.26 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -65.95 -0.53 -66.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220564807.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.586 kcal (2) G-P(sol) polarization free energy of solvation -65.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds