Wall clock time and date at job start Mon Mar 30 2020 04:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 113.99641 * 2 1 4 4 C 1.53004 * 109.47074 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.46978 * 63.56137 * 4 3 2 6 6 C 1.48071 * 110.99984 * 196.25061 * 5 4 3 7 7 C 1.50747 * 112.93106 * 192.22470 * 6 5 4 8 8 H 1.08998 * 109.65348 * 332.75666 * 7 6 5 9 9 C 1.53004 * 109.55709 * 212.48877 * 7 6 5 10 10 C 1.54510 * 108.94191 * 92.65635 * 7 6 5 11 11 N 1.40085 * 111.51056 * 283.97542 * 10 7 6 12 12 C 1.47695 * 114.56725 * 61.44987 * 11 10 7 13 13 H 1.08998 * 109.73487 * 38.39956 * 12 11 10 14 14 C 1.50701 * 109.73441 * 159.04737 * 12 11 10 15 15 H 1.08000 * 119.99587 * 119.99999 * 14 12 11 16 16 C 1.37871 * 119.99984 * 299.72248 * 14 12 11 17 17 N 1.31520 * 120.00010 * 180.02562 * 16 14 12 18 18 Si 1.86801 * 120.00237 * 0.02562 * 16 14 12 19 19 H 1.48501 * 109.46910 * 89.99903 * 18 16 14 20 20 H 1.48503 * 109.47326 * 210.00206 * 18 16 14 21 21 H 1.48497 * 109.46892 * 330.00102 * 18 16 14 22 22 C 1.47749 * 110.99988 * 68.64980 * 5 4 3 23 23 H 1.08997 * 109.47230 * 299.99865 * 1 2 3 24 24 H 1.09000 * 109.47649 * 59.99772 * 1 2 3 25 25 H 1.08997 * 109.47144 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47063 * 60.00472 * 3 2 1 27 27 H 1.08995 * 109.47650 * 299.99984 * 3 2 1 28 28 H 1.09011 * 109.46869 * 303.56614 * 4 3 2 29 29 H 1.08992 * 109.47319 * 183.56428 * 4 3 2 30 30 H 1.08993 * 108.79626 * 71.33257 * 6 5 4 31 31 H 1.09000 * 108.78814 * 313.11265 * 6 5 4 32 32 H 1.09001 * 109.47008 * 300.54171 * 9 7 6 33 33 H 1.09006 * 109.47088 * 60.54301 * 9 7 6 34 34 H 1.09000 * 109.47494 * 180.54518 * 9 7 6 35 35 H 1.08994 * 109.07512 * 163.45393 * 10 7 6 36 36 H 1.09004 * 109.01986 * 44.46059 * 10 7 6 37 37 H 1.00899 * 111.00036 * 294.75054 * 11 10 7 38 38 H 0.96999 * 119.99789 * 180.02562 * 17 16 14 39 39 H 1.09000 * 108.98923 * 324.31098 * 22 5 4 40 40 H 1.08992 * 108.99317 * 205.56423 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9743 0.5316 -1.2411 6 6 5.3687 0.0479 -1.1214 7 6 5.9637 -0.3620 -2.4444 8 1 5.1702 -0.6809 -3.1202 9 6 6.9467 -1.5145 -2.2287 10 6 6.7090 0.8459 -3.0549 11 7 5.8164 1.7799 -3.5966 12 6 4.8818 2.3743 -2.6196 13 1 5.3977 2.5478 -1.6752 14 6 4.3477 3.6780 -3.1545 15 1 3.2859 3.8049 -3.3062 16 6 5.2138 4.7107 -3.4447 17 7 4.7476 5.8486 -3.9111 18 14 7.0496 4.4936 -3.1756 19 1 7.6709 3.9553 -4.4123 20 1 7.6602 5.8065 -2.8458 21 1 7.2769 3.5465 -2.0547 22 6 3.7451 1.4062 -2.4097 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 1.6885 1.8463 0.8900 27 1 1.6885 1.8464 -0.8899 28 1 3.8531 0.5894 0.8555 29 1 3.9785 2.1785 0.0632 30 1 5.3866 -0.8088 -0.4478 31 1 5.9800 0.8418 -0.6923 32 1 7.7375 -1.1954 -1.5498 33 1 6.4196 -2.3659 -1.7979 34 1 7.3834 -1.8034 -3.1847 35 1 7.3756 0.4927 -3.8416 36 1 7.3007 1.3285 -2.2770 37 1 5.3182 1.3901 -4.3827 38 1 5.3571 6.5750 -4.1156 39 1 2.8239 1.9684 -2.2567 40 1 3.6374 0.7871 -3.3003 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220564866.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:45 Heat of formation + Delta-G solvation = -56.811849 kcal Electronic energy + Delta-G solvation = -19003.237236 eV Core-core repulsion = 16238.240953 eV Total energy + Delta-G solvation = -2764.996283 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.84329 -38.72119 -36.13642 -35.53849 -33.87331 -31.14476 -29.72669 -27.43129 -27.14670 -25.45309 -25.12095 -23.04539 -21.55534 -20.31362 -19.20377 -17.54059 -17.36930 -16.76885 -16.58608 -16.13393 -15.92605 -15.65835 -15.48066 -14.89715 -14.51387 -14.11990 -13.70856 -13.33830 -13.27909 -13.15395 -13.00942 -12.78548 -12.52745 -12.34010 -12.20727 -12.15410 -11.84885 -11.67714 -11.62487 -11.47080 -11.19797 -10.76482 -10.50454 -9.30378 -8.69041 -8.24675 -6.36713 1.43000 1.50099 1.60224 2.47953 2.87543 2.99763 3.04653 3.71921 3.87634 3.94829 4.10237 4.22431 4.29178 4.43097 4.45908 4.51385 4.55366 4.57526 4.64623 4.67591 4.71379 4.76339 4.84935 4.86653 4.88808 5.01203 5.04838 5.16008 5.27362 5.38355 5.42942 5.59955 6.08014 6.16985 6.23716 6.36217 6.54585 6.80914 6.98492 7.40517 8.87015 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.019329 B = 0.009323 C = 0.006838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.287130 B = 3002.538305 C = 4093.485317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.071 3.929 4 C 0.058 3.942 5 N -0.541 5.541 6 C 0.069 3.931 7 C -0.129 4.129 8 H 0.070 0.930 9 C -0.129 4.129 10 C 0.073 3.927 11 N -0.709 5.709 12 C 0.181 3.819 13 H 0.024 0.976 14 C -0.513 4.513 15 H 0.037 0.963 16 C 0.032 3.968 17 N -0.946 5.946 18 Si 0.991 3.009 19 H -0.274 1.274 20 H -0.323 1.323 21 H -0.268 1.268 22 C 0.055 3.945 23 H 0.051 0.949 24 H 0.036 0.964 25 H 0.098 0.902 26 H 0.068 0.932 27 H 0.038 0.962 28 H 0.089 0.911 29 H 0.039 0.961 30 H 0.082 0.918 31 H 0.014 0.986 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.043 0.957 37 H 0.343 0.657 38 H 0.263 0.737 39 H 0.057 0.943 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.511 -14.378 7.449 16.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.006 4.006 4 C -0.070 4.070 5 N -0.266 5.266 6 C -0.058 4.058 7 C -0.150 4.150 8 H 0.088 0.912 9 C -0.187 4.187 10 C -0.058 4.058 11 N -0.341 5.341 12 C 0.073 3.927 13 H 0.041 0.959 14 C -0.552 4.552 15 H 0.055 0.945 16 C -0.167 4.167 17 N -0.586 5.586 18 Si 0.822 3.178 19 H -0.200 1.200 20 H -0.253 1.253 21 H -0.193 1.193 22 C -0.074 4.074 23 H 0.069 0.931 24 H 0.055 0.945 25 H 0.116 0.884 26 H 0.086 0.914 27 H 0.056 0.944 28 H 0.107 0.893 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.033 0.967 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.061 0.939 37 H 0.165 0.835 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.216 -14.307 7.412 16.115 hybrid contribution 0.262 0.928 0.049 0.966 sum 0.046 -13.379 7.461 15.319 Atomic orbital electron populations 1.22879 0.80378 1.03545 1.00265 1.87916 1.20530 1.27726 1.95402 1.22542 0.93098 0.84799 1.00160 1.22057 0.94158 0.97691 0.93102 1.62191 1.21801 1.39883 1.02675 1.21929 0.87171 0.98625 0.98125 1.21933 0.98762 0.97565 0.96731 0.91156 1.21669 0.98305 0.96463 1.02266 1.21234 0.95239 0.90418 0.98957 1.57850 1.25284 1.37888 1.13079 1.19496 0.89688 0.92363 0.91179 0.95862 1.21181 0.93378 0.96622 1.43978 0.94504 1.25763 1.03795 0.94139 0.93045 1.70086 1.37116 1.05279 1.46163 0.85030 0.79727 0.73900 0.79186 1.20026 1.25283 1.19340 1.22453 0.98892 0.92995 0.93078 0.93068 0.94545 0.88397 0.91435 0.94415 0.89314 0.94292 0.90014 0.96749 0.92451 0.91900 0.91574 0.90285 0.93851 0.83542 0.92807 0.92471 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 113.37 1.25 1.81 16 2 O -0.40 -11.78 10.63 -148.98 -1.58 -13.37 16 3 C 0.07 2.11 6.04 71.98 0.43 2.55 16 4 C 0.06 1.85 5.23 86.31 0.45 2.30 16 5 N -0.54 -18.56 4.64 -899.56 -4.18 -22.74 16 6 C 0.07 2.11 4.47 85.35 0.38 2.50 16 7 C -0.13 -3.65 2.47 -11.01 -0.03 -3.68 16 8 H 0.07 2.12 7.20 -2.39 -0.02 2.11 16 9 C -0.13 -2.76 8.91 71.98 0.64 -2.12 16 10 C 0.07 2.44 5.20 88.05 0.46 2.90 16 11 N -0.71 -28.86 3.67 -509.54 -1.87 -30.73 16 12 C 0.18 8.16 1.34 43.30 0.06 8.22 16 13 H 0.02 1.13 5.39 -2.39 -0.01 1.12 16 14 C -0.51 -28.75 9.25 25.60 0.24 -28.51 16 15 H 0.04 2.27 7.70 -2.91 -0.02 2.25 16 16 C 0.03 1.85 5.47 84.65 0.46 2.32 16 17 N -0.95 -59.40 13.96 21.45 0.30 -59.10 16 18 Si 0.99 49.38 25.89 68.60 1.78 51.16 16 19 H -0.27 -13.43 7.11 99.48 0.71 -12.72 16 20 H -0.32 -16.25 7.11 99.48 0.71 -15.54 16 21 H -0.27 -12.77 5.91 99.48 0.59 -12.18 16 22 C 0.05 2.17 4.64 85.42 0.40 2.56 16 23 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.04 0.80 8.14 -2.39 -0.02 0.79 16 25 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.04 1.26 6.26 -2.39 -0.01 1.24 16 28 H 0.09 2.50 8.00 -2.38 -0.02 2.48 16 29 H 0.04 1.36 7.59 -2.39 -0.02 1.34 16 30 H 0.08 2.23 7.69 -2.39 -0.02 2.21 16 31 H 0.01 0.49 6.41 -2.39 -0.02 0.47 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 1.23 8.10 -2.38 -0.02 1.21 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.08 2.33 8.04 -2.39 -0.02 2.31 16 36 H 0.04 1.58 6.95 -2.39 -0.02 1.56 16 37 H 0.34 13.27 8.15 -89.69 -0.73 12.54 16 38 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 39 H 0.06 2.44 5.28 -2.39 -0.01 2.42 16 40 H 0.06 2.43 6.73 -2.39 -0.02 2.42 16 Total: -1.00 -65.63 299.58 -0.65 -66.28 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.16 Total: 17.66 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: 4.74 Total: -9.16 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -5.75 Total: -112.57 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -1.58 Total: -13.37 kcal Atomic # 14 Polarization: 49.38 SS G_CDS: 1.78 Total: 51.16 kcal Total: -65.63 -0.65 -66.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220564866.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.472 kcal (2) G-P(sol) polarization free energy of solvation -65.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds