Wall clock time and date at job start Mon Mar 30 2020 04:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42896 * 114.00041 * 2 1 4 4 C 1.53001 * 109.47384 * 180.02562 * 3 2 1 5 5 N 1.46899 * 109.47182 * 66.62239 * 4 3 2 6 6 C 1.40081 * 111.00175 * 284.06977 * 5 4 3 7 7 C 1.54519 * 111.45060 * 188.18131 * 6 5 4 8 8 H 1.09006 * 109.55388 * 43.80331 * 7 6 5 9 9 C 1.52996 * 109.56081 * 164.12301 * 7 6 5 10 10 C 1.50790 * 108.92657 * 283.90606 * 7 6 5 11 11 N 1.48069 * 112.88366 * 92.73093 * 10 7 6 12 12 C 1.47744 * 113.78755 * 318.28609 * 11 10 7 13 13 H 1.08997 * 108.99476 * 79.49167 * 12 11 10 14 14 C 1.50696 * 108.93048 * 198.29301 * 12 11 10 15 15 H 1.08002 * 120.00275 * 122.35401 * 14 12 11 16 16 C 1.37875 * 119.99787 * 302.35432 * 14 12 11 17 17 N 1.31516 * 119.99816 * 179.97438 * 16 14 12 18 18 Si 1.86797 * 120.00146 * 0.02562 * 16 14 12 19 19 H 1.48499 * 109.47545 * 89.99581 * 18 16 14 20 20 H 1.48498 * 109.47229 * 209.99887 * 18 16 14 21 21 H 1.48503 * 109.46879 * 329.99775 * 18 16 14 22 22 C 1.47687 * 110.99757 * 52.71500 * 5 4 3 23 23 H 1.09003 * 109.47294 * 59.99797 * 1 2 3 24 24 H 1.09001 * 109.47283 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47322 * 300.00408 * 1 2 3 26 26 H 1.09000 * 109.47298 * 59.99738 * 3 2 1 27 27 H 1.09001 * 109.47593 * 299.99900 * 3 2 1 28 28 H 1.08999 * 109.47008 * 306.62635 * 4 3 2 29 29 H 1.09003 * 109.47063 * 186.62406 * 4 3 2 30 30 H 1.09000 * 109.07085 * 308.66615 * 6 5 4 31 31 H 1.08996 * 109.07265 * 67.69744 * 6 5 4 32 32 H 1.09007 * 109.46677 * 60.00122 * 9 7 6 33 33 H 1.08997 * 109.47457 * 179.97438 * 9 7 6 34 34 H 1.08994 * 109.46936 * 300.00429 * 9 7 6 35 35 H 1.09003 * 108.81926 * 331.85842 * 10 7 6 36 36 H 1.08998 * 108.72988 * 213.54936 * 10 7 6 37 37 H 1.00904 * 110.99675 * 84.34680 * 11 10 7 38 38 H 0.97004 * 119.99402 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.73900 * 271.62127 * 22 5 4 40 40 H 1.09003 * 109.73822 * 32.27870 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9796 0.5984 -1.2722 6 6 3.7376 -0.7810 -1.3008 7 6 4.3806 -1.4420 -2.5407 8 1 5.3883 -1.0507 -2.6814 9 6 4.4408 -2.9575 -2.3399 10 6 3.5414 -1.1273 -3.7532 11 7 3.9986 0.0842 -4.4713 12 6 4.3803 1.1977 -3.5784 13 1 5.3822 1.0141 -3.1906 14 6 4.3887 2.4793 -4.3712 15 1 3.7670 3.3077 -4.0653 16 6 5.1902 2.5942 -5.4872 17 7 5.1972 3.7124 -6.1794 18 14 6.2650 1.1611 -6.0168 19 1 5.5078 0.2948 -6.9555 20 1 7.4819 1.6783 -6.6926 21 1 6.6598 0.3709 -4.8230 22 6 3.4251 1.3432 -2.4207 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.6885 1.8464 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 3.8495 0.5447 0.8239 29 1 3.9782 2.1736 0.1179 30 1 4.1523 -1.2341 -0.4003 31 1 2.6616 -0.9535 -1.3231 32 1 3.4315 -3.3464 -2.2042 33 1 4.8942 -3.4223 -3.2154 34 1 5.0390 -3.1836 -1.4573 35 1 2.5087 -0.9793 -3.4373 36 1 3.5808 -1.9760 -4.4360 37 1 4.7450 -0.1363 -5.1136 38 1 5.7609 3.7931 -6.9648 39 1 2.4530 0.9315 -2.6916 40 1 3.3192 2.3963 -2.1600 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220564937.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:49 Heat of formation + Delta-G solvation = -23.736061 kcal Electronic energy + Delta-G solvation = -19219.630404 eV Core-core repulsion = 16456.068395 eV Total energy + Delta-G solvation = -2763.562010 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.54148 -37.51637 -34.88379 -33.83389 -31.69993 -29.65762 -28.15118 -26.47270 -25.80719 -24.49002 -23.36848 -21.43673 -19.90382 -18.90947 -16.70030 -16.39920 -16.23062 -15.68648 -15.32515 -14.88850 -14.58048 -14.13588 -13.80379 -13.14341 -12.84828 -12.48700 -12.41995 -12.33810 -12.03660 -11.68653 -11.59778 -11.42688 -11.17016 -11.01545 -10.79248 -10.43965 -10.26072 -10.07037 -9.93775 -9.58418 -9.40138 -9.29647 -8.54148 -7.56649 -7.18155 -6.03213 -4.01760 3.32793 3.34356 3.39314 3.80362 4.43858 4.47317 4.98688 5.10313 5.21429 5.26797 5.31850 5.38212 5.42448 5.43901 5.49823 5.60670 5.69359 5.82404 5.87496 5.97920 6.07554 6.12646 6.15727 6.22819 6.31748 6.41648 6.48372 6.55581 6.71658 6.87355 7.14013 7.18594 7.66268 7.73928 7.92369 8.29889 8.42240 8.56452 8.99750 9.60850 11.10101 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.025201 B = 0.008528 C = 0.007136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.794839 B = 3282.496136 C = 3922.843086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.021 3.979 4 C 0.065 3.935 5 N -0.555 5.555 6 C 0.083 3.917 7 C -0.129 4.129 8 H 0.074 0.926 9 C -0.136 4.136 10 C 0.059 3.941 11 N -0.691 5.691 12 C 0.186 3.814 13 H 0.015 0.985 14 C -0.496 4.496 15 H 0.075 0.925 16 C 0.077 3.923 17 N -0.900 5.900 18 Si 0.883 3.117 19 H -0.273 1.273 20 H -0.296 1.296 21 H -0.272 1.272 22 C 0.087 3.913 23 H 0.040 0.960 24 H 0.081 0.919 25 H 0.036 0.964 26 H 0.046 0.954 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.315 0.685 38 H 0.263 0.737 39 H 0.038 0.962 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.451 -9.395 11.754 16.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.303 6.303 3 C -0.057 4.057 4 C -0.063 4.063 5 N -0.278 5.278 6 C -0.046 4.046 7 C -0.150 4.150 8 H 0.093 0.907 9 C -0.194 4.194 10 C -0.071 4.071 11 N -0.328 5.328 12 C 0.079 3.921 13 H 0.032 0.968 14 C -0.535 4.535 15 H 0.093 0.907 16 C -0.125 4.125 17 N -0.539 5.539 18 Si 0.714 3.286 19 H -0.200 1.200 20 H -0.223 1.223 21 H -0.197 1.197 22 C -0.039 4.039 23 H 0.059 0.941 24 H 0.100 0.900 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.137 0.863 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.407 -9.184 11.487 15.670 hybrid contribution 0.317 -0.911 -0.092 0.969 sum -5.090 -10.095 11.395 16.052 Atomic orbital electron populations 1.22707 0.81943 1.02312 0.99753 1.87965 1.19120 1.27995 1.95200 1.23521 0.96649 0.85032 1.00544 1.22259 0.90020 1.01223 0.92825 1.59239 1.62401 1.03721 1.02425 1.21107 0.98905 0.87851 0.96786 1.21792 1.01263 0.94962 0.96945 0.90747 1.21738 1.01244 0.95463 1.00991 1.21905 0.98661 0.92946 0.93558 1.61395 1.43867 1.06201 1.21350 1.19349 0.93621 0.89486 0.89624 0.96759 1.21078 1.24937 0.96817 1.10663 0.90662 1.24954 0.96410 0.95234 0.95920 1.69897 1.40144 1.25710 1.18137 0.86887 0.79801 0.83126 0.78828 1.19979 1.22323 1.19744 1.21866 0.96282 0.96925 0.88877 0.94130 0.90027 0.94506 0.93563 0.92430 0.90794 0.89181 0.92605 0.93821 0.92902 0.93039 0.93114 0.92201 0.93065 0.86326 0.92720 0.94386 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.44 16 2 O -0.38 -5.41 7.98 -35.23 -0.28 -5.69 16 3 C 0.02 0.28 5.79 37.16 0.22 0.50 16 4 C 0.07 0.94 5.76 -3.82 -0.02 0.92 16 5 N -0.56 -9.95 4.16 -239.69 -1.00 -10.95 16 6 C 0.08 1.39 3.86 -6.55 -0.03 1.36 16 7 C -0.13 -2.23 2.47 -90.93 -0.22 -2.45 16 8 H 0.07 1.48 7.19 -51.93 -0.37 1.11 16 9 C -0.14 -1.87 8.91 37.16 0.33 -1.54 16 10 C 0.06 1.12 5.57 -4.29 -0.02 1.10 16 11 N -0.69 -16.11 6.22 -108.85 -0.68 -16.78 16 12 C 0.19 4.51 1.58 -69.51 -0.11 4.40 16 13 H 0.01 0.38 6.31 -51.93 -0.33 0.06 16 14 C -0.50 -14.12 9.21 -34.44 -0.32 -14.44 16 15 H 0.08 2.28 7.68 -52.49 -0.40 1.88 16 16 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 17 N -0.90 -27.75 13.96 55.43 0.77 -26.97 16 18 Si 0.88 22.26 24.48 -169.99 -4.16 18.09 16 19 H -0.27 -6.72 7.06 56.52 0.40 -6.32 16 20 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 21 H -0.27 -6.64 6.48 56.52 0.37 -6.27 16 22 C 0.09 1.79 3.40 -4.50 -0.02 1.78 16 23 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.85 6.40 -51.93 -0.33 0.52 16 28 H 0.07 0.99 7.73 -51.93 -0.40 0.59 16 29 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.06 0.88 7.66 -51.93 -0.40 0.48 16 31 H 0.04 0.75 5.24 -51.93 -0.27 0.48 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.67 8.10 -51.93 -0.42 0.25 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 1.14 6.52 -51.93 -0.34 0.80 16 36 H 0.05 0.89 7.69 -51.93 -0.40 0.49 16 37 H 0.32 7.52 4.11 -39.29 -0.16 7.36 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.04 0.80 6.48 -51.93 -0.34 0.47 16 40 H 0.08 1.58 6.88 -51.93 -0.36 1.22 16 LS Contribution 293.77 15.07 4.43 4.43 Total: -1.00 -30.87 293.77 -6.75 -37.62 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.65 Total: 5.04 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: 0.82 Total: -4.78 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.90 Total: -54.71 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: -0.28 Total: -5.69 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.16 Total: 18.09 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.87 -6.75 -37.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220564937.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.881 kcal (2) G-P(sol) polarization free energy of solvation -30.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds