Wall clock time and date at job start Mon Mar 30 2020 04:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42896 * 114.00041 * 2 1 4 4 C 1.53001 * 109.47384 * 180.02562 * 3 2 1 5 5 N 1.46899 * 109.47182 * 66.62239 * 4 3 2 6 6 C 1.40081 * 111.00175 * 284.06977 * 5 4 3 7 7 C 1.54519 * 111.45060 * 188.18131 * 6 5 4 8 8 H 1.09006 * 109.55388 * 43.80331 * 7 6 5 9 9 C 1.52996 * 109.56081 * 164.12301 * 7 6 5 10 10 C 1.50790 * 108.92657 * 283.90606 * 7 6 5 11 11 N 1.48069 * 112.88366 * 92.73093 * 10 7 6 12 12 C 1.47744 * 113.78755 * 318.28609 * 11 10 7 13 13 H 1.08997 * 108.99476 * 79.49167 * 12 11 10 14 14 C 1.50696 * 108.93048 * 198.29301 * 12 11 10 15 15 H 1.08002 * 120.00275 * 122.35401 * 14 12 11 16 16 C 1.37875 * 119.99787 * 302.35432 * 14 12 11 17 17 N 1.31516 * 119.99816 * 179.97438 * 16 14 12 18 18 Si 1.86797 * 120.00146 * 0.02562 * 16 14 12 19 19 H 1.48499 * 109.47545 * 89.99581 * 18 16 14 20 20 H 1.48498 * 109.47229 * 209.99887 * 18 16 14 21 21 H 1.48503 * 109.46879 * 329.99775 * 18 16 14 22 22 C 1.47687 * 110.99757 * 52.71500 * 5 4 3 23 23 H 1.09003 * 109.47294 * 59.99797 * 1 2 3 24 24 H 1.09001 * 109.47283 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47322 * 300.00408 * 1 2 3 26 26 H 1.09000 * 109.47298 * 59.99738 * 3 2 1 27 27 H 1.09001 * 109.47593 * 299.99900 * 3 2 1 28 28 H 1.08999 * 109.47008 * 306.62635 * 4 3 2 29 29 H 1.09003 * 109.47063 * 186.62406 * 4 3 2 30 30 H 1.09000 * 109.07085 * 308.66615 * 6 5 4 31 31 H 1.08996 * 109.07265 * 67.69744 * 6 5 4 32 32 H 1.09007 * 109.46677 * 60.00122 * 9 7 6 33 33 H 1.08997 * 109.47457 * 179.97438 * 9 7 6 34 34 H 1.08994 * 109.46936 * 300.00429 * 9 7 6 35 35 H 1.09003 * 108.81926 * 331.85842 * 10 7 6 36 36 H 1.08998 * 108.72988 * 213.54936 * 10 7 6 37 37 H 1.00904 * 110.99675 * 84.34680 * 11 10 7 38 38 H 0.97004 * 119.99402 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.73900 * 271.62127 * 22 5 4 40 40 H 1.09003 * 109.73822 * 32.27870 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9796 0.5984 -1.2722 6 6 3.7376 -0.7810 -1.3008 7 6 4.3806 -1.4420 -2.5407 8 1 5.3883 -1.0507 -2.6814 9 6 4.4408 -2.9575 -2.3399 10 6 3.5414 -1.1273 -3.7532 11 7 3.9986 0.0842 -4.4713 12 6 4.3803 1.1977 -3.5784 13 1 5.3822 1.0141 -3.1906 14 6 4.3887 2.4793 -4.3712 15 1 3.7670 3.3077 -4.0653 16 6 5.1902 2.5942 -5.4872 17 7 5.1972 3.7124 -6.1794 18 14 6.2650 1.1611 -6.0168 19 1 5.5078 0.2948 -6.9555 20 1 7.4819 1.6783 -6.6926 21 1 6.6598 0.3709 -4.8230 22 6 3.4251 1.3432 -2.4207 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.6885 1.8464 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 3.8495 0.5447 0.8239 29 1 3.9782 2.1736 0.1179 30 1 4.1523 -1.2341 -0.4003 31 1 2.6616 -0.9535 -1.3231 32 1 3.4315 -3.3464 -2.2042 33 1 4.8942 -3.4223 -3.2154 34 1 5.0390 -3.1836 -1.4573 35 1 2.5087 -0.9793 -3.4373 36 1 3.5808 -1.9760 -4.4360 37 1 4.7450 -0.1363 -5.1136 38 1 5.7609 3.7931 -6.9648 39 1 2.4530 0.9315 -2.6916 40 1 3.3192 2.3963 -2.1600 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220564937.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:48 Heat of formation + Delta-G solvation = -48.024931 kcal Electronic energy + Delta-G solvation = -19220.683649 eV Core-core repulsion = 16456.068395 eV Total energy + Delta-G solvation = -2764.615254 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.95236 -38.68468 -36.36348 -35.52022 -33.74085 -30.97492 -29.66795 -27.68853 -27.31339 -25.83114 -24.97528 -22.88006 -21.33140 -20.58470 -18.75029 -17.77537 -17.43604 -17.21620 -16.61908 -16.21633 -16.14994 -15.58679 -15.34890 -14.75763 -14.51632 -13.99683 -13.74179 -13.55226 -13.44491 -13.13683 -12.89088 -12.73224 -12.64409 -12.40438 -12.15577 -11.99508 -11.95314 -11.75416 -11.60532 -11.28735 -11.15736 -10.76834 -10.59821 -9.00845 -8.95225 -8.29074 -6.32456 1.27846 1.33028 1.38931 2.31341 2.77902 2.96207 3.17533 3.63248 3.84996 4.00965 4.08870 4.21291 4.27718 4.37350 4.48173 4.50274 4.52092 4.53881 4.67174 4.73078 4.73773 4.81670 4.87132 4.89350 4.93812 5.02328 5.10116 5.19205 5.26118 5.35645 5.49182 5.61867 6.14071 6.25201 6.28832 6.43190 6.50547 6.65244 6.81153 7.34636 8.87594 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.025201 B = 0.008528 C = 0.007136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.794839 B = 3282.496136 C = 3922.843086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.401 6.401 3 C 0.026 3.974 4 C 0.063 3.937 5 N -0.566 5.566 6 C 0.086 3.914 7 C -0.127 4.127 8 H 0.048 0.952 9 C -0.128 4.128 10 C 0.060 3.940 11 N -0.709 5.709 12 C 0.197 3.803 13 H -0.001 1.001 14 C -0.506 4.506 15 H 0.039 0.961 16 C 0.021 3.979 17 N -0.946 5.946 18 Si 0.947 3.053 19 H -0.260 1.260 20 H -0.293 1.293 21 H -0.261 1.261 22 C 0.103 3.897 23 H 0.033 0.967 24 H 0.097 0.903 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.038 0.962 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.311 0.689 38 H 0.265 0.735 39 H 0.031 0.969 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.573 -11.994 13.185 18.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.320 6.320 3 C -0.052 4.052 4 C -0.065 4.065 5 N -0.289 5.289 6 C -0.043 4.043 7 C -0.148 4.148 8 H 0.066 0.934 9 C -0.186 4.186 10 C -0.069 4.069 11 N -0.345 5.345 12 C 0.090 3.910 13 H 0.016 0.984 14 C -0.546 4.546 15 H 0.058 0.942 16 C -0.177 4.177 17 N -0.586 5.586 18 Si 0.775 3.225 19 H -0.186 1.186 20 H -0.221 1.221 21 H -0.186 1.186 22 C -0.024 4.024 23 H 0.051 0.949 24 H 0.115 0.885 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.056 0.944 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.132 0.868 38 H 0.074 0.926 39 H 0.050 0.950 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.550 -11.803 12.947 18.377 hybrid contribution 0.267 -0.058 -0.471 0.545 sum -5.284 -11.860 12.475 18.006 Atomic orbital electron populations 1.22868 0.80411 1.03543 1.00260 1.87912 1.20791 1.28023 1.95311 1.23391 0.95861 0.85155 1.00797 1.22360 0.90942 1.01687 0.91480 1.59163 1.62626 1.04389 1.02698 1.21134 0.98918 0.87019 0.97244 1.21762 0.99139 0.97618 0.96254 0.93393 1.21676 1.02543 0.92395 1.02028 1.21991 0.98686 0.91622 0.94606 1.61152 1.43520 1.07928 1.21921 1.19114 0.93796 0.88083 0.90043 0.98361 1.21393 1.24049 0.98024 1.11084 0.94239 1.25781 0.97957 0.97925 0.96048 1.70041 1.41587 1.27993 1.19010 0.85840 0.77921 0.79925 0.78838 1.18581 1.22081 1.18639 1.21488 0.95005 0.96784 0.89086 0.94856 0.88497 0.92760 0.91045 0.94414 0.88937 0.88803 0.90876 0.93840 0.91496 0.92346 0.91706 0.92265 0.91035 0.86825 0.92565 0.95044 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 113.37 1.25 1.75 16 2 O -0.40 -10.36 7.98 -148.98 -1.19 -11.54 16 3 C 0.03 0.66 5.79 71.98 0.42 1.08 16 4 C 0.06 1.71 5.76 86.30 0.50 2.20 16 5 N -0.57 -19.61 4.16 -912.24 -3.79 -23.40 16 6 C 0.09 2.67 3.86 88.05 0.34 3.01 16 7 C -0.13 -4.08 2.47 -11.00 -0.03 -4.11 16 8 H 0.05 1.82 7.19 -2.38 -0.02 1.80 16 9 C -0.13 -3.04 8.91 71.98 0.64 -2.40 16 10 C 0.06 2.15 5.57 85.36 0.48 2.63 16 11 N -0.71 -32.48 6.22 -498.30 -3.10 -35.59 16 12 C 0.20 9.65 1.58 43.29 0.07 9.72 16 13 H 0.00 -0.06 6.31 -2.39 -0.02 -0.07 16 14 C -0.51 -29.84 9.21 25.60 0.24 -29.60 16 15 H 0.04 2.53 7.68 -2.91 -0.02 2.51 16 16 C 0.02 1.25 5.47 84.65 0.46 1.71 16 17 N -0.95 -60.08 13.96 21.45 0.30 -59.78 16 18 Si 0.95 46.40 24.48 68.60 1.68 48.08 16 19 H -0.26 -12.12 7.06 99.48 0.70 -11.41 16 20 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 21 H -0.26 -12.23 6.48 99.48 0.64 -11.58 16 22 C 0.10 4.31 3.40 85.43 0.29 4.60 16 23 H 0.03 0.69 8.14 -2.39 -0.02 0.68 16 24 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.04 1.10 6.40 -2.39 -0.02 1.09 16 28 H 0.09 2.20 7.73 -2.39 -0.02 2.18 16 29 H 0.09 2.45 8.14 -2.39 -0.02 2.44 16 30 H 0.07 2.05 7.66 -2.39 -0.02 2.03 16 31 H 0.04 1.39 5.24 -2.39 -0.01 1.38 16 32 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.06 1.31 8.10 -2.39 -0.02 1.29 16 34 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.06 2.15 6.52 -2.39 -0.02 2.13 16 36 H 0.07 2.28 7.69 -2.39 -0.02 2.26 16 37 H 0.31 14.41 4.11 -89.69 -0.37 14.04 16 38 H 0.27 15.79 8.31 -92.71 -0.77 15.01 16 39 H 0.03 1.34 6.48 -2.39 -0.02 1.32 16 40 H 0.06 2.78 6.88 -2.39 -0.02 2.76 16 Total: -1.00 -67.75 293.77 -0.88 -68.62 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.58 Total: 23.01 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 4.65 Total: -9.41 kcal Atomic # 7 Polarization: -112.17 SS G_CDS: -6.59 Total: -118.77 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: -1.19 Total: -11.54 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.68 Total: 48.08 kcal Total: -67.75 -0.88 -68.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220564937.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.599 kcal (2) G-P(sol) polarization free energy of solvation -67.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds