Wall clock time and date at job start Mon Mar 30 2020 04:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 C 1.52996 * 109.47127 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47311 * 64.99673 * 4 3 2 6 6 C 1.48066 * 110.99801 * 66.04936 * 5 4 3 7 7 C 1.50743 * 112.94142 * 84.35036 * 6 5 4 8 8 H 1.08996 * 109.55917 * 332.70695 * 7 6 5 9 9 C 1.53006 * 109.55909 * 212.49023 * 7 6 5 10 10 C 1.54511 * 108.94245 * 92.65584 * 7 6 5 11 11 N 1.40086 * 111.50994 * 283.98854 * 10 7 6 12 12 C 1.47683 * 114.56895 * 61.44383 * 11 10 7 13 13 C 1.47746 * 111.00094 * 193.64177 * 5 4 3 14 14 H 1.08998 * 108.99784 * 313.44086 * 13 5 4 15 15 C 1.50709 * 108.99051 * 72.19009 * 13 5 4 16 16 H 1.08003 * 119.99479 * 359.97438 * 15 13 5 17 17 C 1.37871 * 120.00133 * 180.02562 * 15 13 5 18 18 N 1.31514 * 119.99997 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00202 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46639 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47473 * 119.99706 * 19 17 15 22 22 H 1.48502 * 109.47246 * 239.99869 * 19 17 15 23 23 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 25 25 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 26 26 H 1.09001 * 109.46707 * 299.99906 * 3 2 1 27 27 H 1.08999 * 109.46695 * 60.00012 * 3 2 1 28 28 H 1.09001 * 109.46958 * 185.00183 * 4 3 2 29 29 H 1.08998 * 109.46981 * 304.99923 * 4 3 2 30 30 H 1.08996 * 108.79097 * 205.24406 * 6 5 4 31 31 H 1.09003 * 108.78966 * 323.45408 * 6 5 4 32 32 H 1.08999 * 109.46792 * 60.00118 * 9 7 6 33 33 H 1.08999 * 109.47080 * 179.97438 * 9 7 6 34 34 H 1.09001 * 109.47059 * 300.00030 * 9 7 6 35 35 H 1.09005 * 109.07232 * 44.50395 * 10 7 6 36 36 H 1.08993 * 109.07534 * 163.52890 * 10 7 6 37 37 H 1.00892 * 110.99833 * 188.14963 * 11 10 7 38 38 H 1.09000 * 109.73865 * 38.34806 * 12 11 10 39 39 H 1.09007 * 109.73527 * 158.99548 * 12 11 10 40 40 H 0.97004 * 120.00359 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9769 0.5626 -1.2561 6 6 3.6929 1.4423 -2.4127 7 6 4.7669 2.4745 -2.6435 8 1 5.2653 2.6997 -1.7007 9 6 4.1385 3.7502 -3.2081 10 6 5.7934 1.9132 -3.6528 11 7 6.6416 0.9730 -3.0535 12 6 5.9551 -0.2201 -2.5183 13 6 5.3877 0.1328 -1.1667 14 1 5.9779 0.9405 -0.7341 15 6 5.4769 -1.0732 -0.2673 16 1 4.5834 -1.4749 0.1874 17 6 6.6991 -1.6631 -0.0243 18 7 7.7871 -1.1736 -0.5778 19 14 6.8098 -3.1575 1.0910 20 1 5.4539 -3.5081 1.5847 21 1 7.3715 -4.3024 0.3303 22 1 7.6921 -2.8495 2.2451 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 1.6887 1.8463 -0.8900 27 1 1.6887 1.8463 0.8900 28 1 3.9786 2.1764 0.0890 29 1 3.8514 0.5681 0.8409 30 1 3.5994 0.8269 -3.3074 31 1 2.7457 1.9536 -2.2406 32 1 3.4077 4.1397 -2.4993 33 1 4.9162 4.4957 -3.3741 34 1 3.6438 3.5242 -4.1528 35 1 5.2601 1.4379 -4.4761 36 1 6.3937 2.7344 -4.0443 37 1 7.3890 0.7104 -3.6783 38 1 5.1490 -0.5136 -3.1908 39 1 6.6666 -1.0397 -2.4171 40 1 8.6470 -1.5888 -0.4071 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220566472.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:03 Heat of formation + Delta-G solvation = -27.382326 kcal Electronic energy + Delta-G solvation = -19115.910023 eV Core-core repulsion = 16352.189900 eV Total energy + Delta-G solvation = -2763.720123 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.89618 -37.26212 -34.45494 -33.70902 -31.83596 -29.53328 -27.38501 -26.04981 -25.42539 -24.49126 -23.02109 -21.18526 -19.70985 -18.48706 -16.47605 -16.16040 -15.70052 -15.20593 -15.02578 -14.43972 -14.25202 -13.95000 -13.81325 -13.37754 -12.62633 -12.35268 -12.23904 -11.91091 -11.62735 -11.44977 -11.10524 -11.04985 -10.97589 -10.67915 -10.64415 -10.34811 -10.16589 -9.78371 -9.75944 -9.58597 -9.18833 -8.92931 -8.28675 -7.28077 -6.91304 -5.85661 -3.91847 3.37516 3.45608 3.52511 4.27365 4.51187 4.97631 5.09146 5.27710 5.39227 5.42834 5.47474 5.54716 5.64640 5.71127 5.81129 5.84774 5.93194 5.97138 6.01861 6.11728 6.17352 6.29510 6.35345 6.44725 6.57543 6.72619 6.79425 6.95180 7.08518 7.40612 7.61298 7.75868 8.00218 8.23387 8.34836 8.41259 8.58261 8.78187 9.20537 9.71759 11.17013 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.015936 B = 0.010821 C = 0.006877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.580136 B = 2586.967739 C = 4070.355148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.067 3.933 4 C 0.066 3.934 5 N -0.531 5.531 6 C 0.060 3.940 7 C -0.125 4.125 8 H 0.077 0.923 9 C -0.137 4.137 10 C 0.094 3.906 11 N -0.700 5.700 12 C 0.085 3.915 13 C 0.223 3.777 14 H 0.015 0.985 15 C -0.497 4.497 16 H 0.065 0.935 17 C 0.055 3.945 18 N -0.883 5.883 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.287 1.287 22 H -0.287 1.287 23 H 0.080 0.920 24 H 0.032 0.968 25 H 0.031 0.969 26 H 0.041 0.959 27 H 0.039 0.961 28 H 0.032 0.968 29 H 0.090 0.910 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.049 0.951 35 H -0.001 1.001 36 H 0.051 0.949 37 H 0.332 0.668 38 H 0.007 0.993 39 H 0.105 0.895 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.745 6.945 -3.285 11.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C -0.010 4.010 4 C -0.063 4.063 5 N -0.256 5.256 6 C -0.068 4.068 7 C -0.145 4.145 8 H 0.096 0.904 9 C -0.195 4.195 10 C -0.038 4.038 11 N -0.331 5.331 12 C -0.043 4.043 13 C 0.118 3.882 14 H 0.033 0.967 15 C -0.537 4.537 16 H 0.083 0.917 17 C -0.146 4.146 18 N -0.523 5.523 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.213 1.213 22 H -0.214 1.214 23 H 0.098 0.902 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.017 0.983 36 H 0.070 0.930 37 H 0.151 0.849 38 H 0.026 0.974 39 H 0.123 0.877 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.739 6.616 -2.781 11.308 hybrid contribution 0.214 -0.191 -0.165 0.331 sum -8.525 6.425 -2.946 11.074 Atomic orbital electron populations 1.22668 0.83006 1.02081 0.98876 1.88126 1.17650 1.27457 1.95003 1.22717 0.95262 0.84639 0.98382 1.21904 0.91162 0.97549 0.95650 1.62183 1.25094 1.38080 1.00218 1.22014 0.96201 0.92954 0.95673 1.21678 0.97386 0.95457 1.00002 0.90428 1.21763 1.00108 0.97197 1.00447 1.20763 0.94178 0.95118 0.93729 1.57380 1.15093 1.17385 1.43222 1.21935 0.96392 0.91022 0.94926 1.19033 0.80593 0.95437 0.93172 0.96706 1.21294 0.93213 1.12236 1.26924 0.91706 1.24955 0.95851 0.97375 0.96407 1.70032 0.98092 1.40422 1.43734 0.86553 0.77978 0.83003 0.80570 1.19730 1.21301 1.21366 0.90178 0.94896 0.95034 0.94059 0.94318 0.94981 0.89136 0.92489 0.92810 0.93172 0.93135 0.93167 0.98300 0.93040 0.84946 0.97450 0.87694 0.93357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.53 16 2 O -0.36 -6.73 10.65 -35.23 -0.38 -7.11 16 3 C 0.07 1.12 6.02 37.16 0.22 1.34 16 4 C 0.07 1.32 5.14 -3.83 -0.02 1.30 16 5 N -0.53 -11.73 4.35 -229.09 -1.00 -12.72 16 6 C 0.06 1.13 4.56 -4.31 -0.02 1.11 16 7 C -0.12 -2.19 2.40 -90.95 -0.22 -2.41 16 8 H 0.08 1.57 6.67 -51.93 -0.35 1.23 16 9 C -0.14 -1.87 8.92 37.16 0.33 -1.54 16 10 C 0.09 1.69 5.41 -6.55 -0.04 1.66 16 11 N -0.70 -14.77 6.11 -118.27 -0.72 -15.50 16 12 C 0.08 2.05 5.31 -4.51 -0.02 2.02 16 13 C 0.22 5.65 1.31 -69.51 -0.09 5.55 16 14 H 0.02 0.43 7.08 -51.93 -0.37 0.07 16 15 C -0.50 -13.81 7.82 -34.44 -0.27 -14.08 16 16 H 0.06 1.87 7.62 -52.48 -0.40 1.47 16 17 C 0.06 1.52 5.03 -17.82 -0.09 1.43 16 18 N -0.88 -24.95 11.41 55.43 0.63 -24.32 16 19 Si 0.89 21.66 29.54 -169.99 -5.02 16.63 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.04 0.64 6.07 -51.93 -0.32 0.33 16 27 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.03 0.61 7.60 -51.93 -0.39 0.22 16 29 H 0.09 2.02 7.07 -51.93 -0.37 1.65 16 30 H 0.06 1.13 6.52 -51.93 -0.34 0.79 16 31 H 0.05 0.91 5.29 -51.93 -0.27 0.63 16 32 H 0.05 0.63 8.09 -51.93 -0.42 0.21 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.00 -0.01 7.60 -51.93 -0.39 -0.41 16 36 H 0.05 0.84 8.04 -51.93 -0.42 0.42 16 37 H 0.33 6.49 8.85 -39.30 -0.35 6.14 16 38 H 0.01 0.18 6.77 -51.93 -0.35 -0.17 16 39 H 0.11 2.82 5.73 -51.93 -0.30 2.52 16 40 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 302.48 15.07 4.56 4.56 Total: -1.00 -29.40 302.48 -7.73 -37.12 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -6.70 Total: 3.41 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: 0.90 Total: -2.08 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: -1.09 Total: -52.54 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.38 Total: -7.11 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.40 -7.73 -37.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220566472.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.742 kcal (2) G-P(sol) polarization free energy of solvation -29.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds