Wall clock time and date at job start Mon Mar 30 2020 04:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00267 * 2 1 4 4 C 1.52996 * 109.47127 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47311 * 64.99673 * 4 3 2 6 6 C 1.48066 * 110.99801 * 66.04936 * 5 4 3 7 7 C 1.50743 * 112.94142 * 84.35036 * 6 5 4 8 8 H 1.08996 * 109.55917 * 332.70695 * 7 6 5 9 9 C 1.53006 * 109.55909 * 212.49023 * 7 6 5 10 10 C 1.54511 * 108.94245 * 92.65584 * 7 6 5 11 11 N 1.40086 * 111.50994 * 283.98854 * 10 7 6 12 12 C 1.47683 * 114.56895 * 61.44383 * 11 10 7 13 13 C 1.47746 * 111.00094 * 193.64177 * 5 4 3 14 14 H 1.08998 * 108.99784 * 313.44086 * 13 5 4 15 15 C 1.50709 * 108.99051 * 72.19009 * 13 5 4 16 16 H 1.08003 * 119.99479 * 359.97438 * 15 13 5 17 17 C 1.37871 * 120.00133 * 180.02562 * 15 13 5 18 18 N 1.31514 * 119.99997 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00202 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46639 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47473 * 119.99706 * 19 17 15 22 22 H 1.48502 * 109.47246 * 239.99869 * 19 17 15 23 23 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46938 * 59.99878 * 1 2 3 25 25 H 1.09004 * 109.46926 * 299.99999 * 1 2 3 26 26 H 1.09001 * 109.46707 * 299.99906 * 3 2 1 27 27 H 1.08999 * 109.46695 * 60.00012 * 3 2 1 28 28 H 1.09001 * 109.46958 * 185.00183 * 4 3 2 29 29 H 1.08998 * 109.46981 * 304.99923 * 4 3 2 30 30 H 1.08996 * 108.79097 * 205.24406 * 6 5 4 31 31 H 1.09003 * 108.78966 * 323.45408 * 6 5 4 32 32 H 1.08999 * 109.46792 * 60.00118 * 9 7 6 33 33 H 1.08999 * 109.47080 * 179.97438 * 9 7 6 34 34 H 1.09001 * 109.47059 * 300.00030 * 9 7 6 35 35 H 1.09005 * 109.07232 * 44.50395 * 10 7 6 36 36 H 1.08993 * 109.07534 * 163.52890 * 10 7 6 37 37 H 1.00892 * 110.99833 * 188.14963 * 11 10 7 38 38 H 1.09000 * 109.73865 * 38.34806 * 12 11 10 39 39 H 1.09007 * 109.73527 * 158.99548 * 12 11 10 40 40 H 0.97004 * 120.00359 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9769 0.5626 -1.2561 6 6 3.6929 1.4423 -2.4127 7 6 4.7669 2.4745 -2.6435 8 1 5.2653 2.6997 -1.7007 9 6 4.1385 3.7502 -3.2081 10 6 5.7934 1.9132 -3.6528 11 7 6.6416 0.9730 -3.0535 12 6 5.9551 -0.2201 -2.5183 13 6 5.3877 0.1328 -1.1667 14 1 5.9779 0.9405 -0.7341 15 6 5.4769 -1.0732 -0.2673 16 1 4.5834 -1.4749 0.1874 17 6 6.6991 -1.6631 -0.0243 18 7 7.7871 -1.1736 -0.5778 19 14 6.8098 -3.1575 1.0910 20 1 5.4539 -3.5081 1.5847 21 1 7.3715 -4.3024 0.3303 22 1 7.6921 -2.8495 2.2451 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5139 0.8900 26 1 1.6887 1.8463 -0.8900 27 1 1.6887 1.8463 0.8900 28 1 3.9786 2.1764 0.0890 29 1 3.8514 0.5681 0.8409 30 1 3.5994 0.8269 -3.3074 31 1 2.7457 1.9536 -2.2406 32 1 3.4077 4.1397 -2.4993 33 1 4.9162 4.4957 -3.3741 34 1 3.6438 3.5242 -4.1528 35 1 5.2601 1.4379 -4.4761 36 1 6.3937 2.7344 -4.0443 37 1 7.3890 0.7104 -3.6783 38 1 5.1490 -0.5136 -3.1908 39 1 6.6666 -1.0397 -2.4171 40 1 8.6470 -1.5888 -0.4071 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220566472.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:03 Heat of formation + Delta-G solvation = -49.956947 kcal Electronic energy + Delta-G solvation = -19116.888932 eV Core-core repulsion = 16352.189900 eV Total energy + Delta-G solvation = -2764.699032 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.51558 -38.59606 -36.09425 -35.51055 -33.61077 -31.14631 -28.99033 -27.46092 -26.92797 -26.03718 -24.78207 -22.67308 -21.39752 -20.20225 -18.35511 -17.67888 -17.23189 -16.84703 -16.53845 -16.16710 -15.67217 -15.63236 -15.19581 -14.99460 -14.19436 -13.96324 -13.57231 -13.33847 -13.14721 -12.97388 -12.79604 -12.67035 -12.50540 -12.32560 -12.28101 -11.95312 -11.90237 -11.57242 -11.37451 -11.28436 -10.93599 -10.41441 -10.37955 -8.97424 -8.66937 -7.98664 -6.12214 1.41823 1.44240 1.56704 2.47558 3.04766 3.20884 3.37786 3.60091 3.89331 4.05732 4.14404 4.32758 4.42347 4.47429 4.58855 4.61838 4.64729 4.68338 4.73577 4.79853 4.83403 4.90067 4.91727 4.97121 5.07800 5.16673 5.19499 5.32337 5.44441 5.50157 5.77216 5.82266 6.40169 6.42536 6.49295 6.60148 6.88264 6.95869 7.07753 7.55256 9.02161 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.015936 B = 0.010821 C = 0.006877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.580136 B = 2586.967739 C = 4070.355148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.406 6.406 3 C 0.076 3.924 4 C 0.066 3.934 5 N -0.547 5.547 6 C 0.062 3.938 7 C -0.120 4.120 8 H 0.046 0.954 9 C -0.128 4.128 10 C 0.089 3.911 11 N -0.708 5.708 12 C 0.100 3.900 13 C 0.238 3.762 14 H -0.025 1.025 15 C -0.516 4.516 16 H 0.046 0.954 17 C 0.014 3.986 18 N -0.902 5.902 19 Si 0.951 3.049 20 H -0.275 1.275 21 H -0.279 1.279 22 H -0.282 1.282 23 H 0.086 0.914 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.038 0.962 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.007 0.993 36 H 0.075 0.925 37 H 0.340 0.660 38 H 0.003 0.997 39 H 0.074 0.926 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.158 8.039 -3.875 13.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.325 6.325 3 C -0.001 4.001 4 C -0.062 4.062 5 N -0.271 5.271 6 C -0.066 4.066 7 C -0.141 4.141 8 H 0.065 0.935 9 C -0.186 4.186 10 C -0.042 4.042 11 N -0.340 5.340 12 C -0.029 4.029 13 C 0.131 3.869 14 H -0.007 1.007 15 C -0.555 4.555 16 H 0.064 0.936 17 C -0.185 4.185 18 N -0.542 5.542 19 Si 0.777 3.223 20 H -0.200 1.200 21 H -0.205 1.205 22 H -0.208 1.208 23 H 0.105 0.895 24 H 0.066 0.934 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.025 0.975 36 H 0.094 0.906 37 H 0.159 0.841 38 H 0.021 0.979 39 H 0.092 0.908 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.168 7.730 -3.382 13.213 hybrid contribution 0.623 -0.513 0.020 0.808 sum -9.545 7.217 -3.362 12.429 Atomic orbital electron populations 1.22872 0.80397 1.03187 1.00552 1.88060 1.20610 1.28478 1.95378 1.22626 0.92418 0.84600 1.00431 1.21884 0.94006 0.96741 0.93578 1.62067 1.22701 1.40195 1.02156 1.22061 0.97828 0.92826 0.93872 1.21621 0.96723 0.97002 0.98705 0.93549 1.21690 1.00609 0.95043 1.01223 1.20920 0.94440 0.94964 0.93904 1.57303 1.15804 1.16598 1.44279 1.21540 0.95404 0.91399 0.94556 1.18702 0.82161 0.93126 0.92894 1.00728 1.21464 0.92755 1.13403 1.27864 0.93594 1.25603 0.95534 0.99779 0.97585 1.70140 0.98331 1.41351 1.44362 0.85622 0.77657 0.80039 0.78955 1.20017 1.20519 1.20822 0.89527 0.93375 0.93049 0.92340 0.91636 0.94428 0.92610 0.93417 0.90334 0.91868 0.91949 0.91560 0.97468 0.90629 0.84123 0.97851 0.90762 0.93267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.01 113.37 1.25 1.89 16 2 O -0.41 -14.57 10.65 -148.98 -1.59 -16.15 16 3 C 0.08 2.41 6.02 71.98 0.43 2.84 16 4 C 0.07 2.68 5.14 86.30 0.44 3.13 16 5 N -0.55 -24.47 4.35 -878.71 -3.82 -28.30 16 6 C 0.06 2.26 4.56 85.35 0.39 2.64 16 7 C -0.12 -4.04 2.40 -11.01 -0.03 -4.07 16 8 H 0.05 1.87 6.67 -2.39 -0.02 1.86 16 9 C -0.13 -3.04 8.92 71.98 0.64 -2.40 16 10 C 0.09 3.07 5.41 88.05 0.48 3.55 16 11 N -0.71 -30.09 6.11 -528.11 -3.23 -33.32 16 12 C 0.10 4.94 5.31 85.43 0.45 5.39 16 13 C 0.24 12.47 1.31 43.29 0.06 12.52 16 14 H -0.02 -1.47 7.08 -2.39 -0.02 -1.49 16 15 C -0.52 -29.75 7.82 25.60 0.20 -29.55 16 16 H 0.05 2.76 7.62 -2.91 -0.02 2.74 16 17 C 0.01 0.80 5.03 84.65 0.43 1.23 16 18 N -0.90 -52.25 11.41 21.44 0.24 -52.00 16 19 Si 0.95 45.40 29.54 68.60 2.03 47.42 16 20 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 22 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 23 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 26 H 0.06 1.64 6.07 -2.39 -0.01 1.63 16 27 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.04 1.45 7.60 -2.39 -0.02 1.43 16 29 H 0.06 2.60 7.07 -2.39 -0.02 2.58 16 30 H 0.05 1.82 6.52 -2.39 -0.02 1.81 16 31 H 0.08 2.45 5.29 -2.39 -0.01 2.44 16 32 H 0.06 1.36 8.09 -2.39 -0.02 1.34 16 33 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.01 0.25 7.60 -2.38 -0.02 0.23 16 36 H 0.08 2.28 8.04 -2.39 -0.02 2.26 16 37 H 0.34 13.29 8.85 -89.70 -0.79 12.49 16 38 H 0.00 0.17 6.77 -2.39 -0.02 0.15 16 39 H 0.07 4.14 5.73 -2.38 -0.01 4.12 16 40 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -65.48 302.48 -1.41 -66.89 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.22 Total: 18.29 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 4.74 Total: -2.83 kcal Atomic # 7 Polarization: -106.81 SS G_CDS: -6.81 Total: -113.62 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -1.59 Total: -16.15 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -65.48 -1.41 -66.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220566472.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.932 kcal (2) G-P(sol) polarization free energy of solvation -65.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds