Wall clock time and date at job start Mon Mar 30 2020 04:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42900 * 114.00509 * 2 1 4 4 C 1.53001 * 109.47888 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.46785 * 64.99864 * 4 3 2 6 6 C 1.40086 * 110.99791 * 284.90734 * 5 4 3 7 7 C 1.54519 * 111.50432 * 188.14561 * 6 5 4 8 8 H 1.09002 * 109.55816 * 43.82732 * 7 6 5 9 9 C 1.53001 * 109.64481 * 164.09381 * 7 6 5 10 10 C 1.50740 * 108.94292 * 283.98584 * 7 6 5 11 11 N 1.48066 * 112.93969 * 92.65443 * 10 7 6 12 12 C 1.47743 * 113.78853 * 318.28716 * 11 10 7 13 13 C 1.47680 * 111.00036 * 53.54636 * 5 4 3 14 14 H 1.09001 * 109.73942 * 271.69642 * 13 5 4 15 15 C 1.50703 * 109.73596 * 32.34011 * 13 5 4 16 16 H 1.07994 * 120.00346 * 5.53818 * 15 13 5 17 17 C 1.37874 * 119.99968 * 185.53352 * 15 13 5 18 18 N 1.31514 * 120.00520 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99932 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47364 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47032 * 120.00547 * 19 17 15 22 22 H 1.48502 * 109.47459 * 240.00267 * 19 17 15 23 23 H 1.08999 * 109.47338 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46991 * 300.00048 * 1 2 3 25 25 H 1.09005 * 109.46776 * 59.99769 * 1 2 3 26 26 H 1.09003 * 109.46925 * 59.99521 * 3 2 1 27 27 H 1.09003 * 109.46824 * 300.00358 * 3 2 1 28 28 H 1.09002 * 109.46946 * 305.00554 * 4 3 2 29 29 H 1.08990 * 109.47426 * 184.99836 * 4 3 2 30 30 H 1.08998 * 109.07034 * 67.62992 * 6 5 4 31 31 H 1.08994 * 109.01806 * 308.63051 * 6 5 4 32 32 H 1.08997 * 109.46994 * 179.51212 * 9 7 6 33 33 H 1.08996 * 109.47296 * 299.51373 * 9 7 6 34 34 H 1.08999 * 109.47158 * 59.51736 * 9 7 6 35 35 H 1.08996 * 108.78695 * 331.76021 * 10 7 6 36 36 H 1.08997 * 108.69887 * 213.48628 * 10 7 6 37 37 H 1.00903 * 110.99880 * 84.35283 * 11 10 7 38 38 H 1.09006 * 108.99539 * 79.50241 * 12 11 10 39 39 H 1.08997 * 108.99705 * 198.24794 * 12 11 10 40 40 H 0.96993 * 120.00684 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9779 0.5622 -1.2543 6 6 3.7185 -0.8144 -1.2506 7 6 4.3573 -1.5144 -2.4711 8 1 5.3706 -1.1403 -2.6174 9 6 4.3984 -3.0254 -2.2341 10 6 3.5282 -1.2178 -3.6946 11 7 4.0037 -0.0300 -4.4399 12 6 4.3956 1.1001 -3.5726 13 6 3.4378 1.2857 -2.4230 14 1 2.4611 0.8806 -2.6877 15 6 3.3096 2.7519 -2.0992 16 1 3.6808 3.1318 -1.1589 17 6 2.7184 3.6085 -3.0035 18 7 2.2659 3.1460 -4.1485 19 14 2.5588 5.4258 -2.6018 20 1 3.1412 5.6896 -1.2615 21 1 3.2847 6.2240 -3.6222 22 1 1.1240 5.8089 -2.6026 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8463 -0.8900 28 1 3.8508 0.5684 0.8427 29 1 3.9785 2.1765 0.0902 30 1 2.6405 -0.9737 -1.2725 31 1 4.1244 -1.2498 -0.3375 32 1 4.8414 -3.5170 -3.1002 33 1 4.9981 -3.2382 -1.3492 34 1 3.3849 -3.3974 -2.0842 35 1 2.4962 -1.0494 -3.3870 36 1 3.5598 -2.0834 -4.3563 37 1 4.7497 -0.2754 -5.0733 38 1 5.3937 0.9135 -3.1762 39 1 4.4169 2.0131 -4.1676 40 1 1.8497 3.7485 -4.7845 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220566536.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:07 Heat of formation + Delta-G solvation = -25.318541 kcal Electronic energy + Delta-G solvation = -19616.334969 eV Core-core repulsion = 16852.704338 eV Total energy + Delta-G solvation = -2763.630631 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.15824 -36.95406 -34.60580 -33.46146 -31.77661 -29.02243 -27.87491 -26.03652 -25.30836 -23.77405 -23.39144 -21.37724 -19.42352 -18.79807 -16.38535 -15.91393 -15.65994 -15.01500 -14.89086 -14.47988 -14.39572 -13.88044 -13.62800 -12.91122 -12.50911 -12.28271 -12.13155 -11.75447 -11.56003 -11.33247 -11.07623 -10.98703 -10.93124 -10.72673 -10.60676 -10.51860 -10.08745 -10.05844 -9.75711 -9.43765 -8.94104 -8.76668 -8.47101 -7.17987 -6.88938 -6.00577 -4.08137 3.26324 3.35768 3.37825 4.37554 4.42537 5.05866 5.20056 5.34538 5.44906 5.51222 5.67830 5.77722 5.80949 5.96730 6.02238 6.06464 6.10963 6.17936 6.22441 6.25957 6.32116 6.53863 6.63658 6.67451 6.80672 6.88675 6.98015 7.06127 7.11941 7.35848 7.77819 7.81932 7.85765 8.03865 8.24145 8.38338 8.46135 8.86157 9.03079 9.56149 11.04129 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.020024 B = 0.010845 C = 0.008261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.989438 B = 2581.233661 C = 3388.702044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.018 3.982 4 C 0.084 3.916 5 N -0.559 5.559 6 C 0.083 3.917 7 C -0.124 4.124 8 H 0.068 0.932 9 C -0.135 4.135 10 C 0.070 3.930 11 N -0.692 5.692 12 C 0.089 3.911 13 C 0.228 3.772 14 H 0.023 0.977 15 C -0.526 4.526 16 H 0.067 0.933 17 C 0.064 3.936 18 N -0.867 5.867 19 Si 0.886 3.114 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.286 1.286 23 H 0.073 0.927 24 H 0.030 0.970 25 H 0.039 0.961 26 H 0.028 0.972 27 H 0.094 0.906 28 H 0.049 0.951 29 H 0.093 0.907 30 H 0.042 0.958 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.049 0.951 37 H 0.319 0.681 38 H 0.007 0.993 39 H 0.084 0.916 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.458 -6.893 4.795 8.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.309 6.309 3 C -0.059 4.059 4 C -0.044 4.044 5 N -0.282 5.282 6 C -0.047 4.047 7 C -0.145 4.145 8 H 0.087 0.913 9 C -0.194 4.194 10 C -0.059 4.059 11 N -0.320 5.320 12 C -0.039 4.039 13 C 0.122 3.878 14 H 0.041 0.959 15 C -0.564 4.564 16 H 0.085 0.915 17 C -0.140 4.140 18 N -0.503 5.503 19 Si 0.713 3.287 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.212 1.212 23 H 0.092 0.908 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.046 0.954 27 H 0.112 0.888 28 H 0.067 0.933 29 H 0.111 0.889 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.134 0.866 38 H 0.025 0.975 39 H 0.102 0.898 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.322 -6.714 4.493 8.086 hybrid contribution -0.352 0.855 0.516 1.059 sum -0.030 -5.860 5.009 7.709 Atomic orbital electron populations 1.22600 0.82884 1.01380 0.99522 1.87887 1.18373 1.29412 1.95256 1.23785 0.96438 0.84026 1.01688 1.21962 0.90474 1.00432 0.91504 1.59277 1.62950 1.02179 1.03830 1.21064 0.98708 0.89281 0.95650 1.21727 1.00682 0.94616 0.97494 0.91345 1.21732 1.01233 0.95767 1.00650 1.21760 0.99253 0.91936 0.92980 1.60545 1.42339 1.07099 1.22047 1.21873 0.95640 0.91932 0.94439 1.18922 0.92439 0.92329 0.84066 0.95894 1.21327 1.39301 0.92018 1.03787 0.91455 1.24991 0.95585 0.98330 0.95090 1.70074 1.38176 1.34577 1.07478 0.86643 0.77627 0.85879 0.78506 1.19743 1.20984 1.21204 0.90795 0.95124 0.94224 0.95365 0.88810 0.93268 0.88921 0.94024 0.93667 0.93314 0.93249 0.92969 0.91935 0.93284 0.86622 0.97513 0.89811 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.39 -7.51 7.84 -35.23 -0.28 -7.79 16 3 C 0.02 0.36 5.53 37.16 0.21 0.56 16 4 C 0.08 1.69 5.31 -3.82 -0.02 1.67 16 5 N -0.56 -12.07 4.13 -233.08 -0.96 -13.03 16 6 C 0.08 1.63 3.84 -6.55 -0.03 1.60 16 7 C -0.12 -2.22 2.47 -90.95 -0.22 -2.44 16 8 H 0.07 1.31 7.19 -51.93 -0.37 0.93 16 9 C -0.14 -1.94 8.92 37.16 0.33 -1.61 16 10 C 0.07 1.35 5.57 -4.31 -0.02 1.33 16 11 N -0.69 -14.79 6.94 -114.72 -0.80 -15.59 16 12 C 0.09 2.13 5.34 -4.47 -0.02 2.11 16 13 C 0.23 5.55 0.87 -69.55 -0.06 5.49 16 14 H 0.02 0.66 6.51 -51.93 -0.34 0.32 16 15 C -0.53 -13.49 5.84 -34.44 -0.20 -13.69 16 16 H 0.07 1.70 5.34 -52.49 -0.28 1.42 16 17 C 0.06 1.69 5.06 -17.82 -0.09 1.60 16 18 N -0.87 -24.12 12.22 55.43 0.68 -23.44 16 19 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 23 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.09 2.19 5.34 -51.93 -0.28 1.91 16 28 H 0.05 0.90 7.75 -51.93 -0.40 0.50 16 29 H 0.09 1.89 5.99 -51.93 -0.31 1.58 16 30 H 0.04 0.89 5.13 -51.93 -0.27 0.62 16 31 H 0.04 0.85 7.67 -51.93 -0.40 0.45 16 32 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 1.36 6.53 -51.93 -0.34 1.02 16 36 H 0.05 0.82 7.68 -51.93 -0.40 0.43 16 37 H 0.32 6.02 8.91 -39.29 -0.35 5.67 16 38 H 0.01 0.16 7.20 -51.93 -0.37 -0.22 16 39 H 0.08 2.25 6.55 -51.93 -0.34 1.91 16 40 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 294.76 15.07 4.44 4.44 Total: -1.00 -27.61 294.76 -7.49 -35.10 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.54 Total: 6.60 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 0.98 Total: -1.74 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: -1.08 Total: -52.06 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -0.28 Total: -7.79 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -27.61 -7.49 -35.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220566536.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.785 kcal (2) G-P(sol) polarization free energy of solvation -27.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds