Wall clock time and date at job start Mon Mar 30 2020 04:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42900 * 114.00509 * 2 1 4 4 C 1.53001 * 109.47888 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.46785 * 64.99864 * 4 3 2 6 6 C 1.40086 * 110.99791 * 284.90734 * 5 4 3 7 7 C 1.54519 * 111.50432 * 188.14561 * 6 5 4 8 8 H 1.09002 * 109.55816 * 43.82732 * 7 6 5 9 9 C 1.53001 * 109.64481 * 164.09381 * 7 6 5 10 10 C 1.50740 * 108.94292 * 283.98584 * 7 6 5 11 11 N 1.48066 * 112.93969 * 92.65443 * 10 7 6 12 12 C 1.47743 * 113.78853 * 318.28716 * 11 10 7 13 13 C 1.47680 * 111.00036 * 53.54636 * 5 4 3 14 14 H 1.09001 * 109.73942 * 271.69642 * 13 5 4 15 15 C 1.50703 * 109.73596 * 32.34011 * 13 5 4 16 16 H 1.07994 * 120.00346 * 5.53818 * 15 13 5 17 17 C 1.37874 * 119.99968 * 185.53352 * 15 13 5 18 18 N 1.31514 * 120.00520 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99932 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47364 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47032 * 120.00547 * 19 17 15 22 22 H 1.48502 * 109.47459 * 240.00267 * 19 17 15 23 23 H 1.08999 * 109.47338 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46991 * 300.00048 * 1 2 3 25 25 H 1.09005 * 109.46776 * 59.99769 * 1 2 3 26 26 H 1.09003 * 109.46925 * 59.99521 * 3 2 1 27 27 H 1.09003 * 109.46824 * 300.00358 * 3 2 1 28 28 H 1.09002 * 109.46946 * 305.00554 * 4 3 2 29 29 H 1.08990 * 109.47426 * 184.99836 * 4 3 2 30 30 H 1.08998 * 109.07034 * 67.62992 * 6 5 4 31 31 H 1.08994 * 109.01806 * 308.63051 * 6 5 4 32 32 H 1.08997 * 109.46994 * 179.51212 * 9 7 6 33 33 H 1.08996 * 109.47296 * 299.51373 * 9 7 6 34 34 H 1.08999 * 109.47158 * 59.51736 * 9 7 6 35 35 H 1.08996 * 108.78695 * 331.76021 * 10 7 6 36 36 H 1.08997 * 108.69887 * 213.48628 * 10 7 6 37 37 H 1.00903 * 110.99880 * 84.35283 * 11 10 7 38 38 H 1.09006 * 108.99539 * 79.50241 * 12 11 10 39 39 H 1.08997 * 108.99705 * 198.24794 * 12 11 10 40 40 H 0.96993 * 120.00684 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9779 0.5622 -1.2543 6 6 3.7185 -0.8144 -1.2506 7 6 4.3573 -1.5144 -2.4711 8 1 5.3706 -1.1403 -2.6174 9 6 4.3984 -3.0254 -2.2341 10 6 3.5282 -1.2178 -3.6946 11 7 4.0037 -0.0300 -4.4399 12 6 4.3956 1.1001 -3.5726 13 6 3.4378 1.2857 -2.4230 14 1 2.4611 0.8806 -2.6877 15 6 3.3096 2.7519 -2.0992 16 1 3.6808 3.1318 -1.1589 17 6 2.7184 3.6085 -3.0035 18 7 2.2659 3.1460 -4.1485 19 14 2.5588 5.4258 -2.6018 20 1 3.1412 5.6896 -1.2615 21 1 3.2847 6.2240 -3.6222 22 1 1.1240 5.8089 -2.6026 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8463 -0.8900 28 1 3.8508 0.5684 0.8427 29 1 3.9785 2.1765 0.0902 30 1 2.6405 -0.9737 -1.2725 31 1 4.1244 -1.2498 -0.3375 32 1 4.8414 -3.5170 -3.1002 33 1 4.9981 -3.2382 -1.3492 34 1 3.3849 -3.3974 -2.0842 35 1 2.4962 -1.0494 -3.3870 36 1 3.5598 -2.0834 -4.3563 37 1 4.7497 -0.2754 -5.0733 38 1 5.3937 0.9135 -3.1762 39 1 4.4169 2.0131 -4.1676 40 1 1.8497 3.7485 -4.7845 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220566536.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:06 Heat of formation + Delta-G solvation = -46.113476 kcal Electronic energy + Delta-G solvation = -19617.236705 eV Core-core repulsion = 16852.704338 eV Total energy + Delta-G solvation = -2764.532367 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.82881 -38.47132 -36.23192 -35.27600 -33.56108 -30.64739 -29.61178 -27.47258 -26.91899 -25.36747 -25.21530 -23.01432 -20.99539 -20.61257 -18.30975 -17.50275 -17.26074 -16.77053 -16.54236 -16.09238 -15.96257 -15.64729 -15.15488 -14.47591 -14.12171 -13.86638 -13.64777 -13.40364 -13.15382 -12.88994 -12.73735 -12.65232 -12.55492 -12.34199 -12.21028 -12.11676 -11.89624 -11.64915 -11.46863 -11.09854 -10.77174 -10.50469 -10.39101 -8.91001 -8.64308 -8.04041 -6.16006 1.41244 1.45061 1.54346 2.44346 2.95398 3.23142 3.48461 3.62046 4.01033 4.08249 4.30111 4.38827 4.42394 4.53033 4.57135 4.64313 4.70766 4.75466 4.77337 4.87188 4.92360 4.97062 5.01866 5.11891 5.20830 5.24904 5.30993 5.39655 5.43636 5.57585 5.79344 5.88538 6.18963 6.31744 6.39647 6.53761 6.83189 7.03182 7.10529 7.52182 9.01126 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.020024 B = 0.010845 C = 0.008261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.989438 B = 2581.233661 C = 3388.702044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.402 6.402 3 C 0.028 3.972 4 C 0.081 3.919 5 N -0.562 5.562 6 C 0.082 3.918 7 C -0.117 4.117 8 H 0.059 0.941 9 C -0.127 4.127 10 C 0.076 3.924 11 N -0.706 5.706 12 C 0.104 3.896 13 C 0.244 3.756 14 H -0.021 1.021 15 C -0.527 4.527 16 H 0.071 0.929 17 C 0.018 3.982 18 N -0.901 5.901 19 Si 0.946 3.054 20 H -0.262 1.262 21 H -0.285 1.285 22 H -0.287 1.287 23 H 0.099 0.901 24 H 0.051 0.949 25 H 0.021 0.979 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.026 0.974 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.031 0.969 36 H 0.078 0.922 37 H 0.334 0.666 38 H 0.007 0.993 39 H 0.049 0.951 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.013 -7.932 6.112 10.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.322 6.322 3 C -0.050 4.050 4 C -0.046 4.046 5 N -0.285 5.285 6 C -0.047 4.047 7 C -0.138 4.138 8 H 0.077 0.923 9 C -0.185 4.185 10 C -0.053 4.053 11 N -0.336 5.336 12 C -0.025 4.025 13 C 0.138 3.862 14 H -0.003 1.003 15 C -0.566 4.566 16 H 0.089 0.911 17 C -0.183 4.183 18 N -0.539 5.539 19 Si 0.773 3.227 20 H -0.186 1.186 21 H -0.211 1.211 22 H -0.213 1.213 23 H 0.117 0.883 24 H 0.070 0.930 25 H 0.039 0.961 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.049 0.951 36 H 0.096 0.904 37 H 0.151 0.849 38 H 0.026 0.974 39 H 0.067 0.933 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.886 -7.769 5.829 9.753 hybrid contribution -0.573 1.111 0.129 1.257 sum 0.313 -6.658 5.958 8.940 Atomic orbital electron populations 1.22780 0.81170 1.03127 0.99624 1.87854 1.20241 1.28771 1.95285 1.23497 0.96471 0.84349 1.00678 1.22021 0.90596 1.00522 0.91499 1.59305 1.62540 1.03164 1.03515 1.21127 0.98052 0.88312 0.97247 1.21662 0.99245 0.97143 0.95764 0.92286 1.21667 1.02034 0.92636 1.02175 1.21723 0.97600 0.91774 0.94211 1.60343 1.43101 1.07721 1.22467 1.21528 0.95463 0.91633 0.93917 1.18564 0.90419 0.91875 0.85390 1.00301 1.21593 1.38475 0.92849 1.03641 0.91100 1.25675 0.95490 1.02154 0.94977 1.70212 1.39414 1.35760 1.08493 0.85682 0.77313 0.81165 0.78558 1.18598 1.21121 1.21293 0.88301 0.92997 0.96064 0.93251 0.92811 0.90954 0.89557 0.95614 0.92153 0.91410 0.91922 0.92546 0.95090 0.90355 0.84896 0.97440 0.93294 0.93392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 11.01 113.37 1.25 2.15 16 2 O -0.40 -15.18 7.84 -148.98 -1.17 -16.34 16 3 C 0.03 1.09 5.53 71.98 0.40 1.49 16 4 C 0.08 3.18 5.31 86.30 0.46 3.64 16 5 N -0.56 -24.13 4.13 -891.33 -3.68 -27.81 16 6 C 0.08 3.14 3.84 88.05 0.34 3.48 16 7 C -0.12 -4.00 2.47 -11.01 -0.03 -4.03 16 8 H 0.06 2.15 7.19 -2.39 -0.02 2.13 16 9 C -0.13 -3.22 8.92 71.98 0.64 -2.58 16 10 C 0.08 2.88 5.57 85.34 0.48 3.35 16 11 N -0.71 -30.45 6.94 -516.87 -3.58 -34.04 16 12 C 0.10 5.06 5.34 85.42 0.46 5.51 16 13 C 0.24 12.17 0.87 43.30 0.04 12.21 16 14 H -0.02 -1.21 6.51 -2.39 -0.02 -1.22 16 15 C -0.53 -27.58 5.84 25.60 0.15 -27.43 16 16 H 0.07 3.60 5.34 -2.91 -0.02 3.58 16 17 C 0.02 0.96 5.06 84.65 0.43 1.39 16 18 N -0.90 -51.87 12.22 21.45 0.26 -51.61 16 19 Si 0.95 42.61 29.54 68.60 2.03 44.64 16 20 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 21 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 23 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 24 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 26 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.05 2.58 5.34 -2.39 -0.01 2.57 16 28 H 0.07 2.49 7.75 -2.39 -0.02 2.48 16 29 H 0.09 3.45 5.99 -2.39 -0.01 3.44 16 30 H 0.03 1.10 5.13 -2.39 -0.01 1.08 16 31 H 0.06 2.12 7.67 -2.39 -0.02 2.10 16 32 H 0.07 1.48 8.08 -2.39 -0.02 1.46 16 33 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.03 1.36 6.53 -2.39 -0.02 1.35 16 36 H 0.08 2.48 7.68 -2.39 -0.02 2.46 16 37 H 0.33 12.49 8.91 -89.69 -0.80 11.69 16 38 H 0.01 0.36 7.20 -2.38 -0.02 0.34 16 39 H 0.05 2.71 6.55 -2.39 -0.02 2.70 16 40 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -60.77 294.76 -1.31 -62.08 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.22 Total: 23.88 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 4.60 Total: -0.80 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -7.00 Total: -113.45 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -1.17 Total: -16.34 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -60.77 -1.31 -62.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220566536.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.969 kcal (2) G-P(sol) polarization free energy of solvation -60.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds