Wall clock time and date at job start Mon Mar 30 2020 04:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00004 * 2 1 4 4 C 1.53000 * 109.47358 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.47225 * 79.01871 * 4 3 2 6 6 C 1.48106 * 111.00003 * 307.14011 * 5 4 3 7 7 C 1.46140 * 112.18976 * 156.49632 * 6 5 4 8 8 H 1.09003 * 108.98799 * 300.31939 * 7 6 5 9 9 C 1.52996 * 108.99196 * 181.48886 * 7 6 5 10 10 C 1.54241 * 111.90663 * 60.86089 * 7 6 5 11 11 N 1.44253 * 108.64349 * 281.37865 * 10 7 6 12 12 C 1.48197 * 114.26412 * 93.39872 * 11 10 7 13 13 C 1.44256 * 110.99886 * 184.49617 * 5 4 3 14 14 H 1.09000 * 108.86484 * 96.33853 * 13 5 4 15 15 C 1.50696 * 108.86575 * 337.92275 * 13 5 4 16 16 H 1.08002 * 120.00123 * 4.95902 * 15 13 5 17 17 C 1.37878 * 120.00013 * 184.95462 * 15 13 5 18 18 N 1.31509 * 120.00037 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00227 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47045 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46869 * 119.99917 * 19 17 15 22 22 H 1.48496 * 109.47807 * 240.00287 * 19 17 15 23 23 H 1.08996 * 109.47525 * 60.00067 * 1 2 3 24 24 H 1.08997 * 109.47224 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47226 * 299.99697 * 1 2 3 26 26 H 1.09006 * 109.47111 * 300.00658 * 3 2 1 27 27 H 1.08996 * 109.47278 * 60.00158 * 3 2 1 28 28 H 1.08992 * 109.47145 * 199.02241 * 4 3 2 29 29 H 1.08997 * 109.46765 * 319.02057 * 4 3 2 30 30 H 1.08997 * 108.93549 * 277.19120 * 6 5 4 31 31 H 1.09001 * 108.94102 * 35.79727 * 6 5 4 32 32 H 1.09001 * 109.47329 * 59.99906 * 9 7 6 33 33 H 1.09007 * 109.46860 * 179.97438 * 9 7 6 34 34 H 1.08996 * 109.47167 * 299.99676 * 9 7 6 35 35 H 1.08995 * 109.61382 * 41.13042 * 10 7 6 36 36 H 1.09006 * 109.60951 * 161.64024 * 10 7 6 37 37 H 1.00900 * 111.00191 * 326.95214 * 11 10 7 38 38 H 1.09003 * 108.82757 * 78.99149 * 12 11 10 39 39 H 1.09007 * 108.82062 * 197.28689 * 12 11 10 40 40 H 0.97004 * 120.00600 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.0022 0.8833 -1.3605 6 6 3.2967 -0.2950 -1.9149 7 6 3.3017 -0.3042 -3.3763 8 1 2.8092 0.5983 -3.7383 9 6 2.5251 -1.5268 -3.8692 10 6 4.7339 -0.3557 -3.9465 11 7 5.3067 0.9663 -3.8747 12 6 6.0961 1.2221 -2.6469 13 6 5.4271 0.6589 -1.3801 14 1 5.6158 -0.4134 -1.3290 15 6 6.0407 1.3171 -0.1713 16 1 5.4074 1.7770 0.5729 17 6 7.4106 1.3321 -0.0154 18 7 8.1817 0.7724 -0.9218 19 14 8.1712 2.1485 1.4827 20 1 7.0957 2.7001 2.3454 21 1 8.9543 1.1459 2.2487 22 1 9.0683 3.2481 1.0453 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6885 1.8464 -0.8900 27 1 1.6886 1.8463 0.8900 28 1 3.9744 2.1244 0.3343 29 1 3.8366 0.3825 0.6730 30 1 3.7834 -1.2009 -1.5538 31 1 2.2645 -0.2864 -1.5648 32 1 1.4988 -1.4763 -3.5054 33 1 2.5236 -1.5410 -4.9592 34 1 2.9993 -2.4338 -3.4943 35 1 5.3369 -1.0480 -3.3591 36 1 4.7025 -0.6847 -4.9853 37 1 4.5995 1.6743 -4.0039 38 1 7.0789 0.7642 -2.7588 39 1 6.2235 2.2982 -2.5285 40 1 9.1455 0.7832 -0.8124 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220566599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:10 Heat of formation + Delta-G solvation = -20.008495 kcal Electronic energy + Delta-G solvation = -19277.254919 eV Core-core repulsion = 16513.854549 eV Total energy + Delta-G solvation = -2763.400370 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.11383 -37.40547 -34.78986 -33.46210 -31.92552 -29.41926 -27.41850 -26.37996 -25.32067 -24.27635 -23.12814 -21.09383 -19.77790 -19.01021 -16.61054 -16.29442 -15.93496 -15.16278 -14.79692 -14.54029 -14.18584 -13.97107 -13.61559 -13.23368 -12.43721 -12.29324 -12.08082 -11.98439 -11.68353 -11.63883 -11.24984 -11.19013 -10.96191 -10.87258 -10.59590 -10.46214 -9.98554 -9.94814 -9.88137 -9.52035 -9.03135 -8.82445 -8.49757 -7.33975 -7.00086 -6.04949 -4.10370 3.26222 3.34590 3.36711 4.03881 4.37164 4.84469 5.23541 5.30562 5.36048 5.39370 5.55413 5.59852 5.65183 5.68237 5.70502 5.87108 5.96798 6.04944 6.21922 6.30419 6.41173 6.42672 6.53379 6.65834 6.74245 6.89745 6.91240 6.99546 7.17700 7.41426 7.47736 7.71718 7.87308 8.03601 8.26355 8.41465 8.49597 8.68990 8.99150 9.55062 11.00217 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.020476 B = 0.009469 C = 0.006873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.150692 B = 2956.417977 C = 4072.975727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.384 6.384 3 C 0.054 3.946 4 C 0.073 3.927 5 N -0.529 5.529 6 C 0.036 3.964 7 C -0.116 4.116 8 H 0.064 0.936 9 C -0.139 4.139 10 C 0.080 3.920 11 N -0.705 5.705 12 C 0.086 3.914 13 C 0.186 3.814 14 H -0.002 1.002 15 C -0.538 4.538 16 H 0.075 0.925 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.895 3.105 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.283 1.283 23 H 0.038 0.962 24 H 0.079 0.921 25 H 0.036 0.964 26 H 0.054 0.946 27 H 0.045 0.955 28 H 0.100 0.900 29 H 0.041 0.959 30 H 0.021 0.979 31 H 0.094 0.906 32 H 0.046 0.954 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.052 0.948 37 H 0.328 0.672 38 H 0.097 0.903 39 H 0.047 0.953 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.175 -0.927 -1.378 12.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.303 6.303 3 C -0.022 4.022 4 C -0.055 4.055 5 N -0.253 5.253 6 C -0.092 4.092 7 C -0.137 4.137 8 H 0.083 0.917 9 C -0.198 4.198 10 C -0.051 4.051 11 N -0.333 5.333 12 C -0.042 4.042 13 C 0.077 3.923 14 H 0.015 0.985 15 C -0.576 4.576 16 H 0.092 0.908 17 C -0.139 4.139 18 N -0.523 5.523 19 Si 0.723 3.277 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.209 1.209 23 H 0.056 0.944 24 H 0.098 0.902 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.117 0.883 29 H 0.060 0.940 30 H 0.039 0.961 31 H 0.111 0.889 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.144 0.856 38 H 0.115 0.885 39 H 0.066 0.934 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.384 -0.897 -2.042 11.600 hybrid contribution -0.188 -0.014 2.005 2.014 sum -11.572 -0.911 -0.037 11.608 Atomic orbital electron populations 1.22678 0.82460 1.02116 0.99577 1.87991 1.18678 1.29237 1.94376 1.22916 0.95802 0.83861 0.99649 1.22203 0.89067 1.02487 0.91740 1.61783 1.07534 1.36289 1.19706 1.21562 1.01219 0.92126 0.94264 1.20902 0.97999 0.97872 0.96902 0.91728 1.21772 0.99446 0.98271 1.00280 1.21668 0.92093 0.92790 0.98550 1.59716 1.30082 1.02886 1.40652 1.22625 0.97043 0.99947 0.84598 1.19589 0.82148 0.95111 0.95423 0.98453 1.21818 0.91952 1.37443 1.06397 0.90771 1.24998 0.97382 0.95106 0.96372 1.69910 1.04437 1.44025 1.33950 0.86494 0.79282 0.79173 0.82778 1.19849 1.21130 1.20920 0.94384 0.90232 0.94536 0.92763 0.93676 0.88267 0.94040 0.96101 0.88860 0.93442 0.93062 0.93100 0.92158 0.92952 0.85559 0.88517 0.93393 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.38 -6.12 7.85 -35.23 -0.28 -6.40 16 3 C 0.05 0.86 5.54 37.16 0.21 1.07 16 4 C 0.07 1.45 4.18 -3.82 -0.02 1.44 16 5 N -0.53 -11.30 4.49 -232.53 -1.04 -12.34 16 6 C 0.04 0.69 3.85 -6.42 -0.02 0.66 16 7 C -0.12 -2.00 2.50 -93.23 -0.23 -2.24 16 8 H 0.06 1.11 7.62 -51.93 -0.40 0.72 16 9 C -0.14 -1.98 9.02 37.16 0.34 -1.64 16 10 C 0.08 1.53 5.63 -4.59 -0.03 1.51 16 11 N -0.71 -14.83 6.59 -113.46 -0.75 -15.58 16 12 C 0.09 2.13 5.37 -2.62 -0.01 2.11 16 13 C 0.19 4.65 1.86 -69.79 -0.13 4.52 16 14 H 0.00 -0.06 6.55 -51.93 -0.34 -0.40 16 15 C -0.54 -14.29 7.64 -34.44 -0.26 -14.55 16 16 H 0.07 1.91 4.67 -52.49 -0.25 1.66 16 17 C 0.06 1.74 5.27 -17.82 -0.09 1.64 16 18 N -0.88 -24.93 10.97 55.43 0.61 -24.32 16 19 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.10 2.04 6.06 -51.93 -0.31 1.73 16 29 H 0.04 0.91 7.84 -51.93 -0.41 0.51 16 30 H 0.02 0.45 7.38 -51.93 -0.38 0.07 16 31 H 0.09 1.71 4.17 -51.98 -0.22 1.49 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.65 8.09 -51.93 -0.42 0.23 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 1.31 6.96 -51.93 -0.36 0.94 16 36 H 0.05 0.91 7.97 -51.93 -0.41 0.50 16 37 H 0.33 6.53 8.08 -39.29 -0.32 6.21 16 38 H 0.10 2.67 6.26 -51.93 -0.33 2.35 16 39 H 0.05 1.24 7.97 -51.93 -0.41 0.83 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 297.53 15.07 4.48 4.48 Total: -1.00 -27.90 297.53 -7.79 -35.69 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -6.65 Total: 6.54 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 0.85 Total: -4.04 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: -1.18 Total: -52.24 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.28 Total: -6.40 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.90 -7.79 -35.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220566599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.685 kcal (2) G-P(sol) polarization free energy of solvation -27.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds