Wall clock time and date at job start Mon Mar 30 2020 04:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00004 * 2 1 4 4 C 1.53000 * 109.47358 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.47225 * 79.01871 * 4 3 2 6 6 C 1.48106 * 111.00003 * 307.14011 * 5 4 3 7 7 C 1.46140 * 112.18976 * 156.49632 * 6 5 4 8 8 H 1.09003 * 108.98799 * 300.31939 * 7 6 5 9 9 C 1.52996 * 108.99196 * 181.48886 * 7 6 5 10 10 C 1.54241 * 111.90663 * 60.86089 * 7 6 5 11 11 N 1.44253 * 108.64349 * 281.37865 * 10 7 6 12 12 C 1.48197 * 114.26412 * 93.39872 * 11 10 7 13 13 C 1.44256 * 110.99886 * 184.49617 * 5 4 3 14 14 H 1.09000 * 108.86484 * 96.33853 * 13 5 4 15 15 C 1.50696 * 108.86575 * 337.92275 * 13 5 4 16 16 H 1.08002 * 120.00123 * 4.95902 * 15 13 5 17 17 C 1.37878 * 120.00013 * 184.95462 * 15 13 5 18 18 N 1.31509 * 120.00037 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00227 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47045 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46869 * 119.99917 * 19 17 15 22 22 H 1.48496 * 109.47807 * 240.00287 * 19 17 15 23 23 H 1.08996 * 109.47525 * 60.00067 * 1 2 3 24 24 H 1.08997 * 109.47224 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47226 * 299.99697 * 1 2 3 26 26 H 1.09006 * 109.47111 * 300.00658 * 3 2 1 27 27 H 1.08996 * 109.47278 * 60.00158 * 3 2 1 28 28 H 1.08992 * 109.47145 * 199.02241 * 4 3 2 29 29 H 1.08997 * 109.46765 * 319.02057 * 4 3 2 30 30 H 1.08997 * 108.93549 * 277.19120 * 6 5 4 31 31 H 1.09001 * 108.94102 * 35.79727 * 6 5 4 32 32 H 1.09001 * 109.47329 * 59.99906 * 9 7 6 33 33 H 1.09007 * 109.46860 * 179.97438 * 9 7 6 34 34 H 1.08996 * 109.47167 * 299.99676 * 9 7 6 35 35 H 1.08995 * 109.61382 * 41.13042 * 10 7 6 36 36 H 1.09006 * 109.60951 * 161.64024 * 10 7 6 37 37 H 1.00900 * 111.00191 * 326.95214 * 11 10 7 38 38 H 1.09003 * 108.82757 * 78.99149 * 12 11 10 39 39 H 1.09007 * 108.82062 * 197.28689 * 12 11 10 40 40 H 0.97004 * 120.00600 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.0022 0.8833 -1.3605 6 6 3.2967 -0.2950 -1.9149 7 6 3.3017 -0.3042 -3.3763 8 1 2.8092 0.5983 -3.7383 9 6 2.5251 -1.5268 -3.8692 10 6 4.7339 -0.3557 -3.9465 11 7 5.3067 0.9663 -3.8747 12 6 6.0961 1.2221 -2.6469 13 6 5.4271 0.6589 -1.3801 14 1 5.6158 -0.4134 -1.3290 15 6 6.0407 1.3171 -0.1713 16 1 5.4074 1.7770 0.5729 17 6 7.4106 1.3321 -0.0154 18 7 8.1817 0.7724 -0.9218 19 14 8.1712 2.1485 1.4827 20 1 7.0957 2.7001 2.3454 21 1 8.9543 1.1459 2.2487 22 1 9.0683 3.2481 1.0453 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6885 1.8464 -0.8900 27 1 1.6886 1.8463 0.8900 28 1 3.9744 2.1244 0.3343 29 1 3.8366 0.3825 0.6730 30 1 3.7834 -1.2009 -1.5538 31 1 2.2645 -0.2864 -1.5648 32 1 1.4988 -1.4763 -3.5054 33 1 2.5236 -1.5410 -4.9592 34 1 2.9993 -2.4338 -3.4943 35 1 5.3369 -1.0480 -3.3591 36 1 4.7025 -0.6847 -4.9853 37 1 4.5995 1.6743 -4.0039 38 1 7.0789 0.7642 -2.7588 39 1 6.2235 2.2982 -2.5285 40 1 9.1455 0.7832 -0.8124 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220566599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:09 Heat of formation + Delta-G solvation = -41.181195 kcal Electronic energy + Delta-G solvation = -19278.173036 eV Core-core repulsion = 16513.854549 eV Total energy + Delta-G solvation = -2764.318487 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.73363 -38.70020 -36.45300 -35.25013 -33.77130 -30.95156 -29.11410 -27.63516 -26.92011 -25.82024 -24.88127 -22.65609 -21.40346 -20.85970 -18.31180 -17.79992 -17.39375 -16.70963 -16.47751 -16.17661 -15.69392 -15.56749 -15.18395 -14.76981 -14.07025 -13.89474 -13.66207 -13.52429 -13.19593 -13.03955 -12.87302 -12.77879 -12.54265 -12.33730 -12.19989 -12.00433 -11.84054 -11.52520 -11.43944 -11.33623 -10.84098 -10.56842 -10.30509 -9.12533 -8.81850 -8.13198 -6.26129 1.38785 1.40486 1.51406 2.39063 2.88995 3.10743 3.27009 3.84904 3.90071 4.14844 4.26446 4.34479 4.44304 4.51399 4.59353 4.62885 4.69544 4.70662 4.81153 4.84183 4.87088 4.91149 5.02148 5.08659 5.13171 5.23508 5.36704 5.39602 5.42858 5.51643 5.71423 5.82116 6.04648 6.28465 6.41693 6.47767 6.68252 6.90702 6.97533 7.43473 8.91163 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.020476 B = 0.009469 C = 0.006873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.150692 B = 2956.417977 C = 4072.975727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.410 6.410 3 C 0.067 3.933 4 C 0.072 3.928 5 N -0.526 5.526 6 C 0.042 3.958 7 C -0.112 4.112 8 H 0.077 0.923 9 C -0.132 4.132 10 C 0.080 3.920 11 N -0.701 5.701 12 C 0.105 3.895 13 C 0.198 3.802 14 H -0.050 1.050 15 C -0.554 4.554 16 H 0.082 0.918 17 C 0.013 3.987 18 N -0.915 5.915 19 Si 0.960 3.040 20 H -0.263 1.263 21 H -0.286 1.286 22 H -0.279 1.279 23 H 0.051 0.949 24 H 0.093 0.907 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.090 0.910 29 H 0.012 0.988 30 H -0.013 1.013 31 H 0.114 0.886 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.042 0.958 35 H 0.025 0.975 36 H 0.080 0.920 37 H 0.338 0.662 38 H 0.062 0.938 39 H 0.030 0.970 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.606 -0.222 -1.478 14.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.330 6.330 3 C -0.009 4.009 4 C -0.056 4.056 5 N -0.250 5.250 6 C -0.085 4.085 7 C -0.132 4.132 8 H 0.095 0.905 9 C -0.190 4.190 10 C -0.050 4.050 11 N -0.330 5.330 12 C -0.025 4.025 13 C 0.089 3.911 14 H -0.033 1.033 15 C -0.592 4.592 16 H 0.100 0.900 17 C -0.187 4.187 18 N -0.554 5.554 19 Si 0.786 3.214 20 H -0.187 1.187 21 H -0.212 1.212 22 H -0.205 1.205 23 H 0.070 0.930 24 H 0.112 0.888 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.088 0.912 28 H 0.108 0.892 29 H 0.030 0.970 30 H 0.006 0.994 31 H 0.131 0.869 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.044 0.956 36 H 0.098 0.902 37 H 0.156 0.844 38 H 0.080 0.920 39 H 0.049 0.951 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.854 -0.193 -2.148 14.021 hybrid contribution 0.508 -0.293 2.029 2.112 sum -13.346 -0.486 -0.120 13.356 Atomic orbital electron populations 1.22920 0.79775 1.03605 1.00992 1.87914 1.21496 1.29053 1.94563 1.22679 0.92482 0.84401 1.01332 1.22150 0.92550 1.00738 0.90182 1.61828 1.05494 1.36971 1.20713 1.21650 1.01407 0.89752 0.95690 1.20843 0.97027 1.00152 0.95184 0.90491 1.21709 0.99643 0.96023 1.01631 1.21729 0.92828 0.90850 0.99620 1.59635 1.30713 1.04221 1.38430 1.22164 0.96246 0.98049 0.86001 1.19334 0.84563 0.91905 0.95331 1.03300 1.22225 0.92494 1.37337 1.07167 0.90045 1.25832 0.97961 0.95708 0.99160 1.70078 1.04542 1.45118 1.35664 0.85463 0.78470 0.78086 0.79376 1.18668 1.21171 1.20476 0.93010 0.88820 0.93021 0.91763 0.91181 0.89225 0.97004 0.99448 0.86889 0.91645 0.90875 0.93854 0.95636 0.90231 0.84362 0.91954 0.95079 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 11.01 113.37 1.25 1.70 16 2 O -0.41 -12.18 7.85 -148.98 -1.17 -13.35 16 3 C 0.07 2.01 5.54 71.98 0.40 2.41 16 4 C 0.07 2.86 4.18 86.30 0.36 3.22 16 5 N -0.53 -22.78 4.49 -889.58 -3.99 -26.77 16 6 C 0.04 1.62 3.85 83.96 0.32 1.94 16 7 C -0.11 -3.68 2.50 -12.48 -0.03 -3.71 16 8 H 0.08 2.41 7.62 -2.39 -0.02 2.39 16 9 C -0.13 -3.38 9.02 71.98 0.65 -2.73 16 10 C 0.08 3.06 5.63 87.22 0.49 3.55 16 11 N -0.70 -29.63 6.59 -512.87 -3.38 -33.01 16 12 C 0.10 5.39 5.37 86.37 0.46 5.85 16 13 C 0.20 10.38 1.86 44.98 0.08 10.46 16 14 H -0.05 -3.07 6.55 -2.39 -0.02 -3.09 16 15 C -0.55 -30.43 7.64 25.60 0.20 -30.24 16 16 H 0.08 4.27 4.67 -2.91 -0.01 4.26 16 17 C 0.01 0.73 5.27 84.66 0.45 1.18 16 18 N -0.91 -53.68 10.97 21.45 0.24 -53.45 16 19 Si 0.96 43.78 29.54 68.60 2.03 45.80 16 20 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 21 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 23 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 26 H 0.06 1.80 8.13 -2.38 -0.02 1.79 16 27 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.09 3.70 6.06 -2.39 -0.01 3.69 16 29 H 0.01 0.53 7.84 -2.39 -0.02 0.51 16 30 H -0.01 -0.59 7.38 -2.39 -0.02 -0.60 16 31 H 0.11 3.95 4.17 -3.25 -0.01 3.93 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 1.58 8.09 -2.38 -0.02 1.57 16 34 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.02 1.14 6.96 -2.39 -0.02 1.13 16 36 H 0.08 2.63 7.97 -2.38 -0.02 2.61 16 37 H 0.34 13.13 8.08 -89.69 -0.72 12.40 16 38 H 0.06 3.65 6.26 -2.39 -0.01 3.63 16 39 H 0.03 1.66 7.97 -2.38 -0.02 1.64 16 40 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -63.24 297.53 -1.36 -64.61 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.29 Total: 22.54 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: 4.63 Total: -6.37 kcal Atomic # 7 Polarization: -106.09 SS G_CDS: -7.14 Total: -113.23 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -1.17 Total: -13.35 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -63.24 -1.36 -64.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220566599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.424 kcal (2) G-P(sol) polarization free energy of solvation -63.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds