Wall clock time and date at job start Mon Mar 30 2020 04:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00215 * 2 1 4 4 C 1.53004 * 109.47100 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.47241 * 64.99867 * 4 3 2 6 6 C 1.48069 * 111.00166 * 315.82884 * 5 4 3 7 7 C 1.53694 * 112.47324 * 192.19684 * 6 5 4 8 8 H 1.09007 * 108.94925 * 79.22748 * 7 6 5 9 9 C 1.52993 * 108.95578 * 197.96482 * 7 6 5 10 10 C 1.50801 * 112.10025 * 318.55602 * 7 6 5 11 11 N 1.47915 * 108.49739 * 92.54917 * 10 7 6 12 12 C 1.40013 * 114.06558 * 280.07181 * 11 10 7 13 13 C 1.44576 * 110.99855 * 188.14310 * 5 4 3 14 14 H 1.08998 * 109.57274 * 100.54118 * 13 5 4 15 15 C 1.50700 * 109.57511 * 340.15481 * 13 5 4 16 16 H 1.08003 * 119.99683 * 355.15581 * 15 13 5 17 17 C 1.37874 * 120.00058 * 175.15218 * 15 13 5 18 18 N 1.31515 * 119.99989 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 119.99912 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47239 * 60.00383 * 19 17 15 21 21 H 1.48498 * 109.46889 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47268 * 299.99858 * 19 17 15 23 23 H 1.09004 * 109.47280 * 59.99353 * 1 2 3 24 24 H 1.08994 * 109.47788 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47123 * 300.00153 * 1 2 3 26 26 H 1.08991 * 109.47395 * 59.99754 * 3 2 1 27 27 H 1.09007 * 109.47179 * 300.00290 * 3 2 1 28 28 H 1.08999 * 109.46838 * 304.99627 * 4 3 2 29 29 H 1.09005 * 109.46839 * 184.99997 * 4 3 2 30 30 H 1.08997 * 108.88277 * 312.97551 * 6 5 4 31 31 H 1.09000 * 108.87956 * 71.42849 * 6 5 4 32 32 H 1.09003 * 109.47408 * 60.00306 * 9 7 6 33 33 H 1.09007 * 109.47209 * 180.02562 * 9 7 6 34 34 H 1.08999 * 109.47544 * 299.99990 * 9 7 6 35 35 H 1.08999 * 109.63362 * 332.84617 * 10 7 6 36 36 H 1.08997 * 109.62957 * 212.24736 * 10 7 6 37 37 H 1.00902 * 110.99658 * 153.78646 * 11 10 7 38 38 H 1.08992 * 108.96229 * 182.47903 * 12 11 10 39 39 H 1.08998 * 108.95873 * 301.14440 * 12 11 10 40 40 H 0.96993 * 120.00201 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9769 0.5626 -1.2561 6 6 3.1245 -0.5978 -1.6019 7 6 3.7234 -1.4508 -2.7314 8 1 4.5016 -2.0915 -2.3166 9 6 2.6222 -2.3296 -3.3278 10 6 4.3191 -0.6035 -3.8275 11 7 5.7553 -0.4021 -3.5369 12 6 6.0114 0.5930 -2.5859 13 6 5.3897 0.2585 -1.2149 14 1 5.5291 -0.8008 -0.9995 15 6 6.0533 1.0859 -0.1443 16 1 5.4841 1.8295 0.3938 17 6 7.3868 0.8936 0.1482 18 7 8.0799 -0.0116 -0.5074 19 14 8.2091 1.9186 1.4758 20 1 7.5213 1.6931 2.7724 21 1 9.6349 1.5216 1.5956 22 1 8.1249 3.3564 1.1142 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.6887 1.8463 0.8899 27 1 1.6886 1.8464 -0.8900 28 1 3.8514 0.5681 0.8410 29 1 3.9786 2.1764 0.0889 30 1 3.0013 -1.2212 -0.7163 31 1 2.1454 -0.2353 -1.9148 32 1 1.8282 -1.6975 -3.7256 33 1 3.0382 -2.9390 -4.1302 34 1 2.2156 -2.9789 -2.5525 35 1 3.8133 0.3615 -3.8603 36 1 4.2069 -1.1118 -4.7851 37 1 6.2757 -0.2344 -4.3850 38 1 7.0896 0.7019 -2.4687 39 1 5.5984 1.5371 -2.9412 40 1 9.0182 -0.1467 -0.3019 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220566655.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:13 Heat of formation + Delta-G solvation = -21.711351 kcal Electronic energy + Delta-G solvation = -19296.513382 eV Core-core repulsion = 16533.039170 eV Total energy + Delta-G solvation = -2763.474211 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.83199 -37.27486 -34.60078 -33.58893 -32.00988 -29.34200 -27.30861 -26.30280 -25.42229 -24.07677 -23.30195 -20.97552 -19.67983 -18.43417 -16.46653 -16.24092 -15.82684 -15.27323 -14.71720 -14.41042 -14.18243 -14.12769 -13.53954 -13.08158 -12.69240 -12.35750 -12.06403 -11.94009 -11.78497 -11.52650 -11.14671 -10.97528 -10.95636 -10.65395 -10.49563 -10.17701 -9.94247 -9.90868 -9.78320 -9.49120 -9.03038 -8.71637 -8.45680 -7.19056 -6.85009 -5.97394 -4.04524 3.32132 3.37322 3.38930 4.17656 4.42911 5.02837 5.19809 5.37170 5.40272 5.46093 5.54309 5.70451 5.71974 5.78361 5.79237 5.90585 6.00007 6.19967 6.23395 6.37347 6.44404 6.49828 6.64569 6.72695 6.85632 6.91184 6.98488 7.06380 7.16624 7.42237 7.51356 7.80363 7.95378 8.10780 8.32697 8.47927 8.62336 8.88146 9.08151 9.62137 11.08605 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.020343 B = 0.009603 C = 0.007002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.037076 B = 2915.109222 C = 3997.698654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.380 6.380 3 C 0.053 3.947 4 C 0.080 3.920 5 N -0.553 5.553 6 C 0.084 3.916 7 C -0.097 4.097 8 H 0.076 0.924 9 C -0.137 4.137 10 C 0.080 3.920 11 N -0.695 5.695 12 C 0.091 3.909 13 C 0.228 3.772 14 H 0.020 0.980 15 C -0.534 4.534 16 H 0.070 0.930 17 C 0.065 3.935 18 N -0.878 5.878 19 Si 0.889 3.111 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 H 0.035 0.965 24 H 0.078 0.922 25 H 0.033 0.967 26 H 0.042 0.958 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.091 0.909 30 H 0.032 0.968 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.035 0.965 36 H 0.050 0.950 37 H 0.323 0.677 38 H 0.087 0.913 39 H -0.010 1.010 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.356 -0.040 -2.935 11.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.299 6.299 3 C -0.023 4.023 4 C -0.048 4.048 5 N -0.279 5.279 6 C -0.043 4.043 7 C -0.116 4.116 8 H 0.094 0.906 9 C -0.195 4.195 10 C -0.049 4.049 11 N -0.325 5.325 12 C -0.040 4.040 13 C 0.120 3.880 14 H 0.038 0.962 15 C -0.573 4.573 16 H 0.087 0.913 17 C -0.138 4.138 18 N -0.515 5.515 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.054 0.946 24 H 0.097 0.903 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.109 0.891 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.141 0.859 38 H 0.105 0.895 39 H 0.008 0.992 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.096 -0.429 -2.824 11.458 hybrid contribution 0.282 0.981 0.856 1.332 sum -10.815 0.552 -1.969 11.006 Atomic orbital electron populations 1.22653 0.83017 1.01960 0.99265 1.88210 1.18166 1.28439 1.95056 1.22897 0.96005 0.84266 0.99176 1.22107 0.88868 1.01021 0.92815 1.61037 1.05944 1.29174 1.31734 1.22400 0.95169 0.91005 0.95735 1.21090 0.97215 0.97197 0.96139 0.90587 1.21796 0.98503 0.99139 1.00088 1.21567 0.89194 0.98195 0.95961 1.57765 1.07860 1.53099 1.13777 1.20945 1.01904 0.88910 0.92219 1.18962 0.80972 0.96123 0.91919 0.96237 1.21591 0.95472 1.21076 1.19119 0.91254 1.24999 0.97474 0.95188 0.96186 1.69990 1.08560 1.32513 1.40464 0.86704 0.78486 0.80675 0.82399 1.20345 1.21320 1.20296 0.94606 0.90331 0.94847 0.93957 0.93306 0.93858 0.89135 0.95001 0.92216 0.93404 0.93193 0.93247 0.94633 0.93117 0.85919 0.89499 0.99190 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.38 -6.29 6.63 -35.23 -0.23 -6.53 16 3 C 0.05 0.88 5.65 37.16 0.21 1.09 16 4 C 0.08 1.63 4.38 -3.82 -0.02 1.61 16 5 N -0.55 -12.27 4.10 -227.63 -0.93 -13.20 16 6 C 0.08 1.68 3.26 -2.82 -0.01 1.67 16 7 C -0.10 -1.83 2.25 -91.37 -0.21 -2.03 16 8 H 0.08 1.66 7.23 -51.92 -0.38 1.29 16 9 C -0.14 -2.03 8.85 37.15 0.33 -1.70 16 10 C 0.08 1.49 5.73 -4.37 -0.03 1.47 16 11 N -0.69 -14.81 6.21 -118.32 -0.73 -15.54 16 12 C 0.09 2.23 5.37 -6.75 -0.04 2.20 16 13 C 0.23 5.83 1.85 -69.48 -0.13 5.70 16 14 H 0.02 0.58 6.93 -51.93 -0.36 0.22 16 15 C -0.53 -14.43 7.44 -34.44 -0.26 -14.69 16 16 H 0.07 1.81 4.92 -52.48 -0.26 1.55 16 17 C 0.06 1.78 5.18 -17.82 -0.09 1.69 16 18 N -0.88 -25.18 11.83 55.43 0.66 -24.53 16 19 Si 0.89 21.11 29.54 -169.99 -5.02 16.08 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.78 8.14 -51.92 -0.42 0.35 16 28 H 0.04 0.98 7.61 -51.93 -0.40 0.58 16 29 H 0.09 1.88 6.35 -51.93 -0.33 1.55 16 30 H 0.03 0.69 6.90 -51.93 -0.36 0.33 16 31 H 0.06 1.12 6.26 -51.93 -0.32 0.80 16 32 H 0.05 0.65 8.11 -51.93 -0.42 0.23 16 33 H 0.05 0.68 8.02 -51.92 -0.42 0.26 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.04 0.70 7.57 -51.93 -0.39 0.31 16 36 H 0.05 0.82 7.66 -51.93 -0.40 0.42 16 37 H 0.32 6.13 8.85 -39.29 -0.35 5.78 16 38 H 0.09 2.37 6.32 -51.93 -0.33 2.04 16 39 H -0.01 -0.25 8.07 -51.93 -0.42 -0.67 16 40 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 298.57 15.07 4.50 4.50 Total: -1.00 -29.06 298.57 -7.68 -36.74 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -6.80 Total: 4.03 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 0.88 Total: -1.55 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: -1.01 Total: -53.27 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.23 Total: -6.53 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.06 -7.68 -36.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220566655.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.029 kcal (2) G-P(sol) polarization free energy of solvation -29.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds