Wall clock time and date at job start Mon Mar 30 2020 04:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42894 * 114.00162 * 2 1 4 4 C 1.53005 * 109.47294 * 180.02562 * 3 2 1 5 5 N 1.46899 * 109.47128 * 66.94026 * 4 3 2 6 6 C 1.44180 * 110.99972 * 300.67038 * 5 4 3 7 7 C 1.54323 * 112.60620 * 217.52629 * 6 5 4 8 8 C 1.54319 * 111.72271 * 318.91944 * 7 6 5 9 9 H 1.08998 * 108.85271 * 79.62633 * 8 7 6 10 10 C 1.53002 * 108.84885 * 198.11371 * 8 7 6 11 11 N 1.44251 * 112.54372 * 318.91453 * 8 7 6 12 12 C 1.48084 * 109.87563 * 94.44817 * 11 8 7 13 13 H 1.08999 * 108.95042 * 40.18810 * 12 11 8 14 14 C 1.50699 * 108.94559 * 158.90478 * 12 11 8 15 15 H 1.08002 * 120.00111 * 121.27301 * 14 12 11 16 16 C 1.37877 * 120.00205 * 301.27383 * 14 12 11 17 17 N 1.31518 * 119.99893 * 0.02562 * 16 14 12 18 18 Si 1.86794 * 120.00216 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47214 * 180.02562 * 18 16 14 20 20 H 1.48507 * 109.47140 * 299.99986 * 18 16 14 21 21 H 1.48502 * 109.47451 * 60.00169 * 18 16 14 22 22 C 1.46090 * 112.07935 * 279.54426 * 12 11 8 23 23 H 1.09001 * 109.46928 * 300.00064 * 1 2 3 24 24 H 1.08996 * 109.47467 * 59.99592 * 1 2 3 25 25 H 1.09004 * 109.47446 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47105 * 60.00221 * 3 2 1 27 27 H 1.08993 * 109.47502 * 300.00220 * 3 2 1 28 28 H 1.08997 * 109.46765 * 306.94325 * 4 3 2 29 29 H 1.09003 * 109.46937 * 186.94476 * 4 3 2 30 30 H 1.09000 * 108.85523 * 338.33199 * 6 5 4 31 31 H 1.08996 * 108.85978 * 96.71929 * 6 5 4 32 32 H 1.08997 * 109.03402 * 79.50424 * 7 6 5 33 33 H 1.09007 * 109.02243 * 198.34422 * 7 6 5 34 34 H 1.09000 * 109.47610 * 60.00006 * 10 8 7 35 35 H 1.09007 * 109.46618 * 180.02562 * 10 8 7 36 36 H 1.09006 * 109.47177 * 299.99510 * 10 8 7 37 37 H 1.00904 * 111.08153 * 331.23425 * 11 8 7 38 38 H 0.96999 * 119.99872 * 359.97438 * 17 16 14 39 39 H 1.08996 * 108.94736 * 181.42217 * 22 12 11 40 40 H 1.08999 * 108.94576 * 300.04564 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9803 0.6054 -1.2752 6 6 3.4003 -0.6986 -1.4806 7 6 4.3798 -1.6845 -2.1514 8 6 5.1904 -1.0076 -3.2766 9 1 6.0045 -0.4369 -2.8298 10 6 5.7842 -2.0914 -4.1788 11 7 4.3863 -0.1199 -4.0804 12 6 4.4991 1.2647 -3.5676 13 1 5.5340 1.4531 -3.2817 14 6 4.1119 2.2251 -4.6625 15 1 3.2944 2.9146 -4.5119 16 6 4.8013 2.2235 -5.8566 17 7 5.7965 1.3835 -6.0402 18 14 4.3209 3.4134 -7.2140 19 1 5.2094 3.2114 -8.3866 20 1 2.9118 3.1665 -7.6129 21 1 4.4590 4.8077 -6.7220 22 6 3.6381 1.4934 -2.4098 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8463 -0.8899 28 1 3.8492 0.5400 0.8204 29 1 3.9782 2.1728 0.1236 30 1 3.0969 -1.1051 -0.5158 31 1 2.5169 -0.5960 -2.1108 32 1 5.0684 -2.0688 -1.3989 33 1 3.8144 -2.5164 -2.5717 34 1 4.9792 -2.6860 -4.6106 35 1 6.3599 -1.6238 -4.9777 36 1 6.4371 -2.7363 -3.5905 37 1 3.4233 -0.4207 -4.1005 38 1 6.0457 0.7653 -5.3355 39 1 3.7417 2.5306 -2.0910 40 1 2.6022 1.3155 -2.6984 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220567626.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:09 Heat of formation + Delta-G solvation = -57.003606 kcal Electronic energy + Delta-G solvation = -19176.728599 eV Core-core repulsion = 16411.724000 eV Total energy + Delta-G solvation = -2765.004598 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.87131 -38.81582 -36.46594 -35.34578 -32.76896 -31.24771 -29.09985 -28.20177 -27.04534 -25.90602 -24.17193 -23.20476 -21.85743 -20.33020 -18.89345 -17.63801 -17.35727 -16.79427 -16.37711 -16.05986 -15.75610 -15.58382 -15.25117 -14.78379 -14.13451 -13.90251 -13.78051 -13.48547 -13.31684 -13.19640 -12.78546 -12.61485 -12.55796 -12.36616 -12.21182 -12.09498 -11.89441 -11.73692 -11.44714 -11.31568 -10.70535 -10.44603 -10.35297 -9.23340 -8.88802 -8.25997 -6.14789 1.57477 1.65725 1.84136 2.65801 2.75441 3.06654 3.34645 3.83180 3.94493 4.01011 4.07628 4.23477 4.27494 4.30695 4.38027 4.45697 4.48536 4.52820 4.57332 4.72669 4.77951 4.82723 4.94337 4.95090 4.98494 5.07715 5.16017 5.18124 5.31800 5.39549 5.50145 5.97029 6.09882 6.19083 6.30678 6.36855 6.78307 6.93678 7.03224 7.79136 9.07552 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022713 B = 0.008041 C = 0.006576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.460971 B = 3481.483776 C = 4256.844921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.402 6.402 3 C 0.028 3.972 4 C 0.058 3.942 5 N -0.543 5.543 6 C 0.076 3.924 7 C -0.130 4.130 8 C 0.090 3.910 9 H 0.037 0.963 10 C -0.127 4.127 11 N -0.664 5.664 12 C 0.210 3.790 13 H -0.008 1.008 14 C -0.626 4.626 15 H 0.037 0.963 16 C -0.008 4.008 17 N -0.918 5.918 18 Si 1.108 2.892 19 H -0.288 1.288 20 H -0.278 1.278 21 H -0.275 1.275 22 C 0.068 3.932 23 H 0.055 0.945 24 H 0.033 0.967 25 H 0.096 0.904 26 H 0.073 0.927 27 H 0.034 0.966 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.018 0.982 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.030 0.970 36 H 0.066 0.934 37 H 0.316 0.684 38 H 0.279 0.721 39 H 0.055 0.945 40 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.166 -3.652 12.678 15.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.322 6.322 3 C -0.050 4.050 4 C -0.070 4.070 5 N -0.265 5.265 6 C -0.053 4.053 7 C -0.170 4.170 8 C -0.022 4.022 9 H 0.055 0.945 10 C -0.185 4.185 11 N -0.293 5.293 12 C 0.103 3.897 13 H 0.010 0.990 14 C -0.665 4.665 15 H 0.055 0.945 16 C -0.212 4.212 17 N -0.554 5.554 18 Si 0.932 3.068 19 H -0.214 1.214 20 H -0.204 1.204 21 H -0.201 1.201 22 C -0.060 4.060 23 H 0.074 0.926 24 H 0.052 0.948 25 H 0.115 0.885 26 H 0.091 0.909 27 H 0.053 0.947 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.036 0.964 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.133 0.867 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -6.647 -3.326 10.692 13.022 hybrid contribution -1.896 -0.097 2.116 2.843 sum -8.543 -3.423 12.809 15.772 Atomic orbital electron populations 1.22874 0.80354 1.03597 1.00280 1.87950 1.20854 1.27897 1.95467 1.23287 0.95880 0.85156 1.00693 1.22505 0.91014 1.01613 0.91866 1.61705 1.59425 1.03208 1.02201 1.21786 0.93910 0.89205 1.00417 1.22707 0.98629 0.97794 0.97892 1.21205 0.95852 0.93535 0.91602 0.94469 1.21765 1.00075 0.97636 0.99052 1.61165 1.12704 1.02459 1.52935 1.18013 0.93684 0.87009 0.91025 0.99027 1.22142 1.20505 1.20881 1.03018 0.94491 1.26850 0.93550 0.99500 1.01338 1.70642 1.27020 1.20164 1.37542 0.83063 0.75842 0.74196 0.73672 1.21376 1.20365 1.20093 1.21493 0.96912 0.95853 0.91746 0.92648 0.94846 0.88507 0.90859 0.94735 0.88922 0.88785 0.89590 0.96405 0.91301 0.91324 0.93048 0.95055 0.91558 0.86736 0.90923 0.92676 0.96450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 11.01 113.37 1.25 1.74 16 2 O -0.40 -10.42 7.39 -148.98 -1.10 -11.52 16 3 C 0.03 0.70 5.82 71.98 0.42 1.12 16 4 C 0.06 1.59 5.68 86.31 0.49 2.08 16 5 N -0.54 -19.19 4.48 -910.30 -4.08 -23.27 16 6 C 0.08 2.51 3.58 87.26 0.31 2.82 16 7 C -0.13 -4.29 5.58 31.49 0.18 -4.12 16 8 C 0.09 3.67 2.64 45.86 0.12 3.79 16 9 H 0.04 1.71 7.16 -2.39 -0.02 1.69 16 10 C -0.13 -4.79 9.36 71.98 0.67 -4.11 16 11 N -0.66 -31.77 4.44 -484.96 -2.15 -33.93 16 12 C 0.21 10.76 1.65 41.82 0.07 10.83 16 13 H -0.01 -0.48 7.22 -2.39 -0.02 -0.49 16 14 C -0.63 -35.72 8.68 25.60 0.22 -35.50 16 15 H 0.04 2.08 7.72 -2.91 -0.02 2.06 16 16 C -0.01 -0.48 5.38 84.65 0.46 -0.03 16 17 N -0.92 -57.19 13.48 21.45 0.29 -56.90 16 18 Si 1.11 51.60 29.90 68.60 2.05 53.65 16 19 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 20 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 21 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 22 C 0.07 2.91 3.12 83.95 0.26 3.17 16 23 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.03 1.00 6.69 -2.39 -0.02 0.98 16 28 H 0.09 2.28 8.06 -2.39 -0.02 2.26 16 29 H 0.09 2.42 7.98 -2.39 -0.02 2.40 16 30 H 0.09 2.63 5.99 -2.39 -0.01 2.61 16 31 H 0.02 0.65 6.39 -2.39 -0.02 0.63 16 32 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.07 2.07 7.97 -2.38 -0.02 2.06 16 34 H 0.05 1.81 8.12 -2.39 -0.02 1.79 16 35 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 37 H 0.32 14.80 7.56 -89.69 -0.68 14.12 16 38 H 0.28 17.55 6.30 -92.71 -0.58 16.96 16 39 H 0.05 2.34 7.74 -2.39 -0.02 2.32 16 40 H 0.02 0.76 6.72 -2.39 -0.02 0.75 16 Total: -1.00 -65.53 302.11 -0.04 -65.57 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: 0.51 Total: 24.61 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: 4.45 Total: -18.21 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -5.94 Total: -114.10 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -1.10 Total: -11.52 kcal Atomic # 14 Polarization: 51.60 SS G_CDS: 2.05 Total: 53.65 kcal Total: -65.53 -0.04 -65.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220567626.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.567 kcal (2) G-P(sol) polarization free energy of solvation -65.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds