Wall clock time and date at job start Mon Mar 30 2020 04:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99687 * 2 1 4 4 C 1.52991 * 109.46920 * 180.02562 * 3 2 1 5 5 N 1.46892 * 109.47809 * 63.45844 * 4 3 2 6 6 C 1.40087 * 111.00300 * 67.60044 * 5 4 3 7 7 C 1.54647 * 111.43569 * 188.19443 * 6 5 4 8 8 C 1.50746 * 108.86972 * 283.85725 * 7 6 5 9 9 H 1.08998 * 108.78648 * 331.95204 * 8 7 6 10 10 C 1.53007 * 108.78711 * 213.62697 * 8 7 6 11 11 N 1.48068 * 112.84949 * 92.78892 * 8 7 6 12 12 C 1.47734 * 113.78844 * 318.22813 * 11 8 7 13 13 H 1.09003 * 108.99657 * 79.49914 * 12 11 8 14 14 C 1.50705 * 108.99321 * 198.33030 * 12 11 8 15 15 H 1.07998 * 120.00117 * 120.00040 * 14 12 11 16 16 C 1.37884 * 119.99653 * 300.00121 * 14 12 11 17 17 N 1.31519 * 120.00060 * 359.97438 * 16 14 12 18 18 Si 1.86794 * 119.99991 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47046 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47107 * 119.99960 * 18 16 14 21 21 H 1.48495 * 109.47328 * 240.00405 * 18 16 14 22 22 C 1.47690 * 111.00402 * 196.24651 * 5 4 3 23 23 H 1.09002 * 109.47020 * 299.99707 * 1 2 3 24 24 H 1.08993 * 109.47147 * 60.00075 * 1 2 3 25 25 H 1.09005 * 109.46734 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47131 * 59.99778 * 3 2 1 27 27 H 1.09003 * 109.47033 * 300.00048 * 3 2 1 28 28 H 1.09003 * 109.46902 * 303.45430 * 4 3 2 29 29 H 1.09008 * 109.47203 * 183.45895 * 4 3 2 30 30 H 1.09007 * 109.06532 * 308.67791 * 6 5 4 31 31 H 1.08995 * 109.06625 * 67.62868 * 6 5 4 32 32 H 1.08996 * 109.52939 * 164.07911 * 7 6 5 33 33 H 1.09003 * 109.66443 * 43.71448 * 7 6 5 34 34 H 1.08994 * 109.47256 * 298.34262 * 10 8 7 35 35 H 1.08998 * 109.47380 * 58.34753 * 10 8 7 36 36 H 1.09002 * 109.46621 * 178.35114 * 10 8 7 37 37 H 1.00897 * 110.99647 * 84.29498 * 11 8 7 38 38 H 0.96992 * 119.99669 * 179.97438 * 17 16 14 39 39 H 1.08996 * 109.74116 * 32.33438 * 22 5 4 40 40 H 1.09007 * 109.73558 * 271.63632 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 7 3.9743 0.5294 -1.2398 6 6 3.7352 1.3469 -2.3520 7 6 4.0021 0.5929 -3.6755 8 6 5.4911 0.4967 -3.8902 9 1 5.9715 1.3447 -3.4021 10 6 5.7780 0.5659 -5.3915 11 7 6.0701 -0.7548 -3.3510 12 6 5.5289 -1.1420 -2.0320 13 1 4.5582 -1.6175 -2.1725 14 6 6.4686 -2.1275 -1.3864 15 1 6.9277 -1.8937 -0.4372 16 6 6.7422 -3.3277 -2.0075 17 7 6.1826 -3.6127 -3.1631 18 14 7.9074 -4.5490 -1.2076 19 1 8.3993 -3.9941 0.0791 20 1 7.1903 -5.8244 -0.9542 21 1 9.0587 -4.7996 -2.1114 22 6 5.3651 0.0473 -1.1197 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 3.8531 0.5912 0.8566 29 1 3.9786 2.1787 0.0614 30 1 2.6968 1.6783 -2.3338 31 1 4.3870 2.2189 -2.2997 32 1 3.5485 1.1380 -4.5033 33 1 3.5761 -0.4089 -3.6193 34 1 5.3023 -0.2777 -5.8916 35 1 5.3817 1.4978 -5.7947 36 1 6.8546 0.5268 -5.5578 37 1 5.9805 -1.5098 -4.0144 38 1 6.3754 -4.4568 -3.6001 39 1 5.5645 -0.2486 -0.0898 40 1 6.0554 0.8369 -1.4168 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220567696.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:13 Heat of formation + Delta-G solvation = -30.994104 kcal Electronic energy + Delta-G solvation = -18844.974850 eV Core-core repulsion = 16081.098108 eV Total energy + Delta-G solvation = -2763.876742 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.06783 -37.40819 -34.94614 -33.26118 -30.82533 -30.02523 -27.64336 -26.48431 -25.79534 -24.47480 -22.83813 -21.08314 -19.98634 -18.60339 -16.59371 -16.25428 -15.84974 -15.32725 -14.67634 -14.47965 -14.39824 -14.11017 -13.96598 -13.05747 -12.70653 -12.33034 -12.23228 -11.86205 -11.71937 -11.58146 -11.40770 -11.18100 -10.94981 -10.81201 -10.50405 -10.33841 -10.16694 -10.09339 -9.84597 -9.48562 -9.40674 -9.00159 -8.37898 -7.46938 -6.59080 -5.93577 -3.93172 3.38103 3.45559 3.49487 4.01324 4.43455 4.60229 5.16743 5.25941 5.30925 5.38890 5.42473 5.49077 5.56540 5.61131 5.71126 5.76696 5.81451 5.89250 5.99157 6.11462 6.14407 6.31004 6.32205 6.45729 6.50171 6.66643 6.67174 6.81727 7.02184 7.10838 7.39771 7.58275 7.90781 8.01253 8.15021 8.42437 8.83043 9.20200 9.24322 9.72562 11.18427 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.019095 B = 0.008036 C = 0.006392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.976868 B = 3483.639495 C = 4379.392049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.366 6.366 3 C 0.065 3.935 4 C 0.061 3.939 5 N -0.547 5.547 6 C 0.082 3.918 7 C -0.143 4.143 8 C 0.078 3.922 9 H 0.052 0.948 10 C -0.145 4.145 11 N -0.682 5.682 12 C 0.221 3.779 13 H 0.017 0.983 14 C -0.498 4.498 15 H 0.056 0.944 16 C 0.070 3.930 17 N -0.896 5.896 18 Si 0.894 3.106 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.285 1.285 22 C 0.079 3.921 23 H 0.033 0.967 24 H 0.035 0.965 25 H 0.083 0.917 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.082 0.918 29 H 0.040 0.960 30 H 0.056 0.944 31 H 0.008 0.992 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.044 0.956 36 H 0.055 0.945 37 H 0.357 0.643 38 H 0.259 0.741 39 H 0.070 0.930 40 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.040 10.266 2.073 13.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.012 4.012 4 C -0.067 4.067 5 N -0.271 5.271 6 C -0.048 4.048 7 C -0.183 4.183 8 C -0.032 4.032 9 H 0.070 0.930 10 C -0.203 4.203 11 N -0.319 5.319 12 C 0.114 3.886 13 H 0.035 0.965 14 C -0.538 4.538 15 H 0.074 0.926 16 C -0.132 4.132 17 N -0.536 5.536 18 Si 0.722 3.278 19 H -0.199 1.199 20 H -0.213 1.213 21 H -0.212 1.212 22 C -0.047 4.047 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.102 0.898 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.100 0.900 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.025 0.975 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.179 0.821 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -7.675 9.890 2.143 12.700 hybrid contribution -0.052 -0.027 0.123 0.136 sum -7.726 9.863 2.265 12.732 Atomic orbital electron populations 1.22696 0.82348 1.02475 0.99059 1.88108 1.18259 1.26988 1.95068 1.22625 0.94368 0.85162 0.99025 1.22066 0.92829 0.97378 0.94386 1.58958 1.24979 1.41896 1.01282 1.20987 0.98976 0.93268 0.91570 1.22241 0.99269 1.01475 0.95325 1.21397 0.91358 0.96702 0.93774 0.92951 1.21952 1.01621 1.00214 0.96527 1.61045 1.59612 1.04722 1.06543 1.18758 0.94896 0.89931 0.85016 0.96541 1.21226 1.27336 1.00223 1.04984 0.92603 1.24927 0.95609 0.97805 0.94825 1.69735 1.43784 1.23932 1.16104 0.86523 0.80885 0.81021 0.79341 1.19945 1.21311 1.21169 1.22133 0.83883 0.97685 1.01022 0.94858 0.94635 0.89849 0.93793 0.93666 0.89988 0.94245 0.92550 0.97450 0.92637 0.90700 0.93179 0.93686 0.92562 0.82100 0.93077 0.91194 0.95194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.37 -6.04 10.63 -35.23 -0.37 -6.42 16 3 C 0.07 0.91 5.98 37.15 0.22 1.14 16 4 C 0.06 0.97 5.36 -3.83 -0.02 0.95 16 5 N -0.55 -10.53 3.90 -239.60 -0.94 -11.47 16 6 C 0.08 1.43 4.84 -6.48 -0.03 1.40 16 7 C -0.14 -2.66 5.19 -26.99 -0.14 -2.80 16 8 C 0.08 1.56 2.66 -68.20 -0.18 1.38 16 9 H 0.05 1.06 6.51 -51.93 -0.34 0.72 16 10 C -0.15 -2.51 8.95 37.16 0.33 -2.18 16 11 N -0.68 -16.65 6.17 -101.89 -0.63 -17.28 16 12 C 0.22 5.68 1.97 -69.52 -0.14 5.54 16 13 H 0.02 0.49 7.19 -51.93 -0.37 0.12 16 14 C -0.50 -13.99 8.60 -34.44 -0.30 -14.28 16 15 H 0.06 1.55 7.45 -52.49 -0.39 1.16 16 16 C 0.07 1.97 5.38 -17.82 -0.10 1.87 16 17 N -0.90 -25.76 11.65 55.43 0.65 -25.11 16 18 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 19 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 22 C 0.08 1.73 4.87 -4.50 -0.02 1.70 16 23 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.60 6.27 -51.93 -0.33 0.28 16 28 H 0.08 1.33 7.64 -51.93 -0.40 0.93 16 29 H 0.04 0.55 8.09 -51.92 -0.42 0.13 16 30 H 0.06 0.89 5.96 -51.93 -0.31 0.58 16 31 H 0.01 0.13 7.59 -51.93 -0.39 -0.26 16 32 H 0.05 0.89 7.66 -51.93 -0.40 0.49 16 33 H 0.07 1.62 7.18 -51.93 -0.37 1.25 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.04 0.65 8.04 -51.93 -0.42 0.24 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.36 9.39 6.77 -39.29 -0.27 9.13 16 38 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.07 1.54 6.89 -51.93 -0.36 1.18 16 40 H 0.03 0.66 6.77 -51.93 -0.35 0.31 16 LS Contribution 305.19 15.07 4.60 4.60 Total: -1.00 -29.75 305.19 -7.75 -37.50 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.78 Total: 5.20 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 0.74 Total: -3.80 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -0.92 Total: -53.86 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.37 Total: -6.42 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.75 -7.75 -37.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220567696.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.506 kcal (2) G-P(sol) polarization free energy of solvation -29.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds