Wall clock time and date at job start Mon Mar 30 2020 04:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42905 * 113.99687 * 2 1 4 4 C 1.52991 * 109.46920 * 180.02562 * 3 2 1 5 5 N 1.46892 * 109.47809 * 63.45844 * 4 3 2 6 6 C 1.40087 * 111.00300 * 67.60044 * 5 4 3 7 7 C 1.54647 * 111.43569 * 188.19443 * 6 5 4 8 8 C 1.50746 * 108.86972 * 283.85725 * 7 6 5 9 9 H 1.08998 * 108.78648 * 331.95204 * 8 7 6 10 10 C 1.53007 * 108.78711 * 213.62697 * 8 7 6 11 11 N 1.48068 * 112.84949 * 92.78892 * 8 7 6 12 12 C 1.47734 * 113.78844 * 318.22813 * 11 8 7 13 13 H 1.09003 * 108.99657 * 79.49914 * 12 11 8 14 14 C 1.50705 * 108.99321 * 198.33030 * 12 11 8 15 15 H 1.07998 * 120.00117 * 120.00040 * 14 12 11 16 16 C 1.37884 * 119.99653 * 300.00121 * 14 12 11 17 17 N 1.31519 * 120.00060 * 359.97438 * 16 14 12 18 18 Si 1.86794 * 119.99991 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47046 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47107 * 119.99960 * 18 16 14 21 21 H 1.48495 * 109.47328 * 240.00405 * 18 16 14 22 22 C 1.47690 * 111.00402 * 196.24651 * 5 4 3 23 23 H 1.09002 * 109.47020 * 299.99707 * 1 2 3 24 24 H 1.08993 * 109.47147 * 60.00075 * 1 2 3 25 25 H 1.09005 * 109.46734 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47131 * 59.99778 * 3 2 1 27 27 H 1.09003 * 109.47033 * 300.00048 * 3 2 1 28 28 H 1.09003 * 109.46902 * 303.45430 * 4 3 2 29 29 H 1.09008 * 109.47203 * 183.45895 * 4 3 2 30 30 H 1.09007 * 109.06532 * 308.67791 * 6 5 4 31 31 H 1.08995 * 109.06625 * 67.62868 * 6 5 4 32 32 H 1.08996 * 109.52939 * 164.07911 * 7 6 5 33 33 H 1.09003 * 109.66443 * 43.71448 * 7 6 5 34 34 H 1.08994 * 109.47256 * 298.34262 * 10 8 7 35 35 H 1.08998 * 109.47380 * 58.34753 * 10 8 7 36 36 H 1.09002 * 109.46621 * 178.35114 * 10 8 7 37 37 H 1.00897 * 110.99647 * 84.29498 * 11 8 7 38 38 H 0.96992 * 119.99669 * 179.97438 * 17 16 14 39 39 H 1.08996 * 109.74116 * 32.33438 * 22 5 4 40 40 H 1.09007 * 109.73558 * 271.63632 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 7 3.9743 0.5294 -1.2398 6 6 3.7352 1.3469 -2.3520 7 6 4.0021 0.5929 -3.6755 8 6 5.4911 0.4967 -3.8902 9 1 5.9715 1.3447 -3.4021 10 6 5.7780 0.5659 -5.3915 11 7 6.0701 -0.7548 -3.3510 12 6 5.5289 -1.1420 -2.0320 13 1 4.5582 -1.6175 -2.1725 14 6 6.4686 -2.1275 -1.3864 15 1 6.9277 -1.8937 -0.4372 16 6 6.7422 -3.3277 -2.0075 17 7 6.1826 -3.6127 -3.1631 18 14 7.9074 -4.5490 -1.2076 19 1 8.3993 -3.9941 0.0791 20 1 7.1903 -5.8244 -0.9542 21 1 9.0587 -4.7996 -2.1114 22 6 5.3651 0.0473 -1.1197 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6885 1.8464 -0.8900 28 1 3.8531 0.5912 0.8566 29 1 3.9786 2.1787 0.0614 30 1 2.6968 1.6783 -2.3338 31 1 4.3870 2.2189 -2.2997 32 1 3.5485 1.1380 -4.5033 33 1 3.5761 -0.4089 -3.6193 34 1 5.3023 -0.2777 -5.8916 35 1 5.3817 1.4978 -5.7947 36 1 6.8546 0.5268 -5.5578 37 1 5.9805 -1.5098 -4.0144 38 1 6.3754 -4.4568 -3.6001 39 1 5.5645 -0.2486 -0.0898 40 1 6.0554 0.8369 -1.4168 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220567696.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:12 Heat of formation + Delta-G solvation = -53.212481 kcal Electronic energy + Delta-G solvation = -18845.938311 eV Core-core repulsion = 16081.098108 eV Total energy + Delta-G solvation = -2764.840203 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.57765 -38.62817 -36.49001 -35.18639 -32.75952 -31.31201 -29.09670 -28.17342 -27.09417 -26.17038 -24.26509 -22.68064 -21.46623 -20.37775 -18.48520 -17.40205 -17.19920 -16.93252 -16.36328 -16.18213 -15.73286 -15.55379 -15.47700 -14.70542 -14.08634 -14.01215 -13.63878 -13.35352 -13.21422 -13.10979 -12.90364 -12.70297 -12.51718 -12.33126 -12.22745 -11.95111 -11.84841 -11.70080 -11.46165 -11.32955 -10.88491 -10.51537 -10.47073 -8.93456 -8.52784 -8.07357 -6.15208 1.43417 1.44742 1.56129 2.47560 2.97335 3.10636 3.19707 3.88520 3.97070 4.07558 4.15205 4.27675 4.37619 4.45061 4.50371 4.56485 4.57109 4.61153 4.65733 4.74101 4.78336 4.88433 4.89044 4.96081 4.98819 4.99649 5.15087 5.24966 5.35144 5.51169 5.61490 5.86245 6.27595 6.35930 6.43119 6.64061 6.78704 7.16270 7.25826 7.54942 9.03161 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.019095 B = 0.008036 C = 0.006392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.976868 B = 3483.639495 C = 4379.392049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.409 6.409 3 C 0.068 3.932 4 C 0.058 3.942 5 N -0.565 5.565 6 C 0.082 3.918 7 C -0.137 4.137 8 C 0.075 3.925 9 H 0.054 0.946 10 C -0.138 4.138 11 N -0.695 5.695 12 C 0.230 3.770 13 H -0.030 1.030 14 C -0.525 4.525 15 H 0.051 0.949 16 C 0.022 3.978 17 N -0.919 5.919 18 Si 0.958 3.042 19 H -0.269 1.269 20 H -0.283 1.283 21 H -0.281 1.281 22 C 0.093 3.907 23 H 0.056 0.944 24 H 0.045 0.955 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.021 0.979 32 H 0.087 0.913 33 H 0.036 0.964 34 H 0.041 0.959 35 H 0.080 0.920 36 H 0.050 0.950 37 H 0.341 0.659 38 H 0.260 0.740 39 H 0.061 0.939 40 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.561 11.995 2.323 14.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.329 6.329 3 C -0.009 4.009 4 C -0.069 4.069 5 N -0.289 5.289 6 C -0.047 4.047 7 C -0.176 4.176 8 C -0.035 4.035 9 H 0.072 0.928 10 C -0.195 4.195 11 N -0.330 5.330 12 C 0.123 3.877 13 H -0.013 1.013 14 C -0.564 4.564 15 H 0.070 0.930 16 C -0.177 4.177 17 N -0.560 5.560 18 Si 0.784 3.216 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.207 1.207 22 C -0.034 4.034 23 H 0.074 0.926 24 H 0.064 0.936 25 H 0.101 0.899 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.039 0.961 32 H 0.106 0.894 33 H 0.055 0.945 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.070 0.930 37 H 0.161 0.839 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -8.211 11.650 2.403 14.454 hybrid contribution 0.055 -0.536 0.036 0.540 sum -8.157 11.113 2.439 14.000 Atomic orbital electron populations 1.22853 0.80341 1.03097 1.00626 1.88049 1.20671 1.28708 1.95425 1.22687 0.92653 0.84630 1.00923 1.22190 0.94581 0.97961 0.92173 1.58837 1.22919 1.43732 1.03452 1.21040 1.00564 0.92967 0.90156 1.22159 0.97953 1.00005 0.97532 1.21499 0.92285 0.94310 0.95448 0.92763 1.21892 1.01477 1.01729 0.94439 1.60926 1.60541 1.05617 1.05884 1.18548 0.91897 0.90955 0.86334 1.01281 1.21608 1.27933 1.01596 1.05240 0.93039 1.25688 0.97091 0.99531 0.95394 1.69861 1.44700 1.24300 1.17095 0.85525 0.78838 0.78651 0.78591 1.19350 1.20944 1.20696 1.21784 0.85962 0.96277 0.99386 0.92581 0.93636 0.89881 0.90731 0.92678 0.91198 0.91800 0.90265 0.96149 0.89440 0.94548 0.93944 0.90140 0.93047 0.83857 0.93040 0.92022 0.95251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.85 16 2 O -0.41 -13.06 10.63 -148.98 -1.58 -14.64 16 3 C 0.07 1.72 5.98 71.98 0.43 2.15 16 4 C 0.06 1.74 5.36 86.30 0.46 2.20 16 5 N -0.56 -21.47 3.90 -911.97 -3.56 -25.03 16 6 C 0.08 2.70 4.84 88.09 0.43 3.13 16 7 C -0.14 -4.95 5.19 30.42 0.16 -4.79 16 8 C 0.07 2.93 2.66 43.96 0.12 3.04 16 9 H 0.05 2.12 6.51 -2.39 -0.02 2.10 16 10 C -0.14 -4.55 8.95 71.98 0.64 -3.91 16 11 N -0.69 -34.76 6.17 -476.28 -2.94 -37.71 16 12 C 0.23 12.26 1.97 43.29 0.09 12.35 16 13 H -0.03 -1.87 7.19 -2.39 -0.02 -1.89 16 14 C -0.52 -30.35 8.60 25.60 0.22 -30.13 16 15 H 0.05 2.93 7.45 -2.91 -0.02 2.91 16 16 C 0.02 1.27 5.38 84.66 0.46 1.72 16 17 N -0.92 -54.40 11.65 21.45 0.25 -54.15 16 18 Si 0.96 45.45 29.54 68.60 2.03 47.48 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 21 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 22 C 0.09 4.13 4.87 85.43 0.42 4.55 16 23 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 1.28 6.27 -2.39 -0.01 1.27 16 28 H 0.07 2.24 7.64 -2.39 -0.02 2.22 16 29 H 0.06 1.60 8.09 -2.38 -0.02 1.59 16 30 H 0.08 2.27 5.96 -2.38 -0.01 2.26 16 31 H 0.02 0.64 7.59 -2.39 -0.02 0.62 16 32 H 0.09 2.57 7.66 -2.39 -0.02 2.55 16 33 H 0.04 1.60 7.18 -2.39 -0.02 1.58 16 34 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.08 2.09 8.04 -2.39 -0.02 2.07 16 36 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.34 18.66 6.77 -89.70 -0.61 18.05 16 38 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 39 H 0.06 2.78 6.89 -2.39 -0.02 2.77 16 40 H 0.03 1.29 6.77 -2.38 -0.02 1.27 16 Total: -1.00 -66.25 305.19 -0.74 -67.00 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.40 Total: 24.86 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: 4.66 Total: -7.82 kcal Atomic # 7 Polarization: -110.63 SS G_CDS: -6.25 Total: -116.88 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -1.58 Total: -14.64 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -66.25 -0.74 -67.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220567696.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.783 kcal (2) G-P(sol) polarization free energy of solvation -66.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds