Wall clock time and date at job start Mon Mar 30 2020 04:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99802 * 2 1 4 4 C 1.53007 * 109.46962 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.46820 * 67.43438 * 4 3 2 6 6 C 1.47961 * 111.03871 * 55.91049 * 5 4 3 7 7 C 1.46136 * 112.27559 * 156.43493 * 6 5 4 8 8 C 1.54246 * 111.83954 * 60.90950 * 7 6 5 9 9 H 1.09000 * 109.61117 * 41.16718 * 8 7 6 10 10 C 1.52996 * 109.60876 * 161.67097 * 8 7 6 11 11 N 1.44253 * 108.64597 * 281.42093 * 8 7 6 12 12 C 1.48208 * 114.27292 * 93.39271 * 11 8 7 13 13 C 1.44255 * 111.00152 * 293.29344 * 5 4 3 14 14 H 1.08997 * 108.86964 * 96.34692 * 13 5 4 15 15 C 1.50706 * 108.78617 * 337.87179 * 13 5 4 16 16 H 1.07998 * 119.99275 * 350.33882 * 15 13 5 17 17 C 1.37872 * 120.00131 * 170.33509 * 15 13 5 18 18 N 1.31515 * 120.00220 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 119.99965 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47117 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.47173 * 120.00488 * 19 17 15 22 22 H 1.48501 * 109.47146 * 240.00341 * 19 17 15 23 23 H 1.08997 * 109.47121 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47182 * 300.00263 * 1 2 3 25 25 H 1.09006 * 109.47014 * 60.00396 * 1 2 3 26 26 H 1.08999 * 109.47750 * 59.99937 * 3 2 1 27 27 H 1.08999 * 109.47043 * 299.99406 * 3 2 1 28 28 H 1.08997 * 109.46954 * 307.43672 * 4 3 2 29 29 H 1.08996 * 109.47077 * 187.43284 * 4 3 2 30 30 H 1.08998 * 108.82484 * 35.75881 * 6 5 4 31 31 H 1.08996 * 108.95937 * 277.20287 * 6 5 4 32 32 H 1.09000 * 108.99489 * 300.32408 * 7 6 5 33 33 H 1.09000 * 108.99056 * 181.49544 * 7 6 5 34 34 H 1.09006 * 109.46924 * 60.00450 * 10 8 7 35 35 H 1.09005 * 109.46824 * 179.97438 * 10 8 7 36 36 H 1.08989 * 109.47685 * 299.99931 * 10 8 7 37 37 H 1.00898 * 111.00050 * 326.93815 * 11 8 7 38 38 H 1.09002 * 108.81540 * 78.98755 * 12 11 8 39 39 H 1.08996 * 108.82253 * 197.39872 * 12 11 8 40 40 H 0.96996 * 120.00397 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9821 0.6159 -1.2781 6 6 3.4919 1.4219 -2.4180 7 6 4.3176 1.2525 -3.6118 8 6 4.3297 -0.2112 -4.0981 9 1 3.3266 -0.6308 -4.0206 10 6 4.8014 -0.2651 -5.5525 11 7 5.2355 -0.9659 -3.2670 12 6 4.5888 -1.6389 -2.1158 13 6 3.5431 -0.7511 -1.4173 14 1 2.6215 -0.7679 -1.9992 15 6 3.2638 -1.3132 -0.0472 16 1 3.5510 -0.7574 0.8331 17 6 2.6419 -2.5368 0.0824 18 7 2.2926 -3.2138 -0.9897 19 14 2.2964 -3.2338 1.7807 20 1 2.7842 -2.2850 2.8137 21 1 0.8345 -3.4352 1.9451 22 1 2.9957 -4.5349 1.9334 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8463 -0.8900 28 1 3.8480 0.5334 0.8169 29 1 3.9780 2.1718 0.1336 30 1 3.4950 2.4737 -2.1321 31 1 2.4697 1.1229 -2.6495 32 1 5.3384 1.5590 -3.3836 33 1 3.9262 1.8873 -4.4067 34 1 5.8075 0.1483 -5.6237 35 1 4.8095 -1.3004 -5.8937 36 1 4.1240 0.3179 -6.1762 37 1 6.0094 -0.3940 -2.9635 38 1 4.1000 -2.5470 -2.4686 39 1 5.3563 -1.9118 -1.3915 40 1 1.8554 -4.0748 -0.8986 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220568955.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:50 Heat of formation + Delta-G solvation = -7.335616 kcal Electronic energy + Delta-G solvation = -19827.167821 eV Core-core repulsion = 17064.316989 eV Total energy + Delta-G solvation = -2762.850833 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.08593 -36.73507 -34.64514 -33.08279 -31.14516 -29.61422 -27.81440 -26.31479 -25.02109 -23.99593 -22.39732 -21.75566 -19.76098 -18.63987 -16.33941 -15.74815 -15.43243 -14.99859 -14.51411 -14.32315 -14.23032 -13.87447 -13.23497 -13.07034 -12.38797 -12.32316 -12.07094 -11.84328 -11.36012 -11.22467 -11.14832 -11.00898 -10.85144 -10.70232 -10.54374 -10.31516 -10.04024 -9.82189 -9.66840 -9.45747 -8.74495 -8.43621 -8.27131 -7.37761 -6.97470 -5.91107 -3.79317 3.34910 3.43350 3.46522 4.52225 4.73277 4.94326 5.26394 5.33861 5.58754 5.73571 5.82422 5.86492 5.91802 5.98671 6.07216 6.12640 6.13531 6.24315 6.28493 6.32745 6.41518 6.46429 6.51775 6.54680 6.71604 6.78197 6.82693 6.93623 7.25608 7.44607 7.82446 7.91905 8.04386 8.22308 8.26916 8.41578 8.51011 8.73719 9.14339 9.73536 11.18878 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.023958 B = 0.010656 C = 0.008641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.439099 B = 2626.894114 C = 3239.504603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.292 6.292 3 C 0.020 3.980 4 C 0.060 3.940 5 N -0.527 5.527 6 C 0.054 3.946 7 C -0.137 4.137 8 C 0.098 3.902 9 H 0.070 0.930 10 C -0.135 4.135 11 N -0.700 5.700 12 C 0.084 3.916 13 C 0.189 3.811 14 H 0.018 0.982 15 C -0.465 4.465 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.889 5.889 19 Si 0.885 3.115 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.290 1.290 23 H 0.073 0.927 24 H 0.017 0.983 25 H 0.018 0.982 26 H 0.025 0.975 27 H 0.027 0.973 28 H 0.107 0.893 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.028 0.972 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.044 0.956 37 H 0.329 0.671 38 H 0.079 0.921 39 H 0.049 0.951 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.797 8.060 -2.446 8.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.209 6.209 3 C -0.059 4.059 4 C -0.068 4.068 5 N -0.251 5.251 6 C -0.074 4.074 7 C -0.177 4.177 8 C -0.013 4.013 9 H 0.088 0.912 10 C -0.193 4.193 11 N -0.329 5.329 12 C -0.044 4.044 13 C 0.080 3.920 14 H 0.036 0.964 15 C -0.503 4.503 16 H 0.090 0.910 17 C -0.129 4.129 18 N -0.529 5.529 19 Si 0.715 3.285 20 H -0.200 1.200 21 H -0.216 1.216 22 H -0.216 1.216 23 H 0.092 0.908 24 H 0.035 0.965 25 H 0.036 0.964 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.125 0.875 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.147 0.853 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 1.281 7.164 -2.890 7.831 hybrid contribution -1.847 0.631 1.514 2.470 sum -0.567 7.795 -1.376 7.936 Atomic orbital electron populations 1.22765 0.87709 1.01268 0.97078 1.89632 1.14571 1.22293 1.94431 1.23123 0.97230 0.88022 0.97494 1.22413 0.90460 0.98416 0.95536 1.61805 1.58885 1.04551 0.99874 1.20982 0.96823 0.96923 0.92644 1.21313 1.00723 0.98794 0.96877 1.21072 0.97091 0.90687 0.92499 0.91161 1.21801 1.00184 1.01288 0.96049 1.59540 1.12403 1.36492 1.24482 1.22597 0.96089 0.97318 0.88418 1.19582 0.92805 0.82729 0.96881 0.96440 1.21419 1.34778 1.02498 0.91572 0.91049 1.24777 0.95355 0.97083 0.95672 1.69946 1.41500 1.13845 1.27604 0.86654 0.77651 0.78663 0.85576 1.20036 1.21556 1.21634 0.90850 0.96494 0.96358 0.95694 0.95527 0.87549 0.92883 0.93352 0.95388 0.92034 0.92759 0.93386 0.92640 0.93688 0.85345 0.90237 0.93279 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 11.01 101.05 1.11 1.29 16 2 O -0.29 -6.54 5.54 -35.23 -0.20 -6.74 16 3 C 0.02 0.38 5.77 37.16 0.21 0.60 16 4 C 0.06 1.15 5.47 -3.82 -0.02 1.13 16 5 N -0.53 -10.80 4.61 -232.65 -1.07 -11.88 16 6 C 0.05 0.99 3.71 -6.50 -0.02 0.97 16 7 C -0.14 -2.26 4.97 -29.34 -0.15 -2.41 16 8 C 0.10 1.78 2.72 -68.48 -0.19 1.59 16 9 H 0.07 1.49 6.96 -51.93 -0.36 1.13 16 10 C -0.14 -2.05 9.45 37.16 0.35 -1.70 16 11 N -0.70 -13.91 6.18 -106.30 -0.66 -14.57 16 12 C 0.08 1.98 5.79 -2.62 -0.02 1.97 16 13 C 0.19 4.47 0.86 -69.79 -0.06 4.41 16 14 H 0.02 0.49 6.11 -51.93 -0.32 0.17 16 15 C -0.46 -11.81 4.47 -34.44 -0.15 -11.96 16 16 H 0.07 1.83 4.65 -52.49 -0.24 1.58 16 17 C 0.07 1.93 4.89 -17.82 -0.09 1.85 16 18 N -0.89 -24.75 11.99 55.43 0.66 -24.08 16 19 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 24 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.03 0.50 6.45 -51.93 -0.33 0.16 16 28 H 0.11 2.25 5.05 -51.93 -0.26 1.98 16 29 H 0.05 0.89 8.13 -51.93 -0.42 0.47 16 30 H 0.05 0.80 7.81 -51.93 -0.41 0.39 16 31 H 0.03 0.57 6.71 -51.93 -0.35 0.22 16 32 H 0.06 0.99 7.62 -51.93 -0.40 0.60 16 33 H 0.05 0.79 8.00 -51.93 -0.42 0.37 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.04 0.60 8.14 -51.94 -0.42 0.18 16 37 H 0.33 6.24 8.08 -39.29 -0.32 5.92 16 38 H 0.08 2.11 7.05 -51.93 -0.37 1.75 16 39 H 0.05 1.19 7.96 -51.93 -0.41 0.78 16 40 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 294.18 15.07 4.43 4.43 Total: -1.00 -26.80 294.18 -7.56 -34.36 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -6.70 Total: 4.50 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: 0.98 Total: -2.28 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -1.06 Total: -50.53 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.20 Total: -6.74 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -26.80 -7.56 -34.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220568955.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.027 kcal (2) G-P(sol) polarization free energy of solvation -26.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds