Wall clock time and date at job start Mon Mar 30 2020 04:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99802 * 2 1 4 4 C 1.53007 * 109.46962 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.46820 * 67.43438 * 4 3 2 6 6 C 1.47961 * 111.03871 * 55.91049 * 5 4 3 7 7 C 1.46136 * 112.27559 * 156.43493 * 6 5 4 8 8 C 1.54246 * 111.83954 * 60.90950 * 7 6 5 9 9 H 1.09000 * 109.61117 * 41.16718 * 8 7 6 10 10 C 1.52996 * 109.60876 * 161.67097 * 8 7 6 11 11 N 1.44253 * 108.64597 * 281.42093 * 8 7 6 12 12 C 1.48208 * 114.27292 * 93.39271 * 11 8 7 13 13 C 1.44255 * 111.00152 * 293.29344 * 5 4 3 14 14 H 1.08997 * 108.86964 * 96.34692 * 13 5 4 15 15 C 1.50706 * 108.78617 * 337.87179 * 13 5 4 16 16 H 1.07998 * 119.99275 * 350.33882 * 15 13 5 17 17 C 1.37872 * 120.00131 * 170.33509 * 15 13 5 18 18 N 1.31515 * 120.00220 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 119.99965 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47117 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.47173 * 120.00488 * 19 17 15 22 22 H 1.48501 * 109.47146 * 240.00341 * 19 17 15 23 23 H 1.08997 * 109.47121 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47182 * 300.00263 * 1 2 3 25 25 H 1.09006 * 109.47014 * 60.00396 * 1 2 3 26 26 H 1.08999 * 109.47750 * 59.99937 * 3 2 1 27 27 H 1.08999 * 109.47043 * 299.99406 * 3 2 1 28 28 H 1.08997 * 109.46954 * 307.43672 * 4 3 2 29 29 H 1.08996 * 109.47077 * 187.43284 * 4 3 2 30 30 H 1.08998 * 108.82484 * 35.75881 * 6 5 4 31 31 H 1.08996 * 108.95937 * 277.20287 * 6 5 4 32 32 H 1.09000 * 108.99489 * 300.32408 * 7 6 5 33 33 H 1.09000 * 108.99056 * 181.49544 * 7 6 5 34 34 H 1.09006 * 109.46924 * 60.00450 * 10 8 7 35 35 H 1.09005 * 109.46824 * 179.97438 * 10 8 7 36 36 H 1.08989 * 109.47685 * 299.99931 * 10 8 7 37 37 H 1.00898 * 111.00050 * 326.93815 * 11 8 7 38 38 H 1.09002 * 108.81540 * 78.98755 * 12 11 8 39 39 H 1.08996 * 108.82253 * 197.39872 * 12 11 8 40 40 H 0.96996 * 120.00397 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9821 0.6159 -1.2781 6 6 3.4919 1.4219 -2.4180 7 6 4.3176 1.2525 -3.6118 8 6 4.3297 -0.2112 -4.0981 9 1 3.3266 -0.6308 -4.0206 10 6 4.8014 -0.2651 -5.5525 11 7 5.2355 -0.9659 -3.2670 12 6 4.5888 -1.6389 -2.1158 13 6 3.5431 -0.7511 -1.4173 14 1 2.6215 -0.7679 -1.9992 15 6 3.2638 -1.3132 -0.0472 16 1 3.5510 -0.7574 0.8331 17 6 2.6419 -2.5368 0.0824 18 7 2.2926 -3.2138 -0.9897 19 14 2.2964 -3.2338 1.7807 20 1 2.7842 -2.2850 2.8137 21 1 0.8345 -3.4352 1.9451 22 1 2.9957 -4.5349 1.9334 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 1.6886 1.8464 0.8899 27 1 1.6886 1.8463 -0.8900 28 1 3.8480 0.5334 0.8169 29 1 3.9780 2.1718 0.1336 30 1 3.4950 2.4737 -2.1321 31 1 2.4697 1.1229 -2.6495 32 1 5.3384 1.5590 -3.3836 33 1 3.9262 1.8873 -4.4067 34 1 5.8075 0.1483 -5.6237 35 1 4.8095 -1.3004 -5.8937 36 1 4.1240 0.3179 -6.1762 37 1 6.0094 -0.3940 -2.9635 38 1 4.1000 -2.5470 -2.4686 39 1 5.3563 -1.9118 -1.3915 40 1 1.8554 -4.0748 -0.8986 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220568955.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:49 Heat of formation + Delta-G solvation = -27.056734 kcal Electronic energy + Delta-G solvation = -19828.022993 eV Core-core repulsion = 17064.316989 eV Total energy + Delta-G solvation = -2763.706005 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.71259 -38.33229 -36.26381 -34.92936 -32.91700 -31.10567 -29.42745 -27.99781 -26.68148 -25.74775 -23.98528 -23.37101 -21.29075 -20.41711 -18.16253 -17.43445 -17.05699 -16.63610 -16.13194 -16.06054 -15.95950 -15.44787 -14.92063 -14.59377 -14.10515 -13.91190 -13.59955 -13.32439 -13.05103 -12.89595 -12.74542 -12.58905 -12.49810 -12.40528 -12.16210 -11.97435 -11.68524 -11.53253 -11.32137 -11.20052 -10.53409 -10.29459 -10.09683 -9.03488 -8.68266 -7.94043 -5.84862 1.41116 1.45482 1.53046 2.54251 3.10981 3.34072 3.61866 3.82738 3.87466 4.28246 4.36345 4.39959 4.49442 4.54915 4.59278 4.61368 4.71142 4.76155 4.80567 4.91618 4.93323 5.02045 5.07466 5.08860 5.14269 5.16668 5.33187 5.43503 5.56653 5.60229 5.91832 5.95228 6.15351 6.49418 6.60155 6.69180 6.85066 7.00621 7.18937 7.70729 9.16066 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.023958 B = 0.010656 C = 0.008641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.439099 B = 2626.894114 C = 3239.504603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.331 6.331 3 C 0.020 3.980 4 C 0.058 3.942 5 N -0.530 5.530 6 C 0.057 3.943 7 C -0.131 4.131 8 C 0.095 3.905 9 H 0.030 0.970 10 C -0.126 4.126 11 N -0.696 5.696 12 C 0.099 3.901 13 C 0.210 3.790 14 H -0.026 1.026 15 C -0.457 4.457 16 H 0.073 0.927 17 C 0.031 3.969 18 N -0.923 5.923 19 Si 0.931 3.069 20 H -0.267 1.267 21 H -0.293 1.293 22 H -0.293 1.293 23 H 0.054 0.946 24 H 0.042 0.958 25 H 0.027 0.973 26 H 0.048 0.952 27 H 0.033 0.967 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.003 0.997 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.043 0.957 36 H 0.066 0.934 37 H 0.339 0.661 38 H 0.040 0.960 39 H 0.035 0.965 40 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.557 10.649 -2.453 11.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.249 6.249 3 C -0.058 4.058 4 C -0.070 4.070 5 N -0.253 5.253 6 C -0.071 4.071 7 C -0.170 4.170 8 C -0.017 4.017 9 H 0.048 0.952 10 C -0.183 4.183 11 N -0.326 5.326 12 C -0.031 4.031 13 C 0.100 3.900 14 H -0.008 1.008 15 C -0.495 4.495 16 H 0.091 0.909 17 C -0.167 4.167 18 N -0.565 5.565 19 Si 0.760 3.240 20 H -0.192 1.192 21 H -0.220 1.220 22 H -0.220 1.220 23 H 0.073 0.927 24 H 0.061 0.939 25 H 0.046 0.954 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.104 0.896 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.021 0.979 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.157 0.843 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.052 9.783 -2.889 10.405 hybrid contribution -2.107 -0.065 1.503 2.589 sum -0.054 9.718 -1.386 9.816 Atomic orbital electron populations 1.22729 0.86257 1.00655 0.98758 1.89439 1.16067 1.24594 1.94772 1.23212 0.96940 0.86811 0.98839 1.22462 0.90848 0.99610 0.94063 1.61798 1.58837 1.03268 1.01441 1.21043 0.95717 0.97775 0.92523 1.21249 1.01329 0.97609 0.96855 1.21151 0.94750 0.91587 0.94170 0.95172 1.21705 1.01634 1.01270 0.93739 1.59474 1.12718 1.37370 1.23002 1.22183 0.95308 0.96456 0.89156 1.19185 0.90868 0.84726 0.95192 1.00816 1.21669 1.33374 1.02030 0.92447 0.90905 1.25295 0.95934 0.97765 0.97749 1.70084 1.43255 1.14070 1.29114 0.85916 0.77010 0.77982 0.83044 1.19166 1.22022 1.22029 0.92729 0.93907 0.95398 0.93345 0.94903 0.89592 0.89248 0.90586 0.97886 0.90646 0.89849 0.91581 0.93765 0.91476 0.84253 0.94128 0.94649 0.94069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.50 11.01 113.37 1.25 1.75 16 2 O -0.33 -14.70 5.54 -148.98 -0.83 -15.52 16 3 C 0.02 0.73 5.77 71.98 0.42 1.15 16 4 C 0.06 2.10 5.47 86.31 0.47 2.57 16 5 N -0.53 -21.01 4.61 -889.97 -4.10 -25.11 16 6 C 0.06 1.95 3.71 83.99 0.31 2.27 16 7 C -0.13 -3.93 4.97 28.91 0.14 -3.79 16 8 C 0.09 3.34 2.72 45.83 0.12 3.47 16 9 H 0.03 1.31 6.96 -2.39 -0.02 1.30 16 10 C -0.13 -3.53 9.45 71.98 0.68 -2.85 16 11 N -0.70 -27.47 6.18 -490.24 -3.03 -30.49 16 12 C 0.10 4.78 5.79 86.37 0.50 5.28 16 13 C 0.21 10.13 0.86 44.98 0.04 10.17 16 14 H -0.03 -1.47 6.11 -2.39 -0.01 -1.49 16 15 C -0.46 -23.57 4.47 25.60 0.11 -23.46 16 16 H 0.07 3.72 4.65 -2.91 -0.01 3.71 16 17 C 0.03 1.66 4.89 84.65 0.41 2.07 16 18 N -0.92 -53.73 11.99 21.45 0.26 -53.47 16 19 Si 0.93 44.42 29.54 68.60 2.03 46.45 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 22 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 23 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 24 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.03 1.15 6.45 -2.39 -0.02 1.13 16 28 H 0.09 3.50 5.05 -2.39 -0.01 3.49 16 29 H 0.09 2.63 8.13 -2.39 -0.02 2.61 16 30 H 0.08 2.20 7.81 -2.39 -0.02 2.19 16 31 H 0.00 0.11 6.71 -2.39 -0.02 0.10 16 32 H 0.07 2.11 7.62 -2.39 -0.02 2.09 16 33 H 0.08 2.07 8.00 -2.39 -0.02 2.05 16 34 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 35 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 36 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 37 H 0.34 12.30 8.08 -89.70 -0.72 11.58 16 38 H 0.04 2.27 7.05 -2.39 -0.02 2.26 16 39 H 0.03 1.76 7.96 -2.39 -0.02 1.74 16 40 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -60.05 294.18 -0.92 -60.97 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.29 Total: 18.55 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 4.46 Total: -1.37 kcal Atomic # 7 Polarization: -102.20 SS G_CDS: -6.87 Total: -109.08 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.83 Total: -15.52 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -60.05 -0.92 -60.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220568955.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.915 kcal (2) G-P(sol) polarization free energy of solvation -60.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds