Wall clock time and date at job start Mon Mar 30 2020 04:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42907 * 113.99925 * 2 1 4 4 C 1.52999 * 109.46704 * 180.02562 * 3 2 1 5 5 N 1.46896 * 109.47499 * 61.71551 * 4 3 2 6 6 C 1.48070 * 110.99737 * 59.43645 * 5 4 3 7 7 C 1.53697 * 112.47169 * 192.19423 * 6 5 4 8 8 C 1.50798 * 112.09332 * 318.55304 * 7 6 5 9 9 H 1.09003 * 109.80191 * 332.74874 * 8 7 6 10 10 C 1.53002 * 109.63217 * 212.25184 * 8 7 6 11 11 N 1.47908 * 108.49534 * 92.55236 * 8 7 6 12 12 C 1.40010 * 114.07163 * 280.06649 * 11 8 7 13 13 C 1.44569 * 111.00173 * 291.74807 * 5 4 3 14 14 H 1.08999 * 109.58209 * 100.40402 * 13 5 4 15 15 C 1.50704 * 109.57375 * 340.15495 * 13 5 4 16 16 H 1.08006 * 119.99921 * 5.31363 * 15 13 5 17 17 C 1.37875 * 120.00281 * 185.31653 * 15 13 5 18 18 N 1.31520 * 119.99963 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 120.00102 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47136 * 90.00037 * 19 17 15 21 21 H 1.48502 * 109.46874 * 210.00011 * 19 17 15 22 22 H 1.48502 * 109.47187 * 329.99568 * 19 17 15 23 23 H 1.09004 * 109.47085 * 59.99823 * 1 2 3 24 24 H 1.08994 * 109.47087 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46899 * 300.00138 * 1 2 3 26 26 H 1.08998 * 109.46840 * 60.00202 * 3 2 1 27 27 H 1.08999 * 109.46849 * 300.00161 * 3 2 1 28 28 H 1.08998 * 109.46767 * 301.71171 * 4 3 2 29 29 H 1.09004 * 109.46803 * 181.71829 * 4 3 2 30 30 H 1.08998 * 108.88020 * 71.42333 * 6 5 4 31 31 H 1.09001 * 108.80233 * 312.91447 * 6 5 4 32 32 H 1.08998 * 108.95823 * 197.87455 * 7 6 5 33 33 H 1.09002 * 108.95647 * 79.22618 * 7 6 5 34 34 H 1.09001 * 109.47294 * 300.99738 * 10 8 7 35 35 H 1.09000 * 109.47001 * 60.99999 * 10 8 7 36 36 H 1.09003 * 109.47413 * 180.99754 * 10 8 7 37 37 H 1.00899 * 110.99802 * 46.36057 * 11 8 7 38 38 H 1.08997 * 108.96200 * 182.48021 * 12 11 8 39 39 H 1.08998 * 108.96037 * 301.13774 * 12 11 8 40 40 H 0.97000 * 119.99821 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9713 0.4920 -1.2205 6 6 3.5419 1.2285 -2.4311 7 6 3.7106 0.3992 -3.7141 8 6 5.0063 -0.3722 -3.7245 9 1 5.7481 0.1436 -3.1147 10 6 5.5186 -0.4972 -5.1608 11 7 4.7549 -1.7192 -3.1676 12 6 4.7066 -1.7590 -1.7689 13 6 3.5618 -0.8944 -1.2036 14 1 2.6698 -1.0194 -1.8175 15 6 3.2630 -1.3153 0.2123 16 1 3.2878 -0.5865 1.0090 17 6 2.9581 -2.6308 0.4907 18 7 2.9275 -3.5182 -0.4795 19 14 2.5871 -3.1524 2.2456 20 1 1.1309 -3.0195 2.5041 21 1 2.9973 -4.5665 2.4389 22 1 3.3385 -2.2858 3.1889 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.6886 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8553 0.6173 0.8734 29 1 3.9788 2.1800 0.0302 30 1 4.1348 2.1389 -2.5190 31 1 2.4920 1.5009 -2.3226 32 1 3.6902 1.0689 -4.5739 33 1 2.8802 -0.3023 -3.7940 34 1 4.7721 -1.0070 -5.7698 35 1 5.7030 0.4967 -5.5685 36 1 6.4458 -1.0703 -5.1673 37 1 3.9245 -2.1275 -3.5699 38 1 4.5625 -2.7909 -1.4487 39 1 5.6543 -1.3957 -1.3714 40 1 2.7126 -4.4436 -0.2836 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220569019.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:52 Heat of formation + Delta-G solvation = -20.845854 kcal Electronic energy + Delta-G solvation = -19808.765589 eV Core-core repulsion = 17045.328909 eV Total energy + Delta-G solvation = -2763.436681 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.65622 -38.46578 -36.24743 -35.03204 -32.95671 -30.96435 -29.42256 -27.95179 -26.68734 -25.40021 -24.33930 -23.06032 -21.65923 -20.13702 -18.44269 -17.45739 -16.93347 -16.65315 -16.21674 -16.05797 -15.78933 -15.40987 -14.91976 -14.56652 -14.28245 -13.90094 -13.64440 -13.19439 -13.09017 -12.84537 -12.75559 -12.66442 -12.52069 -12.22308 -12.17483 -11.68301 -11.63309 -11.58175 -11.41539 -11.24556 -10.64003 -10.22524 -10.08678 -8.93311 -8.49629 -7.88225 -5.83512 1.44026 1.46770 1.53524 2.55417 3.05322 3.36562 3.67376 3.84361 3.99366 4.19941 4.26862 4.38703 4.45249 4.49980 4.58020 4.65080 4.68685 4.79174 4.85334 4.90535 4.95966 4.96693 5.01034 5.08669 5.20281 5.22216 5.39854 5.48549 5.50323 5.64448 5.91863 6.11874 6.31729 6.58652 6.64008 6.81023 6.88721 7.08002 7.23720 7.71915 9.15578 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022650 B = 0.010998 C = 0.008506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.925762 B = 2545.241109 C = 3290.876549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.340 6.340 3 C 0.019 3.981 4 C 0.058 3.942 5 N -0.550 5.550 6 C 0.058 3.942 7 C -0.137 4.137 8 C 0.094 3.906 9 H 0.067 0.933 10 C -0.129 4.129 11 N -0.693 5.693 12 C 0.082 3.918 13 C 0.215 3.785 14 H -0.030 1.030 15 C -0.457 4.457 16 H 0.077 0.923 17 C 0.013 3.987 18 N -0.920 5.920 19 Si 0.938 3.062 20 H -0.288 1.288 21 H -0.295 1.295 22 H -0.271 1.271 23 H 0.033 0.967 24 H 0.060 0.940 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.021 0.979 32 H 0.090 0.910 33 H 0.032 0.968 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.327 0.673 38 H 0.082 0.918 39 H 0.022 0.978 40 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.444 9.957 -4.068 10.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.259 6.259 3 C -0.059 4.059 4 C -0.070 4.070 5 N -0.274 5.274 6 C -0.069 4.069 7 C -0.176 4.176 8 C -0.015 4.015 9 H 0.086 0.914 10 C -0.186 4.186 11 N -0.322 5.322 12 C -0.050 4.050 13 C 0.106 3.894 14 H -0.013 1.013 15 C -0.495 4.495 16 H 0.095 0.905 17 C -0.184 4.184 18 N -0.563 5.563 19 Si 0.766 3.234 20 H -0.215 1.215 21 H -0.222 1.222 22 H -0.196 1.196 23 H 0.051 0.949 24 H 0.079 0.921 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.039 0.961 32 H 0.108 0.892 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.145 0.855 38 H 0.099 0.901 39 H 0.041 0.959 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.796 9.445 -4.101 10.328 hybrid contribution -2.601 -0.121 1.217 2.874 sum -1.805 9.324 -2.885 9.925 Atomic orbital electron populations 1.22762 0.85372 1.01137 0.99099 1.89272 1.16722 1.25010 1.94859 1.23202 0.97038 0.86530 0.99126 1.22378 0.90806 0.98509 0.95335 1.61157 1.61385 1.03551 1.01299 1.22409 0.97615 0.96876 0.90024 1.22105 0.98262 0.99612 0.97621 1.21242 0.95750 0.88129 0.96384 0.91434 1.21741 1.00858 1.01967 0.94077 1.58279 1.43520 1.21955 1.08413 1.20927 0.95992 1.02358 0.85771 1.19418 0.91049 0.83662 0.95268 1.01261 1.21816 1.40483 0.93202 0.94034 0.90530 1.25398 0.96782 0.97244 0.98934 1.69966 1.51676 1.02469 1.32206 0.85871 0.77771 0.76834 0.82877 1.21484 1.22173 1.19604 0.94872 0.92116 0.93892 0.93194 0.94219 0.89814 0.89588 0.90399 0.96089 0.89188 0.94867 0.93018 0.90637 0.92780 0.85525 0.90058 0.95906 0.93953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.48 11.01 113.37 1.25 1.73 16 2 O -0.34 -14.78 5.60 -148.98 -0.83 -15.62 16 3 C 0.02 0.69 5.67 71.98 0.41 1.10 16 4 C 0.06 2.14 5.56 86.30 0.48 2.62 16 5 N -0.55 -22.48 4.12 -874.12 -3.60 -26.08 16 6 C 0.06 2.00 5.34 86.31 0.46 2.46 16 7 C -0.14 -4.48 4.90 30.11 0.15 -4.34 16 8 C 0.09 3.24 2.74 44.01 0.12 3.36 16 9 H 0.07 2.51 7.59 -2.39 -0.02 2.49 16 10 C -0.13 -3.46 9.30 71.98 0.67 -2.79 16 11 N -0.69 -29.28 6.08 -505.85 -3.07 -32.35 16 12 C 0.08 4.02 5.34 87.95 0.47 4.49 16 13 C 0.22 10.46 1.20 45.01 0.05 10.52 16 14 H -0.03 -1.68 6.54 -2.39 -0.02 -1.69 16 15 C -0.46 -23.82 4.99 25.60 0.13 -23.69 16 16 H 0.08 3.94 4.09 -2.91 -0.01 3.93 16 17 C 0.01 0.70 5.21 84.65 0.44 1.14 16 18 N -0.92 -52.65 11.00 21.45 0.24 -52.41 16 19 Si 0.94 44.45 29.54 68.60 2.03 46.48 16 20 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 21 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 23 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 24 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.04 1.34 6.04 -2.39 -0.01 1.33 16 28 H 0.08 3.50 5.23 -2.39 -0.01 3.49 16 29 H 0.09 2.63 8.14 -2.38 -0.02 2.61 16 30 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.02 0.74 5.64 -2.39 -0.01 0.73 16 32 H 0.09 2.34 7.72 -2.39 -0.02 2.32 16 33 H 0.03 1.24 6.80 -2.39 -0.02 1.23 16 34 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.07 1.62 8.11 -2.39 -0.02 1.60 16 36 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.33 14.28 8.21 -89.69 -0.74 13.54 16 38 H 0.08 4.59 5.38 -2.39 -0.01 4.58 16 39 H 0.02 1.16 8.07 -2.39 -0.02 1.14 16 40 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -59.19 291.77 -0.33 -59.53 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: 0.29 Total: 23.86 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: 4.63 Total: -3.41 kcal Atomic # 7 Polarization: -104.40 SS G_CDS: -6.44 Total: -110.84 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -0.83 Total: -15.62 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -59.19 -0.33 -59.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220569019.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.682 kcal (2) G-P(sol) polarization free energy of solvation -59.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds