Wall clock time and date at job start Mon Mar 30 2020 05:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08991 * 109.47091 * 2 1 4 4 C 1.50706 * 109.46722 * 240.00282 * 2 1 3 5 5 H 1.07999 * 119.99957 * 240.00303 * 4 2 1 6 6 C 1.37881 * 119.99722 * 60.00179 * 4 2 1 7 7 N 1.31507 * 119.99945 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99577 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47391 * 59.99965 * 8 6 4 10 10 H 1.48499 * 109.46851 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46980 * 299.99864 * 8 6 4 12 12 N 1.46899 * 109.47005 * 120.00398 * 2 1 3 13 13 C 1.46905 * 110.99771 * 58.95166 * 12 2 1 14 14 C 1.46898 * 111.00270 * 294.99920 * 12 2 1 15 15 C 1.52996 * 109.46907 * 190.00207 * 14 12 2 16 16 H 1.08996 * 109.47010 * 304.99047 * 15 14 12 17 17 O 1.42891 * 109.47391 * 64.99906 * 15 14 12 18 18 C 1.53004 * 109.46700 * 184.99598 * 15 14 12 19 19 N 1.46901 * 109.46916 * 179.97438 * 18 15 14 20 20 C 1.46905 * 110.99870 * 180.02562 * 19 18 15 21 21 C 1.53001 * 117.50003 * 223.74802 * 20 19 18 22 22 C 1.52997 * 117.49675 * 155.08687 * 20 19 18 23 23 H 1.08994 * 109.46964 * 59.99094 * 1 2 3 24 24 H 1.08991 * 109.47091 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46295 * 299.99926 * 1 2 3 26 26 H 0.97003 * 119.99615 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.47263 * 296.04217 * 13 12 2 28 28 H 1.09001 * 109.47102 * 56.04386 * 13 12 2 29 29 H 1.09004 * 109.46599 * 176.04262 * 13 12 2 30 30 H 1.09002 * 109.47188 * 69.99557 * 14 12 2 31 31 H 1.08999 * 109.46615 * 310.00334 * 14 12 2 32 32 H 0.96703 * 114.00376 * 59.99604 * 17 15 14 33 33 H 1.09004 * 109.46889 * 60.00145 * 18 15 14 34 34 H 1.08995 * 109.47384 * 299.99786 * 18 15 14 35 35 H 1.00901 * 111.00067 * 303.95263 * 19 18 15 36 36 H 1.08999 * 115.54683 * 9.42062 * 20 19 18 37 37 H 1.09005 * 117.49640 * 359.97438 * 21 20 19 38 38 H 1.08994 * 117.50079 * 145.01968 * 21 20 19 39 39 H 1.09006 * 117.49877 * 214.97516 * 22 20 19 40 40 H 1.08996 * 117.50022 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6033 8 14 2.3224 -1.1193 -4.0081 9 1 1.8279 -2.5195 -4.0084 10 1 1.8277 -0.4189 -5.2205 11 1 3.8073 -1.1188 -4.0079 12 7 2.0197 -0.6926 1.1994 13 6 1.5283 -2.0762 1.2458 14 6 1.6488 0.0389 2.4181 15 6 2.3790 -0.5666 3.6185 16 1 2.1676 -1.6345 3.6714 17 8 3.7861 -0.3662 3.4708 18 6 1.8992 0.1126 4.9028 19 7 2.5999 -0.4692 6.0555 20 6 2.1631 0.1596 7.3093 21 6 3.2432 0.5287 8.3282 22 6 2.3098 -0.6546 8.5963 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8900 26 1 0.7087 1.1615 -3.4843 27 1 0.4419 -2.0731 1.3346 28 1 1.8166 -2.5950 0.3316 29 1 1.9618 -2.5870 2.1057 30 1 0.5723 -0.0346 2.5726 31 1 1.9298 1.0868 2.3125 32 1 4.0476 0.5633 3.4169 33 1 0.8259 -0.0403 5.0155 34 1 2.1106 1.1805 4.8499 35 1 2.4719 -1.4695 6.0893 36 1 1.3008 0.8213 7.2278 37 1 4.2778 0.3045 8.0684 38 1 3.0913 1.4330 8.9173 39 1 1.5442 -0.5280 9.3619 40 1 2.7299 -1.6568 8.5127 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220917431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:41 Heat of formation + Delta-G solvation = -15.695385 kcal Electronic energy + Delta-G solvation = -17865.923716 eV Core-core repulsion = 15102.710376 eV Total energy + Delta-G solvation = -2763.213340 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -38.58506 -37.54349 -35.95216 -33.12714 -32.65663 -29.65007 -28.04378 -25.82334 -25.13178 -23.29558 -22.56079 -21.45890 -20.83651 -19.19529 -16.49779 -16.29739 -16.06069 -15.55790 -15.21046 -14.68901 -14.30400 -14.22889 -13.51063 -13.11997 -12.90182 -12.88746 -12.26447 -11.95445 -11.68214 -11.51606 -11.16355 -11.06177 -10.87779 -10.79920 -10.73418 -10.58419 -10.43765 -10.38059 -10.00247 -9.95329 -9.36065 -8.84652 -8.38071 -8.36728 -7.07605 -5.99285 -4.02600 3.34705 3.38485 3.42168 3.63359 3.80487 4.43380 4.73001 4.75287 4.79073 4.90399 5.05713 5.21895 5.31656 5.33787 5.43859 5.50324 5.62625 5.69736 5.75020 5.77967 5.99485 6.12391 6.25038 6.36977 6.45620 6.67346 6.81914 6.91208 6.91726 7.12384 7.21383 7.49515 7.72091 7.85458 8.10512 8.20104 8.40423 8.62861 9.03462 9.62348 11.07994 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.057394 B = 0.004107 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.739049 B = 6816.661628 C = 6939.333356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.210 3.790 3 H 0.038 0.962 4 C -0.499 4.499 5 H 0.063 0.937 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.276 1.276 12 N -0.523 5.523 13 C 0.033 3.967 14 C 0.025 3.975 15 C 0.116 3.884 16 H 0.092 0.908 17 O -0.537 6.537 18 C 0.028 3.972 19 N -0.648 5.648 20 C 0.016 3.984 21 C -0.170 4.170 22 C -0.196 4.196 23 H 0.088 0.912 24 H 0.029 0.971 25 H 0.005 0.995 26 H 0.260 0.740 27 H 0.013 0.987 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.030 0.970 31 H 0.068 0.932 32 H 0.368 0.632 33 H 0.037 0.963 34 H 0.076 0.924 35 H 0.343 0.657 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.099 -1.014 17.414 17.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.104 3.896 3 H 0.056 0.944 4 C -0.537 4.537 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.246 5.246 13 C -0.115 4.115 14 C -0.105 4.105 15 C 0.055 3.945 16 H 0.110 0.890 17 O -0.340 6.340 18 C -0.102 4.102 19 N -0.279 5.279 20 C -0.095 4.095 21 C -0.208 4.208 22 C -0.235 4.235 23 H 0.106 0.894 24 H 0.048 0.952 25 H 0.024 0.976 26 H 0.070 0.930 27 H 0.031 0.969 28 H 0.093 0.907 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.214 0.786 33 H 0.055 0.945 34 H 0.095 0.905 35 H 0.162 0.838 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.892 -1.168 17.157 17.220 hybrid contribution -1.719 -0.094 -0.702 1.860 sum -0.828 -1.262 16.455 16.524 Atomic orbital electron populations 1.22410 1.01047 0.99284 1.00403 1.19319 0.89563 0.94540 0.86157 0.94438 1.21101 1.30479 1.12492 0.89674 0.91917 1.24929 0.95242 0.95148 0.99010 1.69875 1.37134 1.23124 1.23467 0.86573 0.79303 0.79560 0.82044 1.20392 1.21444 1.20170 1.62259 1.59213 1.01662 1.01498 1.22270 0.96322 0.91472 1.01463 1.22690 0.96989 0.98706 0.92085 1.21900 0.82329 0.99743 0.90508 0.89038 1.86580 1.21189 1.30402 1.95859 1.22784 0.95805 1.00268 0.91317 1.60108 1.58974 1.08648 1.00172 1.22407 0.98875 1.01993 0.86238 1.23131 0.97213 0.98367 1.02093 1.23255 1.03575 0.97056 0.99566 0.89369 0.95157 0.97569 0.92997 0.96875 0.90661 0.93894 0.95206 0.91306 0.78558 0.94517 0.90550 0.83791 0.88524 0.88203 0.89060 0.88940 0.88565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.16 8.27 37.16 0.31 -3.85 16 2 C 0.21 5.30 2.34 -68.86 -0.16 5.14 16 3 H 0.04 1.04 8.03 -51.93 -0.42 0.62 16 4 C -0.50 -13.77 7.88 -34.44 -0.27 -14.04 16 5 H 0.06 1.74 6.77 -52.49 -0.36 1.39 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -25.62 11.32 55.43 0.63 -25.00 16 8 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 12 N -0.52 -11.25 4.69 -236.28 -1.11 -12.36 16 13 C 0.03 0.66 8.56 60.07 0.51 1.18 16 14 C 0.03 0.44 4.03 -3.83 -0.02 0.42 16 15 C 0.12 1.70 3.13 -26.73 -0.08 1.61 16 16 H 0.09 1.39 6.33 -51.93 -0.33 1.06 16 17 O -0.54 -8.74 13.15 -35.23 -0.46 -9.20 16 18 C 0.03 0.34 5.20 -3.82 -0.02 0.32 16 19 N -0.65 -7.42 6.61 -106.72 -0.71 -8.13 16 20 C 0.02 0.15 6.25 -67.71 -0.42 -0.27 16 21 C -0.17 -1.55 10.46 -26.69 -0.28 -1.83 16 22 C -0.20 -1.65 10.34 -26.69 -0.28 -1.93 16 23 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 24 H 0.03 0.71 6.48 -51.93 -0.34 0.37 16 25 H 0.01 0.12 6.75 -51.93 -0.35 -0.23 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.01 0.25 6.51 -51.93 -0.34 -0.09 16 28 H 0.07 1.63 6.41 -51.93 -0.33 1.29 16 29 H 0.04 0.75 6.37 -51.93 -0.33 0.42 16 30 H 0.03 0.52 6.94 -51.93 -0.36 0.16 16 31 H 0.07 1.20 8.00 -51.93 -0.42 0.78 16 32 H 0.37 5.05 9.05 45.56 0.41 5.47 16 33 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.34 3.76 8.68 -39.29 -0.34 3.42 16 36 H 0.10 0.92 7.90 -51.93 -0.41 0.51 16 37 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 315.86 15.07 4.76 4.76 Total: -1.00 -29.45 315.86 -8.61 -38.05 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -5.89 Total: 7.11 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -0.80 Total: -11.74 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: -1.19 Total: -45.48 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.46 Total: -9.20 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.45 -8.61 -38.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220917431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.357 kcal (2) G-P(sol) polarization free energy of solvation -29.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds