Wall clock time and date at job start Mon Mar 30 2020 05:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08991 * 109.47091 * 2 1 4 4 C 1.50706 * 109.46722 * 240.00282 * 2 1 3 5 5 H 1.07999 * 119.99957 * 240.00303 * 4 2 1 6 6 C 1.37881 * 119.99722 * 60.00179 * 4 2 1 7 7 N 1.31507 * 119.99945 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99577 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47391 * 59.99965 * 8 6 4 10 10 H 1.48499 * 109.46851 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46980 * 299.99864 * 8 6 4 12 12 N 1.46899 * 109.47005 * 120.00398 * 2 1 3 13 13 C 1.46905 * 110.99771 * 58.95166 * 12 2 1 14 14 C 1.46898 * 111.00270 * 294.99920 * 12 2 1 15 15 C 1.52996 * 109.46907 * 190.00207 * 14 12 2 16 16 H 1.08996 * 109.47010 * 304.99047 * 15 14 12 17 17 O 1.42891 * 109.47391 * 64.99906 * 15 14 12 18 18 C 1.53004 * 109.46700 * 184.99598 * 15 14 12 19 19 N 1.46901 * 109.46916 * 179.97438 * 18 15 14 20 20 C 1.46905 * 110.99870 * 180.02562 * 19 18 15 21 21 C 1.53001 * 117.50003 * 223.74802 * 20 19 18 22 22 C 1.52997 * 117.49675 * 155.08687 * 20 19 18 23 23 H 1.08994 * 109.46964 * 59.99094 * 1 2 3 24 24 H 1.08991 * 109.47091 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46295 * 299.99926 * 1 2 3 26 26 H 0.97003 * 119.99615 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.47263 * 296.04217 * 13 12 2 28 28 H 1.09001 * 109.47102 * 56.04386 * 13 12 2 29 29 H 1.09004 * 109.46599 * 176.04262 * 13 12 2 30 30 H 1.09002 * 109.47188 * 69.99557 * 14 12 2 31 31 H 1.08999 * 109.46615 * 310.00334 * 14 12 2 32 32 H 0.96703 * 114.00376 * 59.99604 * 17 15 14 33 33 H 1.09004 * 109.46889 * 60.00145 * 18 15 14 34 34 H 1.08995 * 109.47384 * 299.99786 * 18 15 14 35 35 H 1.00901 * 111.00067 * 303.95263 * 19 18 15 36 36 H 1.08999 * 115.54683 * 9.42062 * 20 19 18 37 37 H 1.09005 * 117.49640 * 359.97438 * 21 20 19 38 38 H 1.08994 * 117.50079 * 145.01968 * 21 20 19 39 39 H 1.09006 * 117.49877 * 214.97516 * 22 20 19 40 40 H 1.08996 * 117.50022 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6033 8 14 2.3224 -1.1193 -4.0081 9 1 1.8279 -2.5195 -4.0084 10 1 1.8277 -0.4189 -5.2205 11 1 3.8073 -1.1188 -4.0079 12 7 2.0197 -0.6926 1.1994 13 6 1.5283 -2.0762 1.2458 14 6 1.6488 0.0389 2.4181 15 6 2.3790 -0.5666 3.6185 16 1 2.1676 -1.6345 3.6714 17 8 3.7861 -0.3662 3.4708 18 6 1.8992 0.1126 4.9028 19 7 2.5999 -0.4692 6.0555 20 6 2.1631 0.1596 7.3093 21 6 3.2432 0.5287 8.3282 22 6 2.3098 -0.6546 8.5963 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5139 0.8900 26 1 0.7087 1.1615 -3.4843 27 1 0.4419 -2.0731 1.3346 28 1 1.8166 -2.5950 0.3316 29 1 1.9618 -2.5870 2.1057 30 1 0.5723 -0.0346 2.5726 31 1 1.9298 1.0868 2.3125 32 1 4.0476 0.5633 3.4169 33 1 0.8259 -0.0403 5.0155 34 1 2.1106 1.1805 4.8499 35 1 2.4719 -1.4695 6.0893 36 1 1.3008 0.8213 7.2278 37 1 4.2778 0.3045 8.0684 38 1 3.0913 1.4330 8.9173 39 1 1.5442 -0.5280 9.3619 40 1 2.7299 -1.6568 8.5127 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220917431.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:39 Heat of formation + Delta-G solvation = -38.704575 kcal Electronic energy + Delta-G solvation = -17866.921469 eV Core-core repulsion = 15102.710376 eV Total energy + Delta-G solvation = -2764.211093 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -39.83522 -38.62666 -37.35568 -34.65927 -34.06606 -31.28441 -29.61668 -27.44086 -27.02726 -24.73739 -23.24675 -22.48861 -21.91688 -20.94800 -18.26191 -17.48735 -17.21400 -17.04704 -16.51897 -16.11435 -15.75555 -15.40036 -15.02536 -14.60227 -14.37377 -14.11917 -13.68044 -13.36371 -13.02865 -12.88059 -12.75970 -12.63633 -12.50746 -12.33939 -12.20403 -12.02049 -11.93306 -11.70190 -11.49280 -11.29322 -10.96493 -10.58513 -10.48499 -9.20946 -8.77348 -8.10520 -6.20930 1.43098 1.44869 1.52341 2.43366 2.86316 2.95201 3.18774 3.47067 3.74461 3.96492 4.04585 4.11088 4.17248 4.24142 4.38781 4.52437 4.57441 4.64485 4.70851 4.79204 4.81421 4.83339 4.85859 4.89376 5.09252 5.13695 5.16127 5.25276 5.31990 5.54652 5.71513 5.79607 6.08294 6.20941 6.37513 6.49408 6.76861 6.92642 7.04905 7.48335 8.95512 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.057394 B = 0.004107 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.739049 B = 6816.661628 C = 6939.333356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.215 3.785 3 H 0.005 0.995 4 C -0.516 4.516 5 H 0.055 0.945 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.958 3.042 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.537 5.537 13 C 0.039 3.961 14 C 0.027 3.973 15 C 0.127 3.873 16 H 0.090 0.910 17 O -0.555 6.555 18 C 0.041 3.959 19 N -0.658 5.658 20 C 0.002 3.998 21 C -0.173 4.173 22 C -0.184 4.184 23 H 0.060 0.940 24 H 0.030 0.970 25 H 0.026 0.974 26 H 0.261 0.739 27 H 0.017 0.983 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.036 0.964 31 H 0.065 0.935 32 H 0.378 0.622 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.344 0.656 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.108 0.892 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.237 -1.613 18.689 18.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.107 3.893 3 H 0.023 0.977 4 C -0.555 4.555 5 H 0.073 0.927 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.784 3.216 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.260 5.260 13 C -0.110 4.110 14 C -0.102 4.102 15 C 0.067 3.933 16 H 0.108 0.892 17 O -0.360 6.360 18 C -0.089 4.089 19 N -0.289 5.289 20 C -0.108 4.108 21 C -0.212 4.212 22 C -0.222 4.222 23 H 0.079 0.921 24 H 0.050 0.950 25 H 0.045 0.955 26 H 0.070 0.930 27 H 0.035 0.965 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.225 0.775 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.164 0.836 36 H 0.120 0.880 37 H 0.106 0.894 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.757 -1.768 18.456 18.556 hybrid contribution -1.653 0.110 -1.030 1.951 sum -0.896 -1.658 17.426 17.527 Atomic orbital electron populations 1.22198 1.00351 0.99114 1.00033 1.19067 0.89948 0.92890 0.87347 0.97694 1.21381 1.30561 1.12475 0.91069 0.92690 1.25678 0.95409 0.95824 1.01796 1.69999 1.37906 1.24188 1.24044 0.85611 0.78697 0.78699 0.78615 1.19653 1.20953 1.19934 1.62137 1.59668 1.02430 1.01745 1.22220 0.96674 0.90559 1.01500 1.22761 0.97705 0.98342 0.91424 1.21772 0.81378 0.99624 0.90516 0.89224 1.86544 1.22049 1.31499 1.95950 1.22566 0.96223 0.99968 0.90171 1.60070 1.59278 1.08905 1.00655 1.22478 0.99456 1.02870 0.85998 1.23170 0.96534 0.99413 1.02046 1.23309 1.03355 0.96739 0.98800 0.92105 0.95049 0.95458 0.92986 0.96451 0.92823 0.91295 0.94632 0.91670 0.77474 0.93525 0.90333 0.83610 0.87967 0.89352 0.87789 0.87391 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.61 8.27 71.99 0.60 -7.02 16 2 C 0.21 10.94 2.34 44.17 0.10 11.05 16 3 H 0.01 0.29 8.03 -2.39 -0.02 0.27 16 4 C -0.52 -28.81 7.88 25.60 0.20 -28.61 16 5 H 0.05 3.09 6.77 -2.91 -0.02 3.07 16 6 C 0.01 0.63 5.30 84.66 0.45 1.08 16 7 N -0.92 -53.28 11.32 21.45 0.24 -53.04 16 8 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 12 N -0.54 -22.86 4.69 -901.44 -4.23 -27.09 16 13 C 0.04 1.51 8.56 127.69 1.09 2.60 16 14 C 0.03 0.91 4.03 86.30 0.35 1.26 16 15 C 0.13 3.53 3.13 30.59 0.10 3.63 16 16 H 0.09 2.53 6.33 -2.39 -0.02 2.52 16 17 O -0.56 -17.41 13.15 -148.98 -1.96 -19.37 16 18 C 0.04 0.89 5.20 86.30 0.45 1.34 16 19 N -0.66 -13.83 6.61 -491.55 -3.25 -17.08 16 20 C 0.00 0.04 6.25 44.91 0.28 0.32 16 21 C -0.17 -2.84 10.46 30.62 0.32 -2.52 16 22 C -0.18 -2.66 10.34 30.62 0.32 -2.35 16 23 H 0.06 3.29 6.07 -2.39 -0.01 3.27 16 24 H 0.03 1.46 6.48 -2.39 -0.02 1.44 16 25 H 0.03 1.15 6.75 -2.39 -0.02 1.14 16 26 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 27 H 0.02 0.65 6.51 -2.39 -0.02 0.63 16 28 H 0.05 2.30 6.41 -2.39 -0.02 2.28 16 29 H 0.07 2.30 6.37 -2.38 -0.02 2.28 16 30 H 0.04 1.17 6.94 -2.39 -0.02 1.15 16 31 H 0.06 2.23 8.00 -2.39 -0.02 2.21 16 32 H 0.38 10.03 9.05 -74.06 -0.67 9.36 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.34 6.90 8.68 -89.69 -0.78 6.12 16 36 H 0.10 1.70 7.90 -2.39 -0.02 1.68 16 37 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -62.21 315.86 -3.33 -65.54 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: -0.42 Total: 24.00 kcal Atomic # 6 Polarization: -23.47 SS G_CDS: 4.25 Total: -19.22 kcal Atomic # 7 Polarization: -89.97 SS G_CDS: -7.24 Total: -97.21 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -1.96 Total: -19.37 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -62.21 -3.33 -65.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220917431.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.839 kcal (2) G-P(sol) polarization free energy of solvation -62.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds