Wall clock time and date at job start Mon Mar 30 2020 05:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99488 * 2 1 4 4 H 1.09000 * 109.52762 * 29.87351 * 3 2 1 5 5 C 1.53117 * 109.57417 * 269.71360 * 3 2 1 6 6 C 1.53042 * 109.27957 * 297.71929 * 5 3 2 7 7 N 1.46844 * 109.52271 * 300.82105 * 6 5 3 8 8 C 1.46903 * 111.00123 * 185.83596 * 7 6 5 9 9 H 1.09002 * 109.46938 * 184.75648 * 8 7 6 10 10 C 1.52995 * 109.47091 * 304.75642 * 8 7 6 11 11 C 1.50696 * 109.46684 * 64.75717 * 8 7 6 12 12 H 1.07998 * 120.00691 * 359.97438 * 11 8 7 13 13 C 1.37882 * 119.99508 * 179.72694 * 11 8 7 14 14 N 1.31523 * 119.99681 * 180.02562 * 13 11 8 15 15 Si 1.86799 * 120.00285 * 359.97438 * 13 11 8 16 16 H 1.48496 * 109.46924 * 90.00094 * 15 13 11 17 17 H 1.48504 * 109.47065 * 210.00420 * 15 13 11 18 18 H 1.48498 * 109.46823 * 329.99822 * 15 13 11 19 19 C 1.46857 * 111.19776 * 61.74286 * 7 6 5 20 20 H 1.08997 * 109.46305 * 58.27070 * 19 7 6 21 21 C 1.52997 * 109.45995 * 178.24184 * 19 7 6 22 22 N 1.46899 * 109.47466 * 54.33886 * 21 19 7 23 23 C 1.53039 * 109.51942 * 298.25649 * 19 7 6 24 24 H 1.08999 * 109.47487 * 300.00038 * 1 2 3 25 25 H 1.09000 * 109.47109 * 60.00244 * 1 2 3 26 26 H 1.09008 * 109.46901 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.50522 * 57.65937 * 5 3 2 28 28 H 1.09006 * 109.50407 * 177.74333 * 5 3 2 29 29 H 1.08997 * 109.46387 * 180.80549 * 6 5 3 30 30 H 1.08999 * 109.46331 * 60.83693 * 6 5 3 31 31 H 1.08999 * 109.46912 * 59.14297 * 10 8 7 32 32 H 1.08998 * 109.46996 * 179.14580 * 10 8 7 33 33 H 1.09005 * 109.47387 * 299.14409 * 10 8 7 34 34 H 0.96994 * 119.99744 * 180.02562 * 14 13 11 35 35 H 1.09009 * 109.47100 * 174.33223 * 21 19 7 36 36 H 1.08997 * 109.47523 * 294.33309 * 21 19 7 37 37 H 1.00906 * 111.00124 * 173.70511 * 22 21 19 38 38 H 1.00902 * 110.99714 * 297.65168 * 22 21 19 39 39 H 1.08999 * 109.50043 * 179.12481 * 23 19 7 40 40 H 1.09000 * 109.50195 * 299.23351 * 23 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3444 2.0006 0.5117 5 6 2.2253 1.7712 -1.4427 6 6 3.2082 0.8261 -2.1375 7 7 4.4836 0.8229 -1.4098 8 6 5.4958 0.0342 -2.1250 9 1 6.4037 -0.0219 -1.5244 10 6 4.9606 -1.3774 -2.3734 11 6 5.8061 0.6933 -3.4442 12 1 5.3015 1.6063 -3.7237 13 6 6.7379 0.1332 -4.2923 14 7 7.0091 0.7086 -5.4435 15 14 7.6162 -1.4420 -3.8057 16 1 6.8393 -2.6115 -4.2893 17 1 8.9708 -1.4616 -4.4139 18 1 7.7367 -1.5049 -2.3269 19 6 4.3099 0.3342 -0.0359 20 1 3.8914 -0.6720 -0.0585 21 6 5.6668 0.3059 0.6704 22 7 6.2927 1.6320 0.5819 23 6 3.3600 1.2647 0.7216 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 1.2737 1.7615 -1.9740 28 1 2.6313 2.7829 -1.4418 29 1 3.3746 1.1632 -3.1606 30 1 2.7948 -0.1824 -2.1503 31 1 4.0444 -1.3203 -2.9611 32 1 5.7056 -1.9579 -2.9174 33 1 4.7504 -1.8596 -1.4187 34 1 7.6643 0.3145 -6.0402 35 1 5.5256 0.0401 1.7181 36 1 6.3103 -0.4323 0.1919 37 1 7.1410 1.6686 1.1271 38 1 6.4692 1.8851 -0.3788 39 1 3.2190 0.8931 1.7365 40 1 3.7845 2.2680 0.7566 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226419860.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:40 Heat of formation + Delta-G solvation = -32.248411 kcal Electronic energy + Delta-G solvation = -19402.563933 eV Core-core repulsion = 16638.632800 eV Total energy + Delta-G solvation = -2763.931133 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.49285 -37.19658 -34.07564 -33.36248 -31.72101 -29.80428 -28.75731 -26.44953 -25.34706 -24.62444 -23.38775 -21.01171 -20.12652 -18.34211 -16.62020 -15.99024 -15.64228 -15.42564 -15.18144 -15.11161 -14.21307 -14.02228 -13.59574 -13.05313 -12.73574 -12.65759 -12.50096 -12.14551 -12.02847 -11.57447 -11.52137 -11.36173 -11.13807 -10.76714 -10.58996 -10.48574 -10.27899 -10.00776 -9.64180 -9.41424 -9.24787 -8.92559 -8.56629 -8.06694 -7.16879 -6.05850 -4.02946 3.25220 3.34418 3.37092 4.00220 4.39401 4.79333 5.07433 5.16066 5.21550 5.27615 5.34275 5.41078 5.46919 5.68503 5.72536 5.81090 5.87560 6.03966 6.08165 6.18813 6.24705 6.28395 6.31119 6.37925 6.46904 6.59437 6.65445 6.75438 6.87000 6.97509 7.27011 7.43559 7.63592 7.72448 8.05887 8.09521 8.20878 8.71095 9.03562 9.57245 11.07259 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.027263 B = 0.008388 C = 0.007593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.797746 B = 3337.398056 C = 3686.939985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.382 6.382 3 C 0.086 3.914 4 H 0.052 0.948 5 C -0.137 4.137 6 C 0.069 3.931 7 N -0.509 5.509 8 C 0.178 3.822 9 H 0.039 0.961 10 C -0.185 4.185 11 C -0.498 4.498 12 H 0.083 0.917 13 C 0.069 3.931 14 N -0.900 5.900 15 Si 0.885 3.115 16 H -0.281 1.281 17 H -0.298 1.298 18 H -0.272 1.272 19 C 0.088 3.912 20 H 0.041 0.959 21 C 0.068 3.932 22 N -0.842 5.842 23 C -0.095 4.095 24 H 0.035 0.965 25 H 0.038 0.962 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.030 0.970 31 H 0.056 0.944 32 H 0.041 0.959 33 H 0.028 0.972 34 H 0.263 0.737 35 H 0.060 0.940 36 H 0.026 0.974 37 H 0.325 0.675 38 H 0.361 0.639 39 H 0.057 0.943 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.724 -0.597 11.812 14.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.301 6.301 3 C 0.028 3.972 4 H 0.070 0.930 5 C -0.175 4.175 6 C -0.059 4.059 7 N -0.233 5.233 8 C 0.070 3.930 9 H 0.056 0.944 10 C -0.244 4.244 11 C -0.537 4.537 12 H 0.101 0.899 13 C -0.132 4.132 14 N -0.539 5.539 15 Si 0.717 3.283 16 H -0.209 1.209 17 H -0.226 1.226 18 H -0.197 1.197 19 C -0.021 4.021 20 H 0.058 0.942 21 C -0.064 4.064 22 N -0.372 5.372 23 C -0.132 4.132 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.044 0.956 37 H 0.136 0.864 38 H 0.177 0.823 39 H 0.076 0.924 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.011 -0.013 11.997 15.005 hybrid contribution 0.775 -2.203 -0.426 2.374 sum -8.236 -2.216 11.571 14.375 Atomic orbital electron populations 1.22701 0.82202 1.02086 0.99437 1.87955 1.18623 1.28492 1.95036 1.22303 0.94851 0.83743 0.96284 0.93015 1.22089 0.99062 1.00911 0.95404 1.21843 0.88651 0.97066 0.98388 1.62067 1.07876 1.53423 0.99975 1.19814 0.90533 0.87682 0.94942 0.94376 1.22799 1.01508 1.01057 0.99012 1.20972 1.22628 1.10578 0.99493 0.89929 1.24917 0.96494 0.96933 0.94868 1.69883 1.34236 1.39978 1.09760 0.86907 0.78291 0.84408 0.78731 1.20871 1.22555 1.19698 1.21505 0.93868 0.96269 0.90499 0.94170 1.21799 0.95273 0.90694 0.98634 1.58698 1.31524 1.27976 1.19051 1.21605 0.92291 1.02214 0.97129 0.94630 0.94345 0.90265 0.92572 0.90445 0.89694 0.95145 0.92539 0.94058 0.95343 0.92728 0.92107 0.95597 0.86421 0.82297 0.92436 0.88843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.82 101.05 1.09 1.47 16 2 O -0.38 -5.84 9.22 -35.23 -0.32 -6.16 16 3 C 0.09 1.26 2.93 -26.61 -0.08 1.18 16 4 H 0.05 0.66 7.79 -51.93 -0.40 0.25 16 5 C -0.14 -2.17 5.79 -26.65 -0.15 -2.33 16 6 C 0.07 1.33 4.44 -3.83 -0.02 1.32 16 7 N -0.51 -10.26 3.73 -220.14 -0.82 -11.08 16 8 C 0.18 4.11 1.23 -68.87 -0.09 4.03 16 9 H 0.04 0.91 4.49 -51.93 -0.23 0.68 16 10 C -0.19 -4.15 7.97 37.16 0.30 -3.86 16 11 C -0.50 -13.60 8.45 -34.44 -0.29 -13.89 16 12 H 0.08 2.47 7.29 -52.49 -0.38 2.08 16 13 C 0.07 1.96 5.45 -17.81 -0.10 1.87 16 14 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 15 Si 0.89 22.01 24.39 -169.99 -4.15 17.86 16 16 H -0.28 -6.93 6.86 56.52 0.39 -6.55 16 17 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 18 H -0.27 -6.49 6.53 56.52 0.37 -6.12 16 19 C 0.09 1.56 1.72 -67.72 -0.12 1.44 16 20 H 0.04 0.77 6.48 -51.93 -0.34 0.44 16 21 C 0.07 1.12 5.77 -3.83 -0.02 1.10 16 22 N -0.84 -13.56 9.02 -10.37 -0.09 -13.65 16 23 C -0.09 -1.46 5.00 -26.65 -0.13 -1.59 16 24 H 0.04 0.35 8.09 -51.93 -0.42 -0.07 16 25 H 0.04 0.41 7.86 -51.93 -0.41 0.01 16 26 H 0.08 0.80 8.14 -51.92 -0.42 0.37 16 27 H 0.06 0.81 7.86 -51.93 -0.41 0.40 16 28 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.08 1.85 6.62 -51.93 -0.34 1.51 16 30 H 0.03 0.62 6.18 -51.93 -0.32 0.30 16 31 H 0.06 1.26 6.42 -51.93 -0.33 0.93 16 32 H 0.04 0.97 3.29 -51.93 -0.17 0.79 16 33 H 0.03 0.58 6.81 -51.93 -0.35 0.22 16 34 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 36 H 0.03 0.47 6.48 -51.93 -0.34 0.14 16 37 H 0.33 4.48 9.08 -39.29 -0.36 4.12 16 38 H 0.36 6.72 7.59 -39.29 -0.30 6.42 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 1.49 7.76 -51.93 -0.40 1.09 16 LS Contribution 291.37 15.07 4.39 4.39 Total: -1.00 -29.29 291.37 -6.21 -35.50 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -6.38 Total: 8.83 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 0.39 Total: -9.27 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: -0.14 Total: -51.15 kcal Atomic # 8 Polarization: -5.84 SS G_CDS: -0.32 Total: -6.16 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.15 Total: 17.86 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.29 -6.21 -35.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226419860.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.248 kcal (2) G-P(sol) polarization free energy of solvation -29.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds