Wall clock time and date at job start Mon Mar 30 2020 05:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99488 * 2 1 4 4 H 1.09000 * 109.52762 * 29.87351 * 3 2 1 5 5 C 1.53117 * 109.57417 * 269.71360 * 3 2 1 6 6 C 1.53042 * 109.27957 * 297.71929 * 5 3 2 7 7 N 1.46844 * 109.52271 * 300.82105 * 6 5 3 8 8 C 1.46903 * 111.00123 * 185.83596 * 7 6 5 9 9 H 1.09002 * 109.46938 * 184.75648 * 8 7 6 10 10 C 1.52995 * 109.47091 * 304.75642 * 8 7 6 11 11 C 1.50696 * 109.46684 * 64.75717 * 8 7 6 12 12 H 1.07998 * 120.00691 * 359.97438 * 11 8 7 13 13 C 1.37882 * 119.99508 * 179.72694 * 11 8 7 14 14 N 1.31523 * 119.99681 * 180.02562 * 13 11 8 15 15 Si 1.86799 * 120.00285 * 359.97438 * 13 11 8 16 16 H 1.48496 * 109.46924 * 90.00094 * 15 13 11 17 17 H 1.48504 * 109.47065 * 210.00420 * 15 13 11 18 18 H 1.48498 * 109.46823 * 329.99822 * 15 13 11 19 19 C 1.46857 * 111.19776 * 61.74286 * 7 6 5 20 20 H 1.08997 * 109.46305 * 58.27070 * 19 7 6 21 21 C 1.52997 * 109.45995 * 178.24184 * 19 7 6 22 22 N 1.46899 * 109.47466 * 54.33886 * 21 19 7 23 23 C 1.53039 * 109.51942 * 298.25649 * 19 7 6 24 24 H 1.08999 * 109.47487 * 300.00038 * 1 2 3 25 25 H 1.09000 * 109.47109 * 60.00244 * 1 2 3 26 26 H 1.09008 * 109.46901 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.50522 * 57.65937 * 5 3 2 28 28 H 1.09006 * 109.50407 * 177.74333 * 5 3 2 29 29 H 1.08997 * 109.46387 * 180.80549 * 6 5 3 30 30 H 1.08999 * 109.46331 * 60.83693 * 6 5 3 31 31 H 1.08999 * 109.46912 * 59.14297 * 10 8 7 32 32 H 1.08998 * 109.46996 * 179.14580 * 10 8 7 33 33 H 1.09005 * 109.47387 * 299.14409 * 10 8 7 34 34 H 0.96994 * 119.99744 * 180.02562 * 14 13 11 35 35 H 1.09009 * 109.47100 * 174.33223 * 21 19 7 36 36 H 1.08997 * 109.47523 * 294.33309 * 21 19 7 37 37 H 1.00906 * 111.00124 * 173.70511 * 22 21 19 38 38 H 1.00902 * 110.99714 * 297.65168 * 22 21 19 39 39 H 1.08999 * 109.50043 * 179.12481 * 23 19 7 40 40 H 1.09000 * 109.50195 * 299.23351 * 23 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3444 2.0006 0.5117 5 6 2.2253 1.7712 -1.4427 6 6 3.2082 0.8261 -2.1375 7 7 4.4836 0.8229 -1.4098 8 6 5.4958 0.0342 -2.1250 9 1 6.4037 -0.0219 -1.5244 10 6 4.9606 -1.3774 -2.3734 11 6 5.8061 0.6933 -3.4442 12 1 5.3015 1.6063 -3.7237 13 6 6.7379 0.1332 -4.2923 14 7 7.0091 0.7086 -5.4435 15 14 7.6162 -1.4420 -3.8057 16 1 6.8393 -2.6115 -4.2893 17 1 8.9708 -1.4616 -4.4139 18 1 7.7367 -1.5049 -2.3269 19 6 4.3099 0.3342 -0.0359 20 1 3.8914 -0.6720 -0.0585 21 6 5.6668 0.3059 0.6704 22 7 6.2927 1.6320 0.5819 23 6 3.3600 1.2647 0.7216 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 1.2737 1.7615 -1.9740 28 1 2.6313 2.7829 -1.4418 29 1 3.3746 1.1632 -3.1606 30 1 2.7948 -0.1824 -2.1503 31 1 4.0444 -1.3203 -2.9611 32 1 5.7056 -1.9579 -2.9174 33 1 4.7504 -1.8596 -1.4187 34 1 7.6643 0.3145 -6.0402 35 1 5.5256 0.0401 1.7181 36 1 6.3103 -0.4323 0.1919 37 1 7.1410 1.6686 1.1271 38 1 6.4692 1.8851 -0.3788 39 1 3.2190 0.8931 1.7365 40 1 3.7845 2.2680 0.7566 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226419860.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:40 Heat of formation + Delta-G solvation = -55.457410 kcal Electronic energy + Delta-G solvation = -19403.570351 eV Core-core repulsion = 16638.632800 eV Total energy + Delta-G solvation = -2764.937550 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.04 seconds Orbital eigenvalues (eV) -40.88648 -38.47652 -35.71290 -34.81736 -33.60611 -31.15271 -30.39050 -27.47054 -27.22037 -26.07636 -24.88811 -22.55922 -21.59373 -19.80536 -18.64951 -17.32012 -17.06586 -16.80179 -16.67079 -16.35470 -15.71168 -15.43095 -15.15460 -14.80663 -14.24199 -14.08237 -13.98778 -13.80024 -13.51541 -13.09071 -12.92894 -12.80099 -12.55702 -12.43772 -12.18486 -11.86340 -11.80718 -11.59358 -11.45241 -10.99589 -10.92679 -10.74008 -10.32589 -9.38238 -8.80068 -8.26601 -6.27135 1.26991 1.30900 1.40794 2.30171 2.96426 3.07431 3.27543 3.84083 3.92305 3.97891 4.15219 4.34664 4.39612 4.48136 4.50928 4.55567 4.58324 4.62232 4.66967 4.72580 4.76036 4.82936 4.88454 4.96240 5.05428 5.08625 5.14358 5.27351 5.31268 5.44109 5.54264 5.67548 6.12778 6.35692 6.40896 6.52768 6.78027 6.79670 6.83496 7.37017 8.90189 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.027263 B = 0.008388 C = 0.007593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.797746 B = 3337.398056 C = 3686.939985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.090 3.910 4 H 0.081 0.919 5 C -0.131 4.131 6 C 0.073 3.927 7 N -0.514 5.514 8 C 0.185 3.815 9 H 0.039 0.961 10 C -0.179 4.179 11 C -0.493 4.493 12 H 0.042 0.958 13 C 0.014 3.986 14 N -0.948 5.948 15 Si 0.945 3.055 16 H -0.276 1.276 17 H -0.298 1.298 18 H -0.253 1.253 19 C 0.087 3.913 20 H 0.030 0.970 21 C 0.069 3.931 22 N -0.838 5.838 23 C -0.089 4.089 24 H 0.055 0.945 25 H 0.041 0.959 26 H 0.089 0.911 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.048 0.952 30 H 0.022 0.978 31 H 0.048 0.952 32 H 0.033 0.967 33 H 0.050 0.950 34 H 0.264 0.736 35 H 0.088 0.912 36 H 0.009 0.991 37 H 0.340 0.660 38 H 0.346 0.654 39 H 0.076 0.924 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.579 -1.415 14.434 17.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.325 6.325 3 C 0.032 3.968 4 H 0.099 0.901 5 C -0.169 4.169 6 C -0.055 4.055 7 N -0.238 5.238 8 C 0.077 3.923 9 H 0.057 0.943 10 C -0.238 4.238 11 C -0.532 4.532 12 H 0.060 0.940 13 C -0.182 4.182 14 N -0.589 5.589 15 Si 0.773 3.227 16 H -0.202 1.202 17 H -0.226 1.226 18 H -0.177 1.177 19 C -0.022 4.022 20 H 0.048 0.952 21 C -0.063 4.063 22 N -0.369 5.369 23 C -0.127 4.127 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.108 0.892 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.040 0.960 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.027 0.973 37 H 0.152 0.848 38 H 0.159 0.841 39 H 0.095 0.905 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.884 -0.830 14.662 17.702 hybrid contribution 0.951 -1.878 -1.239 2.443 sum -8.933 -2.709 13.423 16.349 Atomic orbital electron populations 1.22908 0.80283 1.03253 1.00568 1.87923 1.20806 1.28650 1.95101 1.22251 0.95175 0.84388 0.94942 0.90148 1.22041 0.98492 0.99666 0.96661 1.21739 0.89271 0.97437 0.97092 1.62008 1.07564 1.53054 1.01154 1.19579 0.91694 0.88082 0.92974 0.94337 1.22691 1.00808 1.00395 0.99920 1.21176 1.21502 1.09172 1.01314 0.93983 1.25674 0.97535 1.00277 0.94763 1.70029 1.35552 1.42032 1.11252 0.85925 0.76913 0.80435 0.79422 1.20234 1.22591 1.17717 1.21604 0.95283 0.96274 0.88990 0.95221 1.21823 0.94268 0.90331 0.99836 1.58675 1.32482 1.27654 1.18040 1.21562 0.92036 1.01295 0.97763 0.92644 0.93989 0.89233 0.91095 0.90686 0.93384 0.95994 0.93270 0.94877 0.93100 0.92721 0.89417 0.97294 0.84792 0.84050 0.90506 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.82 113.37 1.23 1.74 16 2 O -0.41 -11.23 9.22 -148.98 -1.37 -12.60 16 3 C 0.09 2.37 2.93 30.67 0.09 2.46 16 4 H 0.08 1.71 7.79 -2.39 -0.02 1.69 16 5 C -0.13 -3.99 5.79 30.65 0.18 -3.81 16 6 C 0.07 2.86 4.44 86.33 0.38 3.24 16 7 N -0.51 -20.55 3.73 -850.39 -3.17 -23.72 16 8 C 0.19 8.53 1.23 44.17 0.05 8.59 16 9 H 0.04 1.80 4.49 -2.39 -0.01 1.79 16 10 C -0.18 -7.88 7.97 71.98 0.57 -7.31 16 11 C -0.49 -27.74 8.45 25.60 0.22 -27.52 16 12 H 0.04 2.65 7.29 -2.91 -0.02 2.63 16 13 C 0.01 0.84 5.45 84.65 0.46 1.30 16 14 N -0.95 -59.14 13.96 21.45 0.30 -58.84 16 15 Si 0.94 45.46 24.39 68.60 1.67 47.13 16 16 H -0.28 -12.94 6.86 99.48 0.68 -12.25 16 17 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 18 H -0.25 -11.31 6.53 99.48 0.65 -10.66 16 19 C 0.09 2.92 1.72 44.94 0.08 3.00 16 20 H 0.03 1.08 6.48 -2.39 -0.02 1.06 16 21 C 0.07 2.12 5.77 86.30 0.50 2.62 16 22 N -0.84 -25.45 9.02 -186.72 -1.68 -27.14 16 23 C -0.09 -2.48 5.00 30.65 0.15 -2.32 16 24 H 0.06 0.87 8.09 -2.39 -0.02 0.85 16 25 H 0.04 0.79 7.86 -2.39 -0.02 0.77 16 26 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 27 H 0.07 1.94 7.86 -2.39 -0.02 1.92 16 28 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 29 H 0.05 2.20 6.62 -2.39 -0.02 2.19 16 30 H 0.02 0.89 6.18 -2.39 -0.01 0.88 16 31 H 0.05 2.19 6.42 -2.39 -0.02 2.18 16 32 H 0.03 1.49 3.29 -2.39 -0.01 1.49 16 33 H 0.05 1.98 6.81 -2.38 -0.02 1.97 16 34 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 35 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 36 H 0.01 0.31 6.48 -2.39 -0.02 0.29 16 37 H 0.34 8.61 9.08 -89.69 -0.81 7.80 16 38 H 0.35 12.60 7.59 -89.69 -0.68 11.92 16 39 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.09 2.59 7.76 -2.39 -0.02 2.57 16 Total: -1.00 -64.14 291.37 -0.87 -65.01 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: -0.53 Total: 28.17 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 3.91 Total: -18.01 kcal Atomic # 7 Polarization: -105.14 SS G_CDS: -4.55 Total: -109.70 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -1.37 Total: -12.60 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.67 Total: 47.13 kcal Total: -64.14 -0.87 -65.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226419860.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.550 kcal (2) G-P(sol) polarization free energy of solvation -64.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.05 seconds