Wall clock time and date at job start Mon Mar 30 2020 05:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47434 * 2 1 4 4 C 1.50703 * 109.47368 * 240.00293 * 2 1 3 5 5 H 1.07995 * 120.00407 * 240.00706 * 4 2 1 6 6 C 1.37882 * 119.99862 * 59.99573 * 4 2 1 7 7 N 1.31515 * 120.00001 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99975 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46949 * 90.00175 * 8 6 4 10 10 H 1.48500 * 109.47020 * 210.00394 * 8 6 4 11 11 H 1.48507 * 109.47134 * 330.00511 * 8 6 4 12 12 N 1.46900 * 109.47223 * 120.00236 * 2 1 3 13 13 C 1.48528 * 110.99964 * 178.09366 * 12 2 1 14 14 C 1.54937 * 103.22546 * 159.72239 * 13 12 2 15 15 H 1.09004 * 110.87659 * 81.01433 * 14 13 12 16 16 O 1.42899 * 110.72310 * 204.22457 * 14 13 12 17 17 C 1.54595 * 102.92171 * 322.58391 * 14 13 12 18 18 C 1.47894 * 110.99974 * 295.48953 * 12 2 1 19 19 H 1.08998 * 109.91874 * 333.51044 * 18 12 2 20 20 C 1.53007 * 109.91925 * 94.60436 * 18 12 2 21 21 N 1.46895 * 109.47099 * 185.46116 * 20 18 12 22 22 C 1.46901 * 111.00262 * 75.51135 * 21 20 18 23 23 C 1.46898 * 110.99970 * 199.46185 * 21 20 18 24 24 H 1.09003 * 109.47040 * 66.55856 * 1 2 3 25 25 H 1.08995 * 109.46940 * 186.55617 * 1 2 3 26 26 H 1.08998 * 109.46981 * 306.56018 * 1 2 3 27 27 H 0.97003 * 120.00077 * 179.97438 * 7 6 4 28 28 H 1.09007 * 110.66808 * 278.15585 * 13 12 2 29 29 H 1.09000 * 110.67341 * 41.28482 * 13 12 2 30 30 H 0.96702 * 114.00396 * 293.50204 * 16 14 13 31 31 H 1.09000 * 110.30756 * 263.03942 * 17 14 13 32 32 H 1.08997 * 110.30598 * 140.87494 * 17 14 13 33 33 H 1.09000 * 109.46706 * 305.46353 * 20 18 12 34 34 H 1.09000 * 109.47044 * 65.45795 * 20 18 12 35 35 H 1.08998 * 109.47062 * 62.89783 * 22 21 20 36 36 H 1.09000 * 109.47181 * 182.90005 * 22 21 20 37 37 H 1.08997 * 109.46757 * 302.90024 * 22 21 20 38 38 H 1.08998 * 109.47104 * 59.99880 * 23 21 20 39 39 H 1.08997 * 109.47579 * 179.97438 * 23 21 20 40 40 H 1.09002 * 109.47136 * 300.00513 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.3428 -2.1615 -4.4120 10 1 2.4866 -0.1411 -5.1123 11 1 3.6294 -1.7582 -3.7123 12 7 2.0197 -0.6925 1.1994 13 6 3.5037 -0.7524 1.2108 14 6 3.8368 -1.0039 2.7029 15 1 3.7263 -2.0591 2.9531 16 8 5.1561 -0.5488 3.0102 17 6 2.7786 -0.1528 3.4416 18 6 1.6362 0.0379 2.4269 19 1 1.5101 1.0974 2.2044 20 6 0.3334 -0.5350 2.9888 21 7 -0.1074 0.2786 4.1296 22 6 -0.6879 1.5498 3.6767 23 6 -1.0564 -0.4636 4.9701 24 1 -0.3633 0.4088 -0.9429 25 1 -0.3633 -1.0209 0.1173 26 1 -0.3633 0.6121 0.8254 27 1 0.7094 1.1619 -3.4844 28 1 3.8603 -1.5765 0.5928 29 1 3.9296 0.1933 0.8757 30 1 5.8572 -1.0500 2.5715 31 1 3.1992 0.8125 3.7236 32 1 2.4170 -0.6810 4.3238 33 1 -0.4335 -0.5208 2.2144 34 1 0.4995 -1.5611 3.3169 35 1 -1.5779 1.3505 3.0798 36 1 -0.9587 2.1544 4.5422 37 1 0.0422 2.0875 3.0719 38 1 -0.5772 -1.3662 5.3491 39 1 -1.3662 0.1617 5.8075 40 1 -1.9295 -0.7371 4.3778 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227970714.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:31 Heat of formation + Delta-G solvation = -34.700449 kcal Electronic energy + Delta-G solvation = -18877.960273 eV Core-core repulsion = 16113.922812 eV Total energy + Delta-G solvation = -2764.037461 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -39.12872 -36.85372 -35.62512 -33.34341 -30.80598 -29.59609 -27.39552 -27.21418 -25.31039 -25.00055 -22.14380 -20.77637 -20.05806 -18.97574 -17.20399 -16.19405 -15.53988 -15.15879 -15.00149 -14.60208 -14.06899 -13.78799 -13.46665 -12.93930 -12.83217 -12.32353 -12.23150 -12.20035 -11.61430 -11.56264 -11.49344 -11.08029 -10.96491 -10.81618 -10.69901 -10.58929 -10.29248 -10.11934 -9.92447 -9.84641 -9.35783 -8.90694 -8.45924 -8.05938 -7.34581 -6.03539 -4.09036 3.28626 3.35127 3.37915 4.08357 4.39905 4.53650 5.09642 5.24555 5.26634 5.29373 5.38226 5.47552 5.54655 5.58606 5.72695 5.78584 5.92648 5.98435 6.05447 6.18125 6.21522 6.35840 6.43771 6.51606 6.60109 6.74046 6.77522 7.00083 7.03791 7.26514 7.28521 7.44969 7.61468 7.79489 7.94239 8.11904 8.29634 8.52360 8.97337 9.56327 11.02705 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.021512 B = 0.007885 C = 0.006169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.299057 B = 3550.097846 C = 4537.517654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.207 3.793 3 H 0.000 1.000 4 C -0.503 4.503 5 H 0.061 0.939 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.507 5.507 13 C 0.028 3.972 14 C 0.088 3.912 15 H 0.063 0.937 16 O -0.569 6.569 17 C -0.103 4.103 18 C 0.075 3.925 19 H 0.047 0.953 20 C 0.063 3.937 21 N -0.549 5.549 22 C 0.024 3.976 23 C 0.028 3.972 24 H 0.086 0.914 25 H 0.032 0.968 26 H 0.009 0.991 27 H 0.260 0.740 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.374 0.626 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.025 0.975 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.035 -2.056 11.315 11.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.101 3.899 3 H 0.017 0.983 4 C -0.542 4.542 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.233 5.233 13 C -0.101 4.101 14 C 0.029 3.971 15 H 0.081 0.919 16 O -0.374 6.374 17 C -0.141 4.141 18 C -0.034 4.034 19 H 0.065 0.935 20 C -0.065 4.065 21 N -0.273 5.273 22 C -0.124 4.124 23 C -0.121 4.121 24 H 0.105 0.895 25 H 0.051 0.949 26 H 0.027 0.973 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.065 0.935 30 H 0.221 0.779 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.043 0.957 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -0.277 -1.912 11.798 11.955 hybrid contribution 0.104 -0.147 -1.841 1.850 sum -0.173 -2.059 9.957 10.169 Atomic orbital electron populations 1.21899 0.97765 0.98450 1.00907 1.19406 0.92426 0.91995 0.86097 0.98252 1.21130 1.31008 1.12287 0.89776 0.92051 1.24937 0.95220 0.95059 0.99040 1.69886 1.36925 1.22959 1.23434 0.86520 0.79210 0.79295 0.82502 1.20680 1.21316 1.19945 1.64636 1.07452 1.49070 1.02187 1.23554 0.90527 1.01287 0.94741 1.22938 0.81997 0.97090 0.95067 0.91891 1.86474 1.15861 1.61904 1.73130 1.22256 0.93716 1.00160 0.97973 1.22161 0.93640 0.96612 0.90999 0.93508 1.22310 0.96889 0.96141 0.91135 1.61894 1.38830 1.05295 1.21293 1.22398 0.98344 0.91953 0.99725 1.22335 0.94316 0.98503 0.96922 0.89504 0.94900 0.97251 0.92963 0.90402 0.93478 0.77949 0.91357 0.90728 0.92702 0.91033 0.95654 0.91975 0.91198 0.91624 0.91878 0.95916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 7.72 37.16 0.29 -2.91 16 2 C 0.21 5.20 1.76 -68.86 -0.12 5.08 16 3 H 0.00 0.00 7.97 -51.93 -0.41 -0.42 16 4 C -0.50 -13.68 8.07 -34.44 -0.28 -13.96 16 5 H 0.06 1.66 6.84 -52.49 -0.36 1.30 16 6 C 0.06 1.61 5.28 -17.82 -0.09 1.51 16 7 N -0.89 -25.35 11.29 55.43 0.63 -24.72 16 8 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 12 N -0.51 -10.84 4.76 -216.05 -1.03 -11.87 16 13 C 0.03 0.54 5.43 -1.90 -0.01 0.53 16 14 C 0.09 1.46 4.44 -24.87 -0.11 1.35 16 15 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 16 O -0.57 -8.78 13.40 -35.23 -0.47 -9.26 16 17 C -0.10 -1.73 6.17 -25.38 -0.16 -1.89 16 18 C 0.08 1.40 2.06 -66.65 -0.14 1.27 16 19 H 0.05 0.96 6.22 -51.93 -0.32 0.63 16 20 C 0.06 1.06 4.14 -3.82 -0.02 1.04 16 21 N -0.55 -8.03 4.74 -251.26 -1.19 -9.22 16 22 C 0.02 0.34 9.41 60.07 0.57 0.90 16 23 C 0.03 0.33 9.51 60.06 0.57 0.90 16 24 H 0.09 2.32 5.92 -51.93 -0.31 2.02 16 25 H 0.03 0.77 7.93 -51.93 -0.41 0.36 16 26 H 0.01 0.19 6.22 -51.93 -0.32 -0.13 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 28 H 0.08 1.53 7.34 -51.93 -0.38 1.15 16 29 H 0.05 1.01 8.02 -51.93 -0.42 0.59 16 30 H 0.37 4.12 9.12 45.56 0.42 4.54 16 31 H 0.07 1.18 8.07 -51.93 -0.42 0.77 16 32 H 0.07 1.17 7.66 -51.93 -0.40 0.78 16 33 H 0.05 1.02 5.03 -51.93 -0.26 0.76 16 34 H 0.07 1.17 7.88 -51.93 -0.41 0.76 16 35 H 0.02 0.36 8.13 -51.93 -0.42 -0.07 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 1.07 6.70 -51.93 -0.35 0.72 16 38 H 0.06 0.73 8.07 -51.93 -0.42 0.31 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 307.06 15.07 4.63 4.63 Total: -1.00 -29.26 307.06 -7.98 -37.24 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -6.02 Total: 3.17 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 0.50 Total: -6.16 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: -1.59 Total: -45.81 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.47 Total: -9.26 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.26 -7.98 -37.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227970714.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.540 kcal (2) G-P(sol) polarization free energy of solvation -29.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds