Wall clock time and date at job start Mon Mar 30 2020 05:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47434 * 2 1 4 4 C 1.50703 * 109.47368 * 240.00293 * 2 1 3 5 5 H 1.07995 * 120.00407 * 240.00706 * 4 2 1 6 6 C 1.37882 * 119.99862 * 59.99573 * 4 2 1 7 7 N 1.31515 * 120.00001 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99975 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46949 * 90.00175 * 8 6 4 10 10 H 1.48500 * 109.47020 * 210.00394 * 8 6 4 11 11 H 1.48507 * 109.47134 * 330.00511 * 8 6 4 12 12 N 1.46900 * 109.47223 * 120.00236 * 2 1 3 13 13 C 1.48528 * 110.99964 * 178.09366 * 12 2 1 14 14 C 1.54937 * 103.22546 * 159.72239 * 13 12 2 15 15 H 1.09004 * 110.87659 * 81.01433 * 14 13 12 16 16 O 1.42899 * 110.72310 * 204.22457 * 14 13 12 17 17 C 1.54595 * 102.92171 * 322.58391 * 14 13 12 18 18 C 1.47894 * 110.99974 * 295.48953 * 12 2 1 19 19 H 1.08998 * 109.91874 * 333.51044 * 18 12 2 20 20 C 1.53007 * 109.91925 * 94.60436 * 18 12 2 21 21 N 1.46895 * 109.47099 * 185.46116 * 20 18 12 22 22 C 1.46901 * 111.00262 * 75.51135 * 21 20 18 23 23 C 1.46898 * 110.99970 * 199.46185 * 21 20 18 24 24 H 1.09003 * 109.47040 * 66.55856 * 1 2 3 25 25 H 1.08995 * 109.46940 * 186.55617 * 1 2 3 26 26 H 1.08998 * 109.46981 * 306.56018 * 1 2 3 27 27 H 0.97003 * 120.00077 * 179.97438 * 7 6 4 28 28 H 1.09007 * 110.66808 * 278.15585 * 13 12 2 29 29 H 1.09000 * 110.67341 * 41.28482 * 13 12 2 30 30 H 0.96702 * 114.00396 * 293.50204 * 16 14 13 31 31 H 1.09000 * 110.30756 * 263.03942 * 17 14 13 32 32 H 1.08997 * 110.30598 * 140.87494 * 17 14 13 33 33 H 1.09000 * 109.46706 * 305.46353 * 20 18 12 34 34 H 1.09000 * 109.47044 * 65.45795 * 20 18 12 35 35 H 1.08998 * 109.47062 * 62.89783 * 22 21 20 36 36 H 1.09000 * 109.47181 * 182.90005 * 22 21 20 37 37 H 1.08997 * 109.46757 * 302.90024 * 22 21 20 38 38 H 1.08998 * 109.47104 * 59.99880 * 23 21 20 39 39 H 1.08997 * 109.47579 * 179.97438 * 23 21 20 40 40 H 1.09002 * 109.47136 * 300.00513 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.3428 -2.1615 -4.4120 10 1 2.4866 -0.1411 -5.1123 11 1 3.6294 -1.7582 -3.7123 12 7 2.0197 -0.6925 1.1994 13 6 3.5037 -0.7524 1.2108 14 6 3.8368 -1.0039 2.7029 15 1 3.7263 -2.0591 2.9531 16 8 5.1561 -0.5488 3.0102 17 6 2.7786 -0.1528 3.4416 18 6 1.6362 0.0379 2.4269 19 1 1.5101 1.0974 2.2044 20 6 0.3334 -0.5350 2.9888 21 7 -0.1074 0.2786 4.1296 22 6 -0.6879 1.5498 3.6767 23 6 -1.0564 -0.4636 4.9701 24 1 -0.3633 0.4088 -0.9429 25 1 -0.3633 -1.0209 0.1173 26 1 -0.3633 0.6121 0.8254 27 1 0.7094 1.1619 -3.4844 28 1 3.8603 -1.5765 0.5928 29 1 3.9296 0.1933 0.8757 30 1 5.8572 -1.0500 2.5715 31 1 3.1992 0.8125 3.7236 32 1 2.4170 -0.6810 4.3238 33 1 -0.4335 -0.5208 2.2144 34 1 0.4995 -1.5611 3.3169 35 1 -1.5779 1.3505 3.0798 36 1 -0.9587 2.1544 4.5422 37 1 0.0422 2.0875 3.0719 38 1 -0.5772 -1.3662 5.3491 39 1 -1.3662 0.1617 5.8075 40 1 -1.9295 -0.7371 4.3778 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227970714.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:31 Heat of formation + Delta-G solvation = -58.032870 kcal Electronic energy + Delta-G solvation = -18878.972043 eV Core-core repulsion = 16113.922812 eV Total energy + Delta-G solvation = -2765.049231 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.64229 -38.06025 -37.12530 -35.19497 -32.65242 -31.06330 -28.88334 -28.45577 -27.20351 -26.54786 -23.57920 -22.22105 -21.75035 -20.53682 -18.63330 -18.14540 -17.18171 -16.47652 -16.40964 -16.11858 -15.54927 -15.20694 -15.00297 -14.47548 -14.33067 -13.98327 -13.87132 -13.42738 -13.16696 -12.95469 -12.77761 -12.64621 -12.57155 -12.53433 -12.37595 -12.12962 -12.01979 -11.91490 -11.65839 -11.39528 -10.91076 -10.76204 -10.53086 -9.30720 -9.10373 -8.13723 -6.27026 1.41007 1.41492 1.51742 2.39674 2.81380 3.14271 3.31276 3.62205 3.82989 3.92153 4.05777 4.24634 4.32739 4.46321 4.51281 4.58083 4.66135 4.71845 4.77661 4.85201 4.91251 4.94272 4.97565 5.03372 5.04094 5.05573 5.09987 5.19425 5.30474 5.43335 5.68069 5.71714 6.06754 6.13766 6.19841 6.30356 6.60032 6.86615 6.91615 7.42637 8.91863 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.021512 B = 0.007885 C = 0.006169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.299057 B = 3550.097846 C = 4537.517654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.215 3.785 3 H -0.043 1.043 4 C -0.520 4.520 5 H 0.060 0.940 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.962 3.038 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.267 1.267 12 N -0.510 5.510 13 C 0.025 3.975 14 C 0.105 3.895 15 H 0.087 0.913 16 O -0.576 6.576 17 C -0.096 4.096 18 C 0.076 3.924 19 H 0.021 0.979 20 C 0.074 3.926 21 N -0.552 5.552 22 C 0.025 3.975 23 C 0.027 3.973 24 H 0.059 0.941 25 H 0.033 0.967 26 H 0.023 0.977 27 H 0.262 0.738 28 H 0.076 0.924 29 H 0.020 0.980 30 H 0.395 0.605 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.033 0.967 34 H 0.081 0.919 35 H 0.020 0.980 36 H 0.087 0.913 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.285 -3.447 12.679 13.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.107 3.893 3 H -0.026 1.026 4 C -0.558 4.558 5 H 0.078 0.922 6 C -0.189 4.189 7 N -0.561 5.561 8 Si 0.787 3.213 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.191 1.191 12 N -0.235 5.235 13 C -0.104 4.104 14 C 0.045 3.955 15 H 0.104 0.896 16 O -0.383 6.383 17 C -0.134 4.134 18 C -0.033 4.033 19 H 0.039 0.961 20 C -0.054 4.054 21 N -0.276 5.276 22 C -0.123 4.123 23 C -0.121 4.121 24 H 0.078 0.922 25 H 0.053 0.947 26 H 0.042 0.958 27 H 0.071 0.929 28 H 0.094 0.906 29 H 0.038 0.962 30 H 0.244 0.756 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.051 0.949 34 H 0.100 0.900 35 H 0.039 0.961 36 H 0.106 0.894 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 0.058 -3.317 13.181 13.592 hybrid contribution 0.024 0.332 -2.218 2.243 sum 0.082 -2.984 10.963 11.362 Atomic orbital electron populations 1.21668 0.97207 0.98447 0.99972 1.19165 0.92788 0.89787 0.87531 1.02592 1.21407 1.31168 1.12352 0.90872 0.92210 1.25748 0.95343 0.95729 1.02036 1.70024 1.37788 1.24181 1.24093 0.85500 0.78938 0.78190 0.78671 1.20025 1.21061 1.19123 1.64584 1.08588 1.48510 1.01846 1.23600 0.89411 0.99803 0.97557 1.22762 0.82562 0.98137 0.91993 0.89559 1.86438 1.15904 1.62752 1.73241 1.22200 0.93016 1.00249 0.97907 1.22202 0.95718 0.94996 0.90431 0.96053 1.22107 0.95099 0.96839 0.91387 1.61897 1.40103 1.05357 1.20278 1.22399 0.97396 0.92011 1.00501 1.22436 0.93722 0.99097 0.96852 0.92236 0.94747 0.95763 0.92921 0.90571 0.96193 0.75571 0.92047 0.88736 0.94890 0.90018 0.96145 0.89414 0.93263 0.90491 0.89884 0.95996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.72 7.72 71.98 0.56 -5.16 16 2 C 0.21 11.16 1.76 44.17 0.08 11.24 16 3 H -0.04 -2.58 7.97 -2.39 -0.02 -2.60 16 4 C -0.52 -28.79 8.07 25.60 0.21 -28.58 16 5 H 0.06 3.26 6.84 -2.91 -0.02 3.24 16 6 C 0.01 0.55 5.28 84.66 0.45 1.00 16 7 N -0.92 -53.61 11.29 21.45 0.24 -53.37 16 8 Si 0.96 43.71 29.54 68.60 2.03 45.73 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 12 N -0.51 -22.01 4.76 -837.45 -3.99 -26.00 16 13 C 0.03 0.99 5.43 86.65 0.47 1.46 16 14 C 0.10 3.26 4.44 31.80 0.14 3.40 16 15 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 16 O -0.58 -16.48 13.40 -148.98 -2.00 -18.47 16 17 C -0.10 -3.07 6.17 31.47 0.19 -2.87 16 18 C 0.08 2.82 2.06 45.06 0.09 2.91 16 19 H 0.02 0.91 6.22 -2.39 -0.01 0.89 16 20 C 0.07 2.41 4.14 86.31 0.36 2.76 16 21 N -0.55 -15.17 4.74 -948.86 -4.50 -19.67 16 22 C 0.03 0.69 9.41 127.69 1.20 1.89 16 23 C 0.03 0.56 9.51 127.69 1.21 1.78 16 24 H 0.06 3.29 5.92 -2.39 -0.01 3.28 16 25 H 0.03 1.65 7.93 -2.39 -0.02 1.63 16 26 H 0.02 1.08 6.22 -2.39 -0.01 1.07 16 27 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 28 H 0.08 2.98 7.34 -2.38 -0.02 2.96 16 29 H 0.02 0.88 8.02 -2.39 -0.02 0.86 16 30 H 0.39 7.70 9.12 -74.06 -0.68 7.02 16 31 H 0.06 2.06 8.07 -2.39 -0.02 2.04 16 32 H 0.09 2.68 7.66 -2.39 -0.02 2.66 16 33 H 0.03 1.22 5.03 -2.39 -0.01 1.20 16 34 H 0.08 2.49 7.88 -2.39 -0.02 2.47 16 35 H 0.02 0.56 8.13 -2.39 -0.02 0.54 16 36 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.05 1.52 6.70 -2.39 -0.02 1.51 16 38 H 0.08 1.46 8.07 -2.39 -0.02 1.44 16 39 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -63.53 307.06 -2.92 -66.45 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.34 Total: 15.51 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 4.96 Total: -10.18 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -8.24 Total: -99.04 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -2.00 Total: -18.47 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -63.53 -2.92 -66.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227970714.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.413 kcal (2) G-P(sol) polarization free energy of solvation -63.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds