Wall clock time and date at job start Mon Mar 30 2020 03:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.47150 * 2 1 4 4 O 1.42894 * 109.46851 * 180.02562 * 3 2 1 5 5 C 1.42902 * 113.99659 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47155 * 179.97438 * 5 4 3 7 7 N 1.46900 * 109.46843 * 62.00699 * 6 5 4 8 8 C 1.46906 * 110.99619 * 176.14630 * 7 6 5 9 9 C 1.53238 * 109.33748 * 172.74574 * 8 7 6 10 10 N 1.47076 * 108.52229 * 53.83003 * 9 8 7 11 11 C 1.36936 * 120.88462 * 128.78973 * 10 9 8 12 12 H 1.07995 * 120.00979 * 208.03714 * 11 10 9 13 13 C 1.38817 * 119.99548 * 28.03833 * 11 10 9 14 14 N 1.31624 * 120.00310 * 15.40984 * 13 11 10 15 15 Si 1.86798 * 119.99975 * 195.40796 * 13 11 10 16 16 H 1.48496 * 109.47490 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47421 * 120.00065 * 15 13 11 18 18 H 1.48507 * 109.47209 * 240.00103 * 15 13 11 19 19 C 1.47083 * 118.23804 * 308.81632 * 10 9 8 20 20 C 1.46896 * 111.00174 * 51.84855 * 7 6 5 21 21 H 1.09009 * 109.47339 * 299.99843 * 1 2 3 22 22 H 1.09004 * 109.47367 * 59.99877 * 1 2 3 23 23 H 1.08996 * 109.47595 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47456 * 240.00447 * 2 1 3 25 25 H 1.08999 * 109.47514 * 119.99666 * 2 1 3 26 26 H 1.09000 * 109.47047 * 59.99771 * 3 2 1 27 27 H 1.08999 * 109.46639 * 300.00201 * 3 2 1 28 28 H 1.09002 * 109.47691 * 59.99826 * 5 4 3 29 29 H 1.08996 * 109.47142 * 299.99499 * 5 4 3 30 30 H 1.09000 * 109.46959 * 302.00488 * 6 5 4 31 31 H 1.09006 * 109.47254 * 182.00650 * 6 5 4 32 32 H 1.09001 * 109.48933 * 52.78995 * 8 7 6 33 33 H 1.08992 * 109.49563 * 292.70322 * 8 7 6 34 34 H 1.08996 * 109.62977 * 173.53848 * 9 8 7 35 35 H 1.09002 * 109.63213 * 293.92544 * 9 8 7 36 36 H 0.96996 * 120.00061 * 179.97438 * 14 13 11 37 37 H 1.09000 * 109.62634 * 170.89305 * 19 10 9 38 38 H 1.09001 * 109.62726 * 291.46896 * 19 10 9 39 39 H 1.08996 * 109.49711 * 67.29183 * 20 7 6 40 40 H 1.09004 * 109.51506 * 307.22240 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4689 1.4425 -0.0006 5 6 4.0502 2.7480 -0.0001 6 6 5.5754 2.6272 -0.0001 7 7 6.0122 1.9410 -1.2234 8 6 7.4781 1.8877 -1.3022 9 6 7.8909 1.0122 -2.4902 10 7 7.2212 1.5177 -3.6981 11 6 7.9332 1.7857 -4.8366 12 1 7.5834 2.5380 -5.5280 13 6 9.1049 1.0902 -5.1023 14 7 9.3772 -0.0163 -4.4435 15 14 10.2950 1.7246 -6.3947 16 1 9.7614 2.9775 -6.9867 17 1 11.6115 1.9973 -5.7640 18 1 10.4588 0.7035 -7.4605 19 6 5.7663 1.7283 -3.6506 20 6 5.4372 2.5756 -2.4169 21 1 -0.3634 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6766 1.9564 0.8900 27 1 1.6766 1.9563 -0.8900 28 1 3.7289 3.2885 0.8903 29 1 3.7282 3.2894 -0.8896 30 1 5.8946 2.0552 0.8711 31 1 6.0188 3.6224 0.0363 32 1 7.8766 1.4623 -0.3811 33 1 7.8720 2.8948 -1.4385 34 1 8.9716 1.0612 -2.6231 35 1 7.5911 -0.0196 -2.3064 36 1 10.1957 -0.5025 -4.6294 37 1 5.4424 2.2509 -4.5507 38 1 5.2591 0.7661 -3.5799 39 1 5.8594 3.5732 -2.5376 40 1 4.3554 2.6496 -2.3046 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233234212.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:32 Heat of formation + Delta-G solvation = -41.694341 kcal Electronic energy + Delta-G solvation = -18178.784555 eV Core-core repulsion = 15414.443816 eV Total energy + Delta-G solvation = -2764.340739 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.02051 -38.66901 -36.26841 -34.50598 -33.28606 -31.78974 -30.36364 -27.80303 -26.54393 -25.08916 -24.16307 -22.62991 -22.09377 -20.76834 -18.77029 -17.54656 -17.43855 -16.87778 -16.21978 -16.02885 -15.52348 -15.33997 -15.23634 -14.95611 -14.65439 -14.49378 -13.53143 -13.44619 -13.15651 -13.03597 -12.83214 -12.64749 -12.50946 -12.41180 -12.23491 -12.00830 -11.84829 -11.74111 -11.70903 -11.44821 -11.30132 -10.60946 -10.39753 -9.17152 -8.66285 -7.87497 -5.34925 1.46273 1.47037 1.58579 2.50367 2.78523 3.06131 3.28168 3.67702 3.98712 4.08360 4.18535 4.24303 4.31001 4.36768 4.43950 4.48499 4.54363 4.60611 4.64583 4.69830 4.71826 4.77638 4.87106 4.90468 4.96715 5.06211 5.19039 5.19720 5.28170 5.35762 5.39595 5.60580 5.67703 6.22479 6.26723 6.38118 6.49039 7.12830 7.82611 8.38820 9.19515 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.038557 B = 0.004838 C = 0.004624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.030868 B = 5785.848999 C = 6053.463581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.124 4.124 3 C 0.057 3.943 4 O -0.399 6.399 5 C 0.065 3.935 6 C 0.055 3.945 7 N -0.539 5.539 8 C 0.051 3.949 9 C 0.187 3.813 10 N -0.614 5.614 11 C -0.267 4.267 12 H 0.068 0.932 13 C -0.051 4.051 14 N -0.937 5.937 15 Si 0.972 3.028 16 H -0.266 1.266 17 H -0.288 1.288 18 H -0.291 1.291 19 C 0.145 3.855 20 C 0.056 3.944 21 H 0.066 0.934 22 H 0.059 0.941 23 H 0.065 0.935 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.022 0.978 34 H 0.057 0.943 35 H -0.006 1.006 36 H 0.251 0.749 37 H 0.059 0.941 38 H 0.009 0.991 39 H 0.024 0.976 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.331 6.234 10.903 19.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.162 4.162 3 C -0.020 4.020 4 O -0.318 6.318 5 C -0.011 4.011 6 C -0.073 4.073 7 N -0.264 5.264 8 C -0.078 4.078 9 C 0.061 3.939 10 N -0.338 5.338 11 C -0.397 4.397 12 H 0.086 0.914 13 C -0.247 4.247 14 N -0.583 5.583 15 Si 0.800 3.200 16 H -0.190 1.190 17 H -0.215 1.215 18 H -0.218 1.218 19 C 0.020 3.980 20 C -0.073 4.073 21 H 0.085 0.915 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.012 0.988 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.027 0.973 39 H 0.042 0.958 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.279 5.502 10.891 18.782 hybrid contribution 1.098 0.819 -0.825 1.600 sum -13.181 6.321 10.066 17.748 Atomic orbital electron populations 1.21662 0.93124 1.02735 1.02536 1.21459 0.96964 0.95456 1.02340 1.22660 0.80644 0.98125 1.00542 1.88020 1.20163 1.28210 1.95426 1.22648 0.92475 0.84944 1.01058 1.22234 0.94396 0.97554 0.93094 1.61861 1.08448 1.53834 1.02278 1.22572 0.87622 0.98357 0.99263 1.20577 0.96567 0.92730 0.83989 1.44399 1.02446 1.77149 1.09833 1.19591 1.05286 1.14497 1.00287 0.91449 1.25885 1.02204 0.95503 1.01072 1.70204 1.25900 1.16415 1.45793 0.85138 0.78634 0.77861 0.78372 1.19016 1.21482 1.21793 1.21103 0.84492 0.96401 0.96053 1.22480 0.99425 0.94906 0.90488 0.91542 0.92227 0.91597 0.92860 0.91773 0.92127 0.93312 0.90713 0.92792 0.90089 0.92676 0.90316 0.95968 0.92508 0.98819 0.94032 0.92215 0.97286 0.95822 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.91 71.98 0.71 -1.37 16 2 C -0.12 -2.54 6.30 30.60 0.19 -2.35 16 3 C 0.06 1.19 5.94 71.99 0.43 1.62 16 4 O -0.40 -11.25 10.24 -148.98 -1.53 -12.77 16 5 C 0.07 1.54 5.55 71.98 0.40 1.94 16 6 C 0.05 1.52 5.52 86.30 0.48 2.00 16 7 N -0.54 -19.94 4.64 -895.25 -4.15 -24.10 16 8 C 0.05 2.09 5.62 86.38 0.49 2.58 16 9 C 0.19 9.77 5.40 86.35 0.47 10.23 16 10 N -0.61 -33.08 3.03 -698.14 -2.12 -35.20 16 11 C -0.27 -15.30 9.62 84.03 0.81 -14.50 16 12 H 0.07 3.75 7.88 -2.91 -0.02 3.72 16 13 C -0.05 -2.96 4.96 84.86 0.42 -2.54 16 14 N -0.94 -57.36 11.16 21.65 0.24 -57.12 16 15 Si 0.97 45.82 29.58 68.60 2.03 47.85 16 16 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 17 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 18 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 19 C 0.15 6.58 6.69 86.35 0.58 7.15 16 20 C 0.06 2.06 5.22 86.38 0.45 2.51 16 21 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 22 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.05 1.23 6.04 -2.39 -0.01 1.22 16 30 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.08 2.89 8.11 -2.39 -0.02 2.87 16 33 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.06 3.26 6.18 -2.39 -0.01 3.24 16 35 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 36 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 37 H 0.06 2.56 7.95 -2.39 -0.02 2.54 16 38 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.09 2.84 5.72 -2.38 -0.01 2.82 16 Total: -1.00 -67.76 314.89 0.87 -66.89 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 0.97 Total: 7.16 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: 5.42 Total: 7.28 kcal Atomic # 7 Polarization: -110.39 SS G_CDS: -6.03 Total: -116.41 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -1.53 Total: -12.77 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -67.76 0.87 -66.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233234212.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.197 kcal (2) G-P(sol) polarization free energy of solvation -67.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds