Wall clock time and date at job start Mon Mar 30 2020 05:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47061 * 2 1 4 4 C 1.50702 * 109.46664 * 119.99838 * 2 1 3 5 5 H 1.07998 * 119.99833 * 114.29545 * 4 2 1 6 6 C 1.37872 * 120.00242 * 294.28907 * 4 2 1 7 7 N 1.31516 * 120.00105 * 158.75795 * 6 4 2 8 8 Si 1.86806 * 120.00014 * 338.75872 * 6 4 2 9 9 H 1.48501 * 109.46854 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.47032 * 299.99970 * 8 6 4 11 11 H 1.48497 * 109.46921 * 60.00121 * 8 6 4 12 12 N 1.46898 * 109.47213 * 239.99677 * 2 1 3 13 13 C 1.46898 * 111.00384 * 306.04693 * 12 2 1 14 14 C 1.52994 * 109.47456 * 195.26428 * 13 12 2 15 15 O 1.42898 * 109.47027 * 63.64159 * 14 13 12 16 16 C 1.46897 * 110.99944 * 70.00440 * 12 2 1 17 17 C 1.53006 * 109.47452 * 76.22537 * 16 12 2 18 18 H 1.09004 * 110.36240 * 296.24718 * 17 16 12 19 19 C 1.54374 * 110.41284 * 173.89373 * 17 16 12 20 20 C 1.54262 * 105.06082 * 217.37080 * 19 17 16 21 21 C 1.54383 * 105.05953 * 359.97438 * 20 19 17 22 22 N 1.48556 * 110.40750 * 58.71943 * 17 16 12 23 23 H 1.08995 * 109.47077 * 294.76375 * 1 2 3 24 24 H 1.09000 * 109.46548 * 54.76324 * 1 2 3 25 25 H 1.08997 * 109.46707 * 174.75983 * 1 2 3 26 26 H 0.97000 * 119.99995 * 354.95037 * 7 6 4 27 27 H 1.09007 * 109.47000 * 315.27114 * 13 12 2 28 28 H 1.09007 * 109.46759 * 75.26285 * 13 12 2 29 29 H 1.08994 * 109.47374 * 183.64154 * 14 13 12 30 30 H 1.09003 * 109.46979 * 303.64267 * 14 13 12 31 31 H 0.96706 * 114.00637 * 180.02562 * 15 14 13 32 32 H 1.08999 * 109.47374 * 196.22939 * 16 12 2 33 33 H 1.09002 * 109.47201 * 316.22665 * 16 12 2 34 34 H 1.08999 * 110.32802 * 336.26763 * 19 17 16 35 35 H 1.09001 * 110.32591 * 98.47210 * 19 17 16 36 36 H 1.08998 * 110.32557 * 118.89939 * 20 19 17 37 37 H 1.08998 * 110.32178 * 241.00407 * 20 19 17 38 38 H 1.09000 * 110.41004 * 142.63142 * 21 20 19 39 39 H 1.08996 * 110.41090 * 265.07295 * 21 20 19 40 40 H 1.00900 * 111.00407 * 277.81734 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5750 -1.6391 1.1341 6 6 1.7990 -0.1747 2.4793 7 7 1.8453 -0.9449 3.5444 8 14 1.4170 1.6451 2.6586 9 1 1.2069 1.9678 4.0928 10 1 2.5531 2.4435 2.1323 11 1 0.1868 1.9703 1.8931 12 7 2.0197 -0.6925 -1.1994 13 6 1.4344 -2.0355 -1.3078 14 6 2.2304 -2.8584 -2.3226 15 8 3.5667 -3.0360 -1.8485 16 6 1.7531 0.0971 -2.4090 17 6 2.7552 1.2500 -2.4967 18 1 2.6221 1.9330 -1.6576 19 6 2.5939 2.0030 -3.8347 20 6 4.0285 2.3820 -4.2568 21 6 4.9357 1.8267 -3.1379 22 7 4.1453 0.7269 -2.5266 23 1 -0.3633 0.4304 0.9331 24 1 -0.3632 0.5929 -0.8394 25 1 -0.3632 -1.0234 -0.0939 26 1 1.9708 -1.9017 3.4459 27 1 1.4686 -2.5263 -0.3350 28 1 0.3986 -1.9548 -1.6378 29 1 1.7581 -3.8323 -2.4511 30 1 2.2505 -2.3354 -3.2787 31 1 4.1302 -3.5497 -2.4433 32 1 1.8537 -0.5394 -3.2880 33 1 0.7406 0.4984 -2.3651 34 1 2.1385 1.3535 -4.5822 35 1 1.9912 2.9002 -3.6940 36 1 4.2771 1.9185 -5.2114 37 1 4.1293 3.4651 -4.3249 38 1 5.8637 1.4391 -3.5583 39 1 5.1458 2.6005 -2.3997 40 1 4.4740 0.5201 -1.5954 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235069932.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:44 Heat of formation + Delta-G solvation = -39.761292 kcal Electronic energy + Delta-G solvation = -18985.822796 eV Core-core repulsion = 16221.565881 eV Total energy + Delta-G solvation = -2764.256916 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.74197 -37.15804 -35.61489 -32.68569 -30.26384 -29.90746 -29.85486 -26.93264 -25.01679 -23.77028 -21.52890 -20.85053 -20.05531 -18.55708 -17.30547 -16.83451 -16.34893 -15.31695 -15.00953 -14.54992 -14.09810 -13.72512 -13.07813 -12.96443 -12.71921 -12.47297 -12.33795 -11.86237 -11.74420 -11.50329 -11.34175 -11.24968 -11.11345 -10.85850 -10.52451 -10.41966 -10.29719 -10.14312 -9.75144 -9.64291 -9.37178 -8.88109 -8.13911 -8.02321 -7.13647 -6.36596 -3.92486 3.40598 3.45599 3.62628 4.54953 4.56824 4.72598 4.89989 5.00207 5.07094 5.25217 5.30933 5.45391 5.66686 5.70207 5.78047 5.83661 5.88034 5.95334 6.01167 6.05940 6.13120 6.17613 6.25806 6.29057 6.33608 6.45314 6.50899 6.71701 6.75167 7.01316 7.24261 7.28788 7.87053 7.89118 8.15219 8.26503 8.45555 8.56449 9.12469 9.71901 11.01607 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.018767 B = 0.009310 C = 0.007433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.585747 B = 3006.798761 C = 3766.031080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.186 3.814 3 H 0.027 0.973 4 C -0.582 4.582 5 H 0.068 0.932 6 C 0.033 3.967 7 N -0.906 5.906 8 Si 1.035 2.965 9 H -0.287 1.287 10 H -0.286 1.286 11 H -0.280 1.280 12 N -0.502 5.502 13 C 0.062 3.938 14 C 0.086 3.914 15 O -0.544 6.544 16 C 0.061 3.939 17 C 0.076 3.924 18 H 0.046 0.954 19 C -0.121 4.121 20 C -0.121 4.121 21 C 0.030 3.970 22 N -0.642 5.642 23 H 0.055 0.945 24 H 0.020 0.980 25 H 0.046 0.954 26 H 0.268 0.732 27 H 0.092 0.908 28 H 0.031 0.969 29 H 0.030 0.970 30 H 0.036 0.964 31 H 0.360 0.640 32 H 0.065 0.935 33 H 0.028 0.972 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.032 0.968 40 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.912 3.147 -15.225 15.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.078 3.922 3 H 0.044 0.956 4 C -0.620 4.620 5 H 0.086 0.914 6 C -0.172 4.172 7 N -0.540 5.540 8 Si 0.864 3.136 9 H -0.212 1.212 10 H -0.212 1.212 11 H -0.207 1.207 12 N -0.224 5.224 13 C -0.066 4.066 14 C 0.008 3.992 15 O -0.346 6.346 16 C -0.068 4.068 17 C -0.035 4.035 18 H 0.064 0.936 19 C -0.160 4.160 20 C -0.160 4.160 21 C -0.099 4.099 22 N -0.273 5.273 23 H 0.074 0.926 24 H 0.039 0.961 25 H 0.065 0.935 26 H 0.078 0.922 27 H 0.110 0.890 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.054 0.946 31 H 0.204 0.796 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.849 4.181 -14.115 14.745 hybrid contribution -0.476 -0.662 -0.978 1.273 sum 0.374 3.519 -15.092 15.501 Atomic orbital electron populations 1.22849 1.01775 1.00027 0.99661 1.19650 0.88761 0.94500 0.89243 0.95559 1.21949 1.39158 1.10873 0.90016 0.91366 1.25574 0.94145 1.05295 0.92209 1.70829 1.45086 1.06615 1.31468 0.84190 0.76845 0.76683 0.75904 1.21241 1.21217 1.20650 1.62083 1.58173 1.00967 1.01206 1.21993 0.93201 0.91019 1.00375 1.22214 0.83813 0.96592 0.96598 1.86763 1.22075 1.76920 1.48882 1.22135 0.95007 0.94862 0.94756 1.22389 0.90777 0.94791 0.95522 0.93637 1.22332 0.96704 0.99539 0.97399 1.22249 0.95089 0.99770 0.98843 1.22907 0.97369 0.93420 0.96251 1.63545 1.01071 1.35147 1.27525 0.92606 0.96077 0.93519 0.92181 0.89002 0.95100 0.95179 0.94575 0.79628 0.91650 0.95421 0.91426 0.91961 0.91575 0.92075 0.90836 0.94927 0.83016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.07 8.28 37.16 0.31 -3.76 16 2 C 0.19 4.41 1.81 -68.86 -0.12 4.29 16 3 H 0.03 0.65 5.34 -51.93 -0.28 0.37 16 4 C -0.58 -16.33 8.10 -34.44 -0.28 -16.61 16 5 H 0.07 2.13 7.27 -52.49 -0.38 1.75 16 6 C 0.03 0.95 5.24 -17.82 -0.09 0.86 16 7 N -0.91 -27.95 13.70 55.43 0.76 -27.19 16 8 Si 1.03 25.41 26.40 -169.99 -4.49 20.92 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.40 5.98 56.52 0.34 -6.06 16 12 N -0.50 -10.43 4.10 -228.03 -0.94 -11.37 16 13 C 0.06 1.23 4.07 -3.83 -0.02 1.21 16 14 C 0.09 1.42 7.18 37.15 0.27 1.69 16 15 O -0.54 -9.80 13.59 -35.23 -0.48 -10.28 16 16 C 0.06 1.08 4.36 -3.82 -0.02 1.06 16 17 C 0.08 1.26 3.16 -66.07 -0.21 1.05 16 18 H 0.05 0.84 6.99 -51.93 -0.36 0.48 16 19 C -0.12 -1.60 6.55 -25.35 -0.17 -1.76 16 20 C -0.12 -1.45 7.00 -25.35 -0.18 -1.63 16 21 C 0.03 0.41 7.47 -2.16 -0.02 0.40 16 22 N -0.64 -10.70 7.13 -102.73 -0.73 -11.44 16 23 H 0.06 1.30 5.26 -51.93 -0.27 1.03 16 24 H 0.02 0.41 6.64 -51.93 -0.34 0.06 16 25 H 0.05 1.01 6.37 -51.93 -0.33 0.68 16 26 H 0.27 8.29 8.73 -40.82 -0.36 7.93 16 27 H 0.09 2.12 6.48 -51.93 -0.34 1.78 16 28 H 0.03 0.57 6.99 -51.92 -0.36 0.20 16 29 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.04 0.56 6.41 -51.93 -0.33 0.23 16 31 H 0.36 4.57 9.12 45.56 0.42 4.99 16 32 H 0.07 1.09 6.08 -51.93 -0.32 0.78 16 33 H 0.03 0.49 6.25 -51.93 -0.32 0.16 16 34 H 0.07 0.85 7.80 -51.93 -0.41 0.45 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.35 6.63 8.92 -39.29 -0.35 6.28 16 LS Contribution 301.83 15.07 4.55 4.55 Total: -1.00 -31.01 301.83 -7.59 -38.59 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -5.74 Total: 9.41 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -0.52 Total: -13.20 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: -0.91 Total: -49.99 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -0.48 Total: -10.28 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -4.49 Total: 20.92 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.01 -7.59 -38.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235069932.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.169 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds