Wall clock time and date at job start Mon Mar 30 2020 05:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47061 * 2 1 4 4 C 1.50702 * 109.46664 * 119.99838 * 2 1 3 5 5 H 1.07998 * 119.99833 * 114.29545 * 4 2 1 6 6 C 1.37872 * 120.00242 * 294.28907 * 4 2 1 7 7 N 1.31516 * 120.00105 * 158.75795 * 6 4 2 8 8 Si 1.86806 * 120.00014 * 338.75872 * 6 4 2 9 9 H 1.48501 * 109.46854 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.47032 * 299.99970 * 8 6 4 11 11 H 1.48497 * 109.46921 * 60.00121 * 8 6 4 12 12 N 1.46898 * 109.47213 * 239.99677 * 2 1 3 13 13 C 1.46898 * 111.00384 * 306.04693 * 12 2 1 14 14 C 1.52994 * 109.47456 * 195.26428 * 13 12 2 15 15 O 1.42898 * 109.47027 * 63.64159 * 14 13 12 16 16 C 1.46897 * 110.99944 * 70.00440 * 12 2 1 17 17 C 1.53006 * 109.47452 * 76.22537 * 16 12 2 18 18 H 1.09004 * 110.36240 * 296.24718 * 17 16 12 19 19 C 1.54374 * 110.41284 * 173.89373 * 17 16 12 20 20 C 1.54262 * 105.06082 * 217.37080 * 19 17 16 21 21 C 1.54383 * 105.05953 * 359.97438 * 20 19 17 22 22 N 1.48556 * 110.40750 * 58.71943 * 17 16 12 23 23 H 1.08995 * 109.47077 * 294.76375 * 1 2 3 24 24 H 1.09000 * 109.46548 * 54.76324 * 1 2 3 25 25 H 1.08997 * 109.46707 * 174.75983 * 1 2 3 26 26 H 0.97000 * 119.99995 * 354.95037 * 7 6 4 27 27 H 1.09007 * 109.47000 * 315.27114 * 13 12 2 28 28 H 1.09007 * 109.46759 * 75.26285 * 13 12 2 29 29 H 1.08994 * 109.47374 * 183.64154 * 14 13 12 30 30 H 1.09003 * 109.46979 * 303.64267 * 14 13 12 31 31 H 0.96706 * 114.00637 * 180.02562 * 15 14 13 32 32 H 1.08999 * 109.47374 * 196.22939 * 16 12 2 33 33 H 1.09002 * 109.47201 * 316.22665 * 16 12 2 34 34 H 1.08999 * 110.32802 * 336.26763 * 19 17 16 35 35 H 1.09001 * 110.32591 * 98.47210 * 19 17 16 36 36 H 1.08998 * 110.32557 * 118.89939 * 20 19 17 37 37 H 1.08998 * 110.32178 * 241.00407 * 20 19 17 38 38 H 1.09000 * 110.41004 * 142.63142 * 21 20 19 39 39 H 1.08996 * 110.41090 * 265.07295 * 21 20 19 40 40 H 1.00900 * 111.00407 * 277.81734 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5750 -1.6391 1.1341 6 6 1.7990 -0.1747 2.4793 7 7 1.8453 -0.9449 3.5444 8 14 1.4170 1.6451 2.6586 9 1 1.2069 1.9678 4.0928 10 1 2.5531 2.4435 2.1323 11 1 0.1868 1.9703 1.8931 12 7 2.0197 -0.6925 -1.1994 13 6 1.4344 -2.0355 -1.3078 14 6 2.2304 -2.8584 -2.3226 15 8 3.5667 -3.0360 -1.8485 16 6 1.7531 0.0971 -2.4090 17 6 2.7552 1.2500 -2.4967 18 1 2.6221 1.9330 -1.6576 19 6 2.5939 2.0030 -3.8347 20 6 4.0285 2.3820 -4.2568 21 6 4.9357 1.8267 -3.1379 22 7 4.1453 0.7269 -2.5266 23 1 -0.3633 0.4304 0.9331 24 1 -0.3632 0.5929 -0.8394 25 1 -0.3632 -1.0234 -0.0939 26 1 1.9708 -1.9017 3.4459 27 1 1.4686 -2.5263 -0.3350 28 1 0.3986 -1.9548 -1.6378 29 1 1.7581 -3.8323 -2.4511 30 1 2.2505 -2.3354 -3.2787 31 1 4.1302 -3.5497 -2.4433 32 1 1.8537 -0.5394 -3.2880 33 1 0.7406 0.4984 -2.3651 34 1 2.1385 1.3535 -4.5822 35 1 1.9912 2.9002 -3.6940 36 1 4.2771 1.9185 -5.2114 37 1 4.1293 3.4651 -4.3249 38 1 5.8637 1.4391 -3.5583 39 1 5.1458 2.6005 -2.3997 40 1 4.4740 0.5201 -1.5954 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235069932.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:43 Heat of formation + Delta-G solvation = -66.514399 kcal Electronic energy + Delta-G solvation = -18986.982898 eV Core-core repulsion = 16221.565881 eV Total energy + Delta-G solvation = -2765.417017 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.13273 -38.51557 -37.09876 -34.76887 -31.93419 -31.34735 -30.96960 -28.37628 -26.95863 -25.25462 -23.17827 -22.09100 -21.22691 -20.29269 -19.27735 -18.22354 -17.59531 -16.93048 -16.30206 -16.07324 -15.56549 -15.32748 -14.69478 -14.62270 -14.24040 -13.82703 -13.73740 -13.59695 -13.27402 -13.01390 -12.79060 -12.65100 -12.48628 -12.29779 -12.08560 -11.89558 -11.74190 -11.63289 -11.44173 -11.22521 -11.03894 -10.68631 -10.31124 -9.33931 -8.77866 -8.64398 -6.23548 1.42717 1.49908 1.68832 2.50344 3.07321 3.19989 3.47634 3.61001 3.88175 3.96145 4.16985 4.25546 4.35796 4.39329 4.48290 4.57396 4.60791 4.65229 4.67631 4.72095 4.77203 4.83631 4.92008 5.01717 5.03904 5.08196 5.10210 5.23691 5.28216 5.34006 5.49358 5.92401 6.07706 6.13349 6.39939 6.48044 6.71037 6.86044 7.15233 7.50378 8.68706 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.018767 B = 0.009310 C = 0.007433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.585747 B = 3006.798761 C = 3766.031080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.191 3.809 3 H 0.025 0.975 4 C -0.576 4.576 5 H 0.020 0.980 6 C -0.019 4.019 7 N -0.940 5.940 8 Si 1.077 2.923 9 H -0.291 1.291 10 H -0.271 1.271 11 H -0.248 1.248 12 N -0.515 5.515 13 C 0.061 3.939 14 C 0.093 3.907 15 O -0.577 6.577 16 C 0.065 3.935 17 C 0.071 3.929 18 H 0.023 0.977 19 C -0.115 4.115 20 C -0.115 4.115 21 C 0.027 3.973 22 N -0.653 5.653 23 H 0.042 0.958 24 H 0.053 0.947 25 H 0.042 0.958 26 H 0.251 0.749 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.382 0.618 32 H 0.079 0.921 33 H 0.035 0.965 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.030 0.970 40 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.266 4.970 -18.166 18.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.082 3.918 3 H 0.043 0.957 4 C -0.614 4.614 5 H 0.039 0.961 6 C -0.217 4.217 7 N -0.576 5.576 8 Si 0.900 3.100 9 H -0.217 1.217 10 H -0.197 1.197 11 H -0.172 1.172 12 N -0.238 5.238 13 C -0.067 4.067 14 C 0.015 3.985 15 O -0.382 6.382 16 C -0.063 4.063 17 C -0.040 4.040 18 H 0.041 0.959 19 C -0.154 4.154 20 C -0.153 4.153 21 C -0.103 4.103 22 N -0.281 5.281 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.230 0.770 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.048 0.952 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.210 5.987 -17.117 18.135 hybrid contribution -0.192 -1.346 -0.118 1.365 sum 0.018 4.641 -17.235 17.848 Atomic orbital electron populations 1.22692 1.00191 1.00401 1.00328 1.19418 0.89719 0.93816 0.88813 0.95712 1.22052 1.37859 1.09121 0.92411 0.96139 1.26970 0.93790 1.08954 0.92023 1.70960 1.48283 1.05785 1.32584 0.83646 0.78538 0.71685 0.76161 1.21676 1.19661 1.17247 1.61975 1.58640 1.01565 1.01578 1.21981 0.94933 0.90737 0.99058 1.22170 0.83031 0.97504 0.95774 1.86703 1.23185 1.77732 1.50617 1.22206 0.95731 0.95036 0.93365 1.22443 0.90508 0.94212 0.96829 0.95881 1.22321 0.97843 0.99803 0.95414 1.22253 0.93617 1.00992 0.98431 1.23025 0.97908 0.92636 0.96699 1.63575 1.01666 1.36683 1.26186 0.93861 0.92841 0.93859 0.94052 0.93711 0.93527 0.92613 0.92693 0.77034 0.90237 0.94725 0.90380 0.90610 0.90327 0.90222 0.89903 0.95185 0.85140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.56 8.28 71.98 0.60 -6.96 16 2 C 0.19 9.00 1.81 44.17 0.08 9.08 16 3 H 0.03 1.20 5.34 -2.39 -0.01 1.19 16 4 C -0.58 -33.52 8.10 25.60 0.21 -33.31 16 5 H 0.02 1.36 7.27 -2.91 -0.02 1.34 16 6 C -0.02 -1.15 5.24 84.65 0.44 -0.71 16 7 N -0.94 -60.40 13.70 21.45 0.29 -60.11 16 8 Si 1.08 51.19 26.40 68.60 1.81 53.00 16 9 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.25 -10.46 5.98 99.48 0.59 -9.87 16 12 N -0.51 -21.12 4.10 -875.37 -3.59 -24.72 16 13 C 0.06 2.39 4.07 86.30 0.35 2.74 16 14 C 0.09 2.93 7.18 71.98 0.52 3.44 16 15 O -0.58 -20.50 13.59 -148.98 -2.02 -22.52 16 16 C 0.06 2.13 4.36 86.31 0.38 2.50 16 17 C 0.07 2.19 3.16 45.06 0.14 2.33 16 18 H 0.02 0.82 6.99 -2.39 -0.02 0.80 16 19 C -0.12 -2.61 6.55 31.49 0.21 -2.41 16 20 C -0.11 -2.32 7.00 31.49 0.22 -2.10 16 21 C 0.03 0.67 7.47 86.45 0.65 1.31 16 22 N -0.65 -20.86 7.13 -478.93 -3.41 -24.27 16 23 H 0.04 1.93 5.26 -2.39 -0.01 1.92 16 24 H 0.05 1.92 6.64 -2.39 -0.02 1.91 16 25 H 0.04 1.84 6.37 -2.39 -0.02 1.82 16 26 H 0.25 16.48 8.73 -92.71 -0.81 15.67 16 27 H 0.04 2.16 6.48 -2.38 -0.02 2.14 16 28 H 0.05 1.64 6.99 -2.38 -0.02 1.63 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.06 1.53 6.41 -2.39 -0.02 1.51 16 31 H 0.38 9.26 9.12 -74.05 -0.68 8.59 16 32 H 0.08 2.39 6.08 -2.39 -0.01 2.37 16 33 H 0.03 1.09 6.25 -2.39 -0.01 1.08 16 34 H 0.08 1.62 7.80 -2.39 -0.02 1.60 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.08 1.89 8.14 -2.39 -0.02 1.88 16 39 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.33 12.59 8.92 -89.69 -0.80 11.79 16 Total: -1.00 -69.90 301.83 -3.72 -73.62 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: -0.58 Total: 29.07 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: 3.79 Total: -24.07 kcal Atomic # 7 Polarization: -102.38 SS G_CDS: -6.71 Total: -109.10 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -2.02 Total: -22.52 kcal Atomic # 14 Polarization: 51.19 SS G_CDS: 1.81 Total: 53.00 kcal Total: -69.90 -3.72 -73.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235069932.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.104 kcal (2) G-P(sol) polarization free energy of solvation -69.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds