Wall clock time and date at job start Mon Mar 30 2020 05:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.46740 * 2 1 4 4 C 1.50699 * 109.47086 * 240.00099 * 2 1 3 5 5 H 1.07997 * 120.00215 * 239.14863 * 4 2 1 6 6 C 1.37875 * 120.00143 * 59.13991 * 4 2 1 7 7 N 1.31520 * 119.99963 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00191 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47132 * 90.00178 * 8 6 4 10 10 H 1.48508 * 109.47264 * 210.00270 * 8 6 4 11 11 H 1.48504 * 109.47150 * 330.00278 * 8 6 4 12 12 N 1.46895 * 109.47119 * 120.00186 * 2 1 3 13 13 C 1.46903 * 111.00301 * 43.68419 * 12 2 1 14 14 C 1.52999 * 109.47089 * 75.34401 * 13 12 2 15 15 O 1.42904 * 109.47198 * 60.57014 * 14 13 12 16 16 C 1.46901 * 111.00204 * 279.73029 * 12 2 1 17 17 C 1.52999 * 109.47207 * 199.75094 * 16 12 2 18 18 H 1.08997 * 109.88235 * 294.67099 * 17 16 12 19 19 C 1.54321 * 109.88396 * 173.63709 * 17 16 12 20 20 C 1.55399 * 102.90186 * 218.40726 * 19 17 16 21 21 C 1.54904 * 101.73693 * 35.48383 * 20 19 17 22 22 N 1.47444 * 109.88914 * 55.70709 * 17 16 12 23 23 H 1.09004 * 109.47050 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47077 * 299.99817 * 1 2 3 25 25 H 1.08996 * 109.47199 * 60.00319 * 1 2 3 26 26 H 0.96997 * 119.99832 * 179.97438 * 7 6 4 27 27 H 1.08998 * 109.46829 * 315.34804 * 13 12 2 28 28 H 1.09003 * 109.47319 * 195.34397 * 13 12 2 29 29 H 1.09002 * 109.47450 * 300.57512 * 14 13 12 30 30 H 1.08995 * 109.47534 * 180.57253 * 14 13 12 31 31 H 0.96704 * 113.99990 * 174.99236 * 15 14 13 32 32 H 1.09004 * 109.46735 * 319.75090 * 16 12 2 33 33 H 1.09002 * 109.47134 * 79.74768 * 16 12 2 34 34 H 1.08992 * 110.71122 * 336.69301 * 19 17 16 35 35 H 1.09010 * 110.70450 * 99.93279 * 19 17 16 36 36 H 1.09004 * 110.87193 * 277.39761 * 20 19 17 37 37 H 1.08993 * 111.06036 * 153.65315 * 20 19 17 38 38 H 1.09007 * 110.37066 * 204.19303 * 21 20 19 39 39 H 1.08994 * 110.37831 * 81.85380 * 21 20 19 40 40 H 1.00901 * 110.99898 * 356.14394 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6645 -1.5804 -1.1315 6 6 1.6847 -0.2498 -2.4826 7 7 0.9151 0.8099 -2.6032 8 14 2.3067 -1.1307 -4.0079 9 1 1.3381 -2.1860 -4.3997 10 1 2.4522 -0.1554 -5.1182 11 1 3.6245 -1.7513 -3.7183 12 7 2.0196 -0.6925 1.1994 13 6 1.2601 -1.9263 1.4419 14 6 1.7024 -3.0014 0.4472 15 8 3.0949 -3.2698 0.6237 16 6 1.9766 0.1912 2.3720 17 6 2.9146 -0.3496 3.4530 18 1 2.5493 -1.3111 3.8136 19 6 2.9996 0.6524 4.6235 20 6 4.4964 0.5792 5.0350 21 6 5.1901 0.3750 3.6651 22 7 4.2750 -0.5033 2.9055 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.6708 1.1341 -3.4842 27 1 0.1958 -1.7288 1.3140 28 1 1.4457 -2.2734 2.4584 29 1 1.5263 -2.6502 -0.5696 30 1 1.1318 -3.9137 0.6205 31 1 3.4277 -3.9958 0.0786 32 1 2.2941 1.1933 2.0836 33 1 0.9589 0.2303 2.7604 34 1 2.7409 1.6573 4.2902 35 1 2.3557 0.3400 5.4458 36 1 4.6768 -0.2698 5.6944 37 1 4.8202 1.5093 5.5019 38 1 6.1576 -0.1094 3.7982 39 1 5.3103 1.3303 3.1544 40 1 4.2958 -0.2823 1.9212 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235425262.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:47 Heat of formation + Delta-G solvation = -31.045282 kcal Electronic energy + Delta-G solvation = -19019.132787 eV Core-core repulsion = 16255.253826 eV Total energy + Delta-G solvation = -2763.878961 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.76652 -37.12589 -35.14755 -32.78604 -30.28792 -29.63779 -28.83794 -27.12605 -25.36255 -23.41479 -21.91144 -20.79674 -19.91983 -18.60347 -16.66068 -16.53416 -15.66912 -15.63266 -14.95063 -14.37962 -13.78729 -13.48329 -13.02373 -12.92637 -12.57220 -12.48857 -11.94861 -11.94043 -11.60145 -11.38477 -11.16759 -11.00100 -10.89905 -10.64035 -10.58523 -10.50039 -10.28643 -10.08065 -9.90827 -9.62285 -8.97312 -8.68672 -8.29922 -7.79784 -7.02837 -5.98738 -3.99478 3.29868 3.37866 3.42223 4.40237 4.61253 4.94537 5.04955 5.13322 5.22240 5.29960 5.32123 5.56116 5.75514 5.85698 5.87948 5.96607 6.02301 6.10369 6.12286 6.18412 6.26861 6.34487 6.40257 6.51417 6.67589 6.74848 6.84781 6.98206 7.12071 7.38793 7.55512 7.72568 7.94612 8.10345 8.22298 8.40847 8.57618 8.64198 9.08330 9.63399 11.07996 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.026843 B = 0.007190 C = 0.006965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.849991 B = 3893.488470 C = 4019.026220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.208 3.792 3 H 0.032 0.968 4 C -0.492 4.492 5 H 0.079 0.921 6 C 0.053 3.947 7 N -0.897 5.897 8 Si 0.892 3.108 9 H -0.283 1.283 10 H -0.289 1.289 11 H -0.272 1.272 12 N -0.512 5.512 13 C 0.063 3.937 14 C 0.067 3.933 15 O -0.549 6.549 16 C 0.038 3.962 17 C 0.089 3.911 18 H 0.073 0.927 19 C -0.141 4.141 20 C -0.128 4.128 21 C 0.042 3.958 22 N -0.664 5.664 23 H 0.035 0.965 24 H 0.003 0.997 25 H 0.090 0.910 26 H 0.258 0.742 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.089 0.911 30 H 0.015 0.985 31 H 0.357 0.643 32 H 0.063 0.937 33 H 0.025 0.975 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.034 0.966 40 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.341 -2.376 10.244 10.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.102 3.898 3 H 0.050 0.950 4 C -0.531 4.531 5 H 0.097 0.903 6 C -0.147 4.147 7 N -0.537 5.537 8 Si 0.720 3.280 9 H -0.210 1.210 10 H -0.215 1.215 11 H -0.197 1.197 12 N -0.235 5.235 13 C -0.065 4.065 14 C -0.011 4.011 15 O -0.351 6.351 16 C -0.092 4.092 17 C -0.022 4.022 18 H 0.091 0.909 19 C -0.180 4.180 20 C -0.166 4.166 21 C -0.088 4.088 22 N -0.297 5.297 23 H 0.054 0.946 24 H 0.022 0.978 25 H 0.108 0.892 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.107 0.893 30 H 0.033 0.967 31 H 0.200 0.800 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.052 0.948 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.856 -2.476 10.770 11.414 hybrid contribution -0.990 0.324 -1.471 1.803 sum 1.866 -2.152 9.299 9.725 Atomic orbital electron populations 1.22454 1.01062 0.99380 1.00486 1.19384 0.89608 0.94090 0.86708 0.94971 1.21393 1.29284 1.13204 0.89176 0.90284 1.24981 0.95489 0.95222 0.98999 1.69886 1.36804 1.23806 1.23221 0.86588 0.79313 0.79302 0.82763 1.20985 1.21454 1.19726 1.62158 1.54708 1.04226 1.02433 1.22029 0.95745 0.91212 0.97519 1.22618 0.81526 0.94619 1.02353 1.86658 1.24550 1.56352 1.67568 1.22586 0.97165 0.96768 0.92716 1.22182 0.90000 0.97317 0.92686 0.90885 1.22925 0.96648 0.99858 0.98539 1.22701 0.95180 1.01186 0.97495 1.22831 0.97309 0.95146 0.93478 1.61879 1.04817 1.53895 1.09139 0.94623 0.97773 0.89164 0.93174 0.93376 0.92935 0.89299 0.96712 0.79983 0.91871 0.95693 0.91644 0.91479 0.91217 0.91667 0.91191 0.94790 0.81782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 8.02 37.16 0.30 -3.82 16 2 C 0.21 5.06 2.29 -68.87 -0.16 4.90 16 3 H 0.03 0.87 7.59 -51.93 -0.39 0.48 16 4 C -0.49 -12.88 6.68 -34.44 -0.23 -13.11 16 5 H 0.08 2.08 5.43 -52.49 -0.28 1.80 16 6 C 0.05 1.43 5.30 -17.82 -0.09 1.34 16 7 N -0.90 -25.07 11.26 55.43 0.62 -24.45 16 8 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 12 N -0.51 -10.70 3.41 -228.04 -0.78 -11.48 16 13 C 0.06 1.24 4.79 -3.82 -0.02 1.22 16 14 C 0.07 1.29 6.43 37.16 0.24 1.52 16 15 O -0.55 -10.64 13.10 -35.23 -0.46 -11.10 16 16 C 0.04 0.69 3.97 -3.82 -0.02 0.67 16 17 C 0.09 1.45 3.49 -66.72 -0.23 1.22 16 18 H 0.07 1.26 6.93 -51.93 -0.36 0.91 16 19 C -0.14 -1.87 6.49 -24.77 -0.16 -2.04 16 20 C -0.13 -1.57 7.08 -24.45 -0.17 -1.75 16 21 C 0.04 0.60 7.58 -2.30 -0.02 0.58 16 22 N -0.66 -11.50 7.30 -103.82 -0.76 -12.26 16 23 H 0.03 0.80 6.03 -51.93 -0.31 0.49 16 24 H 0.00 0.07 7.65 -51.93 -0.40 -0.33 16 25 H 0.09 2.37 6.00 -51.93 -0.31 2.05 16 26 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 27 H 0.05 0.95 5.23 -51.93 -0.27 0.68 16 28 H 0.05 0.98 6.58 -51.93 -0.34 0.64 16 29 H 0.09 1.95 4.85 -51.93 -0.25 1.70 16 30 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.36 5.35 9.12 45.56 0.42 5.77 16 32 H 0.06 1.20 7.49 -51.93 -0.39 0.81 16 33 H 0.02 0.45 7.71 -51.93 -0.40 0.05 16 34 H 0.06 0.86 7.78 -51.93 -0.40 0.46 16 35 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 39 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.36 7.10 7.62 -39.29 -0.30 6.80 16 LS Contribution 301.22 15.07 4.54 4.54 Total: -1.00 -28.17 301.22 -8.09 -36.26 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -5.68 Total: 11.83 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -0.56 Total: -9.25 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -0.91 Total: -48.19 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: -0.46 Total: -11.10 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.17 -8.09 -36.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235425262.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.219 kcal (2) G-P(sol) polarization free energy of solvation -28.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds